Wall clock time and date at job start Tue Mar 31 2020 17:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 C 1.50697 * 109.47360 * 239.99879 * 2 1 3 5 5 H 1.07997 * 120.00230 * 237.87854 * 4 2 1 6 6 C 1.37883 * 120.00050 * 57.88277 * 4 2 1 7 7 N 1.31514 * 119.99646 * 194.01975 * 6 4 2 8 8 Si 1.86796 * 119.99971 * 14.01812 * 6 4 2 9 9 H 1.48498 * 109.47314 * 90.54879 * 8 6 4 10 10 H 1.48493 * 109.47133 * 210.55026 * 8 6 4 11 11 H 1.48498 * 109.47140 * 330.55044 * 8 6 4 12 12 C 1.53000 * 109.47056 * 119.99598 * 2 1 3 13 13 N 1.46502 * 109.47215 * 300.00314 * 12 2 1 14 14 C 1.34776 * 119.99783 * 179.97438 * 13 12 2 15 15 O 1.21359 * 120.00018 * 359.97438 * 14 13 12 16 16 C 1.49332 * 119.99823 * 180.02562 * 14 13 12 17 17 O 1.21392 * 120.00022 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99823 * 179.97438 * 16 14 13 19 19 C 1.39862 * 119.99726 * 185.05023 * 18 16 14 20 20 C 1.38919 * 120.00331 * 213.76232 * 19 18 16 21 21 C 1.38140 * 120.05953 * 179.73433 * 20 19 18 22 22 C 1.38586 * 120.12629 * 0.48531 * 21 20 19 23 23 C 1.39312 * 119.95164 * 359.51047 * 22 21 20 24 24 C 1.38457 * 119.89925 * 0.24549 * 23 22 21 25 25 O 1.36512 * 108.63740 * 180.25422 * 23 22 21 26 26 C 1.43981 * 105.49515 * 342.69119 * 25 23 22 27 27 O 1.36583 * 131.43710 * 179.81813 * 22 21 20 28 28 H 1.08999 * 109.47382 * 307.60438 * 1 2 3 29 29 H 1.09003 * 109.46816 * 67.59931 * 1 2 3 30 30 H 1.08999 * 109.47409 * 187.59733 * 1 2 3 31 31 H 1.08999 * 109.47348 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47349 * 299.99839 * 3 2 1 33 33 H 1.09005 * 109.47033 * 59.99762 * 3 2 1 34 34 H 0.96996 * 119.99402 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47598 * 180.02562 * 12 2 1 36 36 H 1.09003 * 109.46797 * 60.00407 * 12 2 1 37 37 H 0.97001 * 119.99669 * 359.97438 * 13 12 2 38 38 H 0.96995 * 120.00686 * 5.04384 * 18 16 14 39 39 H 1.07993 * 119.97030 * 359.97407 * 20 19 18 40 40 H 1.08004 * 119.93855 * 180.31097 * 21 20 19 41 41 H 1.08005 * 120.01019 * 180.02562 * 24 23 22 42 42 H 1.09005 * 110.57203 * 268.59922 * 26 25 23 43 43 H 1.08998 * 110.56867 * 145.72588 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6812 -1.5681 -1.1317 6 6 1.6637 -0.2654 -2.4823 7 7 1.8635 -1.0266 -3.5359 8 14 0.8803 1.4186 -2.6816 9 1 1.9394 2.4323 -2.9186 10 1 -0.0519 1.3973 -3.8373 11 1 0.1308 1.7651 -1.4474 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5737 -1.4785 3.7809 16 6 1.3785 0.2124 4.8888 17 8 0.6801 1.1991 4.7774 18 7 1.7032 -0.2487 6.1129 19 6 1.1519 0.3454 7.2528 20 6 1.8969 0.4281 8.4224 21 6 1.3555 1.0195 9.5473 22 6 0.0647 1.5227 9.5156 23 6 -0.6851 1.4414 8.3442 24 6 -0.1401 0.8531 7.2155 25 8 -1.9073 2.0066 8.5684 26 6 -2.0468 2.0661 10.0002 27 8 -0.6890 2.1391 10.4735 28 1 -0.3634 0.6271 0.8141 29 1 -0.3633 0.3916 -0.9502 30 1 -0.3634 -1.0186 0.1359 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6038 -0.7137 -4.4165 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7489 1.2493 37 1 0.9942 0.7583 2.3563 38 1 2.3192 -0.9924 6.2034 39 1 2.9017 0.0333 8.4510 40 1 1.9383 1.0873 10.4540 41 1 -0.7196 0.7894 6.3063 42 1 -2.5352 1.1666 10.3751 43 1 -2.6032 2.9561 10.2940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411630146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:07 Heat of formation + Delta-G solvation = -100.147239 kcal Electronic energy + Delta-G solvation = -28109.922719 eV Core-core repulsion = 23928.719092 eV Total energy + Delta-G solvation = -4181.203628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.19660 -42.08232 -40.34578 -38.73553 -38.46548 -37.30726 -35.84647 -34.92141 -33.44406 -31.63218 -30.43372 -28.32443 -28.00141 -27.11047 -26.79118 -25.43754 -24.23515 -23.36781 -21.55302 -21.06870 -20.20258 -19.24169 -18.85663 -18.35811 -18.08919 -17.88835 -17.45483 -17.06598 -16.95467 -16.44032 -16.18161 -15.77339 -15.53302 -15.24770 -15.03054 -14.90167 -14.79788 -14.51777 -14.40298 -14.07236 -14.02398 -14.00735 -13.81345 -13.75831 -13.00148 -12.98879 -12.54439 -12.39876 -12.23240 -12.17748 -12.00464 -11.76283 -11.11817 -11.04331 -10.79507 -10.61877 -10.34405 -10.21950 -9.83504 -8.89078 -8.29891 -6.30829 -0.26529 0.11678 0.41872 1.12852 1.36762 1.39972 1.49267 1.73342 1.99536 2.35264 2.41688 2.51536 2.64317 3.06668 3.30868 3.42251 3.79231 3.95350 4.01267 4.03017 4.06128 4.27043 4.30742 4.39405 4.46449 4.48593 4.73237 4.80777 4.82868 4.91521 4.97091 5.04536 5.05664 5.06104 5.06406 5.15295 5.28890 5.37916 5.48534 5.68155 5.75118 5.82408 6.05748 6.24957 6.32191 6.60230 6.73435 6.85671 7.34194 8.86623 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.002277 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.635616 B =12291.949797 C =13052.253818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.026 3.974 3 C -0.149 4.149 4 C -0.512 4.512 5 H 0.037 0.963 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.927 3.073 9 H -0.285 1.285 10 H -0.313 1.313 11 H -0.197 1.197 12 C 0.152 3.848 13 N -0.680 5.680 14 C 0.507 3.493 15 O -0.541 6.541 16 C 0.516 3.484 17 O -0.516 6.516 18 N -0.627 5.627 19 C 0.145 3.855 20 C -0.112 4.112 21 C -0.073 4.073 22 C 0.008 3.992 23 C 0.033 3.967 24 C -0.123 4.123 25 O -0.329 6.329 26 C 0.205 3.795 27 O -0.319 6.319 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.264 0.736 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.416 0.584 38 H 0.438 0.562 39 H 0.181 0.819 40 H 0.173 0.827 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 5.857 31.012 31.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 C -0.206 4.206 4 C -0.550 4.550 5 H 0.055 0.945 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.756 3.244 9 H -0.213 1.213 10 H -0.242 1.242 11 H -0.121 1.121 12 C 0.029 3.971 13 N -0.333 5.333 14 C 0.287 3.713 15 O -0.419 6.419 16 C 0.298 3.702 17 O -0.391 6.391 18 N -0.276 5.276 19 C 0.050 3.950 20 C -0.131 4.131 21 C -0.092 4.092 22 C -0.037 4.037 23 C -0.012 4.012 24 C -0.144 4.144 25 O -0.246 6.246 26 C 0.094 3.906 27 O -0.236 6.236 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.255 0.745 38 H 0.279 0.721 39 H 0.198 0.802 40 H 0.190 0.810 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.461 5.982 30.820 31.711 hybrid contribution -0.464 0.427 -1.150 1.311 sum -4.925 6.409 29.670 30.751 Atomic orbital electron populations 1.22331 0.96399 1.00866 1.00881 1.18681 0.93590 0.93187 0.92068 1.22314 1.01286 0.96882 1.00136 1.20957 1.30126 1.13815 0.90123 0.94506 1.25773 0.95805 1.00695 0.95492 1.70099 1.50089 1.38139 0.99898 0.86669 0.78942 0.80531 0.78209 1.21265 1.24212 1.12091 1.21346 0.98471 0.95442 0.81792 1.45978 1.51003 1.31553 1.04750 1.19904 0.81802 0.84816 0.84805 1.90768 1.38037 1.26287 1.86841 1.20209 0.80993 0.84020 0.84964 1.90811 1.36595 1.24949 1.86731 1.42960 1.46328 1.35743 1.02555 1.17320 0.91075 0.99132 0.87428 1.21057 