Wall clock time and date at job start Tue Mar 31 2020 17:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 C 1.50697 * 109.47360 * 239.99879 * 2 1 3 5 5 H 1.07997 * 120.00230 * 237.87854 * 4 2 1 6 6 C 1.37883 * 120.00050 * 57.88277 * 4 2 1 7 7 N 1.31514 * 119.99646 * 194.01975 * 6 4 2 8 8 Si 1.86796 * 119.99971 * 14.01812 * 6 4 2 9 9 H 1.48498 * 109.47314 * 90.54879 * 8 6 4 10 10 H 1.48493 * 109.47133 * 210.55026 * 8 6 4 11 11 H 1.48498 * 109.47140 * 330.55044 * 8 6 4 12 12 C 1.53000 * 109.47056 * 119.99598 * 2 1 3 13 13 N 1.46502 * 109.47215 * 300.00314 * 12 2 1 14 14 C 1.34776 * 119.99783 * 179.97438 * 13 12 2 15 15 O 1.21359 * 120.00018 * 359.97438 * 14 13 12 16 16 C 1.49332 * 119.99823 * 180.02562 * 14 13 12 17 17 O 1.21392 * 120.00022 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99823 * 179.97438 * 16 14 13 19 19 C 1.39862 * 119.99726 * 185.05023 * 18 16 14 20 20 C 1.38919 * 120.00331 * 213.76232 * 19 18 16 21 21 C 1.38140 * 120.05953 * 179.73433 * 20 19 18 22 22 C 1.38586 * 120.12629 * 0.48531 * 21 20 19 23 23 C 1.39312 * 119.95164 * 359.51047 * 22 21 20 24 24 C 1.38457 * 119.89925 * 0.24549 * 23 22 21 25 25 O 1.36512 * 108.63740 * 180.25422 * 23 22 21 26 26 C 1.43981 * 105.49515 * 342.69119 * 25 23 22 27 27 O 1.36583 * 131.43710 * 179.81813 * 22 21 20 28 28 H 1.08999 * 109.47382 * 307.60438 * 1 2 3 29 29 H 1.09003 * 109.46816 * 67.59931 * 1 2 3 30 30 H 1.08999 * 109.47409 * 187.59733 * 1 2 3 31 31 H 1.08999 * 109.47348 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47349 * 299.99839 * 3 2 1 33 33 H 1.09005 * 109.47033 * 59.99762 * 3 2 1 34 34 H 0.96996 * 119.99402 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47598 * 180.02562 * 12 2 1 36 36 H 1.09003 * 109.46797 * 60.00407 * 12 2 1 37 37 H 0.97001 * 119.99669 * 359.97438 * 13 12 2 38 38 H 0.96995 * 120.00686 * 5.04384 * 18 16 14 39 39 H 1.07993 * 119.97030 * 359.97407 * 20 19 18 40 40 H 1.08004 * 119.93855 * 180.31097 * 21 20 19 41 41 H 1.08005 * 120.01019 * 180.02562 * 24 23 22 42 42 H 1.09005 * 110.57203 * 268.59922 * 26 25 23 43 43 H 1.08998 * 110.56867 * 145.72588 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6812 -1.5681 -1.1317 6 6 1.6637 -0.2654 -2.4823 7 7 1.8635 -1.0266 -3.5359 8 14 0.8803 1.4186 -2.6816 9 1 1.9394 2.4323 -2.9186 10 1 -0.0519 1.3973 -3.8373 11 1 0.1308 1.7651 -1.4474 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5737 -1.4785 3.7809 16 6 1.3785 0.2124 4.8888 17 8 0.6801 1.1991 4.7774 18 7 1.7032 -0.2487 6.1129 19 6 1.1519 0.3454 7.2528 20 6 1.8969 0.4281 8.4224 21 6 1.3555 1.0195 9.5473 22 6 0.0647 1.5227 9.5156 23 6 -0.6851 1.4414 8.3442 24 6 -0.1401 0.8531 7.2155 25 8 -1.9073 2.0066 8.5684 26 6 -2.0468 2.0661 10.0002 27 8 -0.6890 2.1391 10.4735 28 1 -0.3634 0.6271 0.8141 29 1 -0.3633 0.3916 -0.9502 30 1 -0.3634 -1.0186 0.1359 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6038 -0.7137 -4.4165 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7489 1.2493 37 1 0.9942 0.7583 2.3563 38 1 2.3192 -0.9924 6.2034 39 1 2.9017 0.0333 8.4510 40 1 1.9383 1.0873 10.4540 41 1 -0.7196 0.7894 6.3063 42 1 -2.5352 1.1666 10.3751 43 1 -2.6032 2.9561 10.2940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411630146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:08 Heat of formation + Delta-G solvation = -75.496961 kcal Electronic energy + Delta-G solvation = -28108.853803 eV Core-core repulsion = 23928.719092 eV Total energy + Delta-G solvation = -4180.134712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51166 -41.02842 -39.19399 -37.82070 -36.91576 -36.60828 -34.87977 -33.40106 -31.55726 -30.91742 -29.65784 -26.99918 -26.40077 -26.15789 -25.16534 -24.27497 -23.48632 -22.45633 -20.44344 -19.56678 -19.10172 -18.34516 -18.07893 -17.49000 -17.07356 -16.54355 -16.11338 -15.96008 -15.61329 -15.09879 -14.97735 -14.84622 -14.59013 -14.29020 -14.02634 -13.82873 -13.46271 -13.31907 -13.19518 -13.07120 -12.98968 -12.70083 -12.27367 -12.06521 -12.01546 -11.72085 -11.44543 -11.42088 -10.53518 -10.38336 -10.28716 -10.25111 -10.09425 -9.65795 -9.18579 -9.07040 -8.84587 -8.67798 -8.49648 -8.15915 -6.19177 -4.17149 0.57067 0.83332 1.43650 2.13510 2.43094 3.05476 3.06998 3.22548 3.30202 3.33658 3.36722 3.62907 4.12514 4.28430 4.32759 4.47840 4.51329 4.62558 4.66030 4.86016 5.11905 5.13865 5.23715 5.64498 5.67423 5.71366 5.77614 5.84864 5.93722 5.99937 6.13981 6.31489 6.34759 6.40466 6.50843 6.54158 6.65397 6.71733 6.78627 6.86807 7.13991 7.34863 7.36962 7.65122 7.65931 8.07541 8.39072 8.85055 9.44598 10.93560 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.002277 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.635616 B =12291.949797 C =13052.253818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.029 3.971 3 C -0.150 4.150 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.285 1.285 10 H -0.302 1.302 11 H -0.239 1.239 12 C 0.138 3.862 13 N -0.683 5.683 14 C 0.501 3.499 15 O -0.525 6.525 16 C 0.508 3.492 17 O -0.496 6.496 18 N -0.645 5.645 19 C 0.161 3.839 20 C -0.131 4.131 21 C -0.078 4.078 22 C 0.014 3.986 23 C 0.055 3.945 24 C -0.104 4.104 25 O -0.305 6.305 26 C 0.213 3.787 27 O -0.309 6.309 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.427 0.573 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.085 0.915 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 4.233 27.575 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.705 3.295 9 H -0.213 1.213 10 H -0.230 1.230 11 H -0.165 1.165 12 C 0.016 3.984 13 N -0.335 5.335 14 C 0.280 3.720 15 O -0.402 6.402 16 C 0.291 3.709 17 O -0.369 6.369 18 N -0.293 5.293 19 C 0.066 3.934 20 C -0.151 4.151 21 C -0.097 4.097 22 C -0.031 4.031 23 C 0.010 3.990 24 C -0.125 4.125 25 O -0.221 6.221 26 C 0.101 3.899 27 O -0.225 6.225 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.266 0.734 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.102 0.898 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.255 4.363 27.307 27.979 hybrid contribution -0.567 1.043 -0.235 1.210 sum -4.822 5.405 27.072 28.024 Atomic orbital electron populations 1.22394 0.97681 1.00187 1.00253 1.18738 0.92662 0.92455 0.93414 1.22378 1.01176 0.98155 0.98965 1.20658 1.31663 1.15013 0.87912 0.90450 1.24954 0.94753 0.97040 0.95829 1.69950 1.47437 1.35892 0.99276 0.87536 0.79571 0.85301 0.77111 1.21298 1.22999 1.16465 1.21783 0.99103 0.96127 0.81366 1.46218 1.50629 1.31422 1.05197 1.19638 0.82577 0.85238 0.84538 1.90773 1.37407 1.25526 1.86517 1.20719 0.81020 0.84336 0.84839 1.90805 1.35512 1.24062 1.86535 1.43132 1.46948 1.35905 1.03351 1.17173 0.91139 0.98215 0.86865 1.20680 1.00114 1.02977 0.91365 1.19798 0.91842 0.98538 0.99559 1.19810 0.95292 1.00335 0.87651 1.19449 0.86080 0.98470 0.95033 1.19915 0.94290 1.00458 0.97848 1.87406 1.33148 1.77147 1.24416 1.25644 0.83938 1.04199 0.76092 1.87371 1.18198 1.74212 1.42767 0.95656 0.92235 0.93206 0.92749 0.93681 0.95134 0.92514 0.91082 0.90944 0.75270 0.73382 0.83661 0.84046 0.83339 0.89783 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.48 37.16 0.28 -2.69 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.98 7.61 37.16 0.28 -2.69 16 4 C -0.51 -13.38 8.62 -34.44 -0.30 -13.68 16 5 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 6 C 0.08 2.10 5.33 -17.82 -0.09 2.01 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 8 Si 0.87 20.53 22.89 -169.99 -3.89 16.64 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.24 -5.10 4.36 56.52 0.25 -4.86 16 12 C 0.14 2.58 4.50 -4.04 -0.02 2.56 16 13 N -0.68 -10.95 4.99 -60.77 -0.30 -11.25 16 14 C 0.50 7.58 7.88 -11.64 -0.09 7.49 16 15 O -0.52 -8.81 16.48 5.49 0.09 -8.72 16 16 C 0.51 6.75 7.62 -11.64 -0.09 6.66 16 17 O -0.50 -7.51 14.17 5.46 0.08 -7.44 16 18 N -0.65 -6.70 5.33 -10.28 -0.05 -6.75 16 19 C 0.16 1.65 6.27 -83.71 -0.52 1.12 16 20 C -0.13 -1.02 9.96 -39.37 -0.39 -1.41 16 21 C -0.08 -0.63 10.05 -39.49 -0.40 -1.02 16 22 C 0.01 0.14 7.15 -39.05 -0.28 -0.14 16 23 C 0.05 0.63 7.15 -39.10 -0.28 0.35 16 24 C -0.10 -1.24 8.66 -39.27 -0.34 -1.58 16 25 O -0.31 -3.35 11.40 -45.73 -0.52 -3.87 16 26 C 0.21 1.51 8.89 101.05 0.90 2.41 16 27 O -0.31 -2.96 11.41 -45.96 -0.52 -3.48 16 28 H 0.02 0.43 7.08 -51.93 -0.37 0.07 16 29 H 0.06 1.27 3.85 -51.93 -0.20 1.07 16 30 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.95 2.61 -51.93 -0.14 0.81 16 33 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.41 6.30 5.70 -40.82 -0.23 6.07 16 38 H 0.43 3.56 8.30 -40.82 -0.34 3.22 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.15 1.94 6.43 -52.48 -0.34 1.60 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -31.87 348.98 -5.58 -37.44 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.06 Total: 7.58 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.42 Total: -0.07 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.42 Total: -43.35 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.88 Total: -23.51 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -3.89 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.87 -5.58 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411630146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.055 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds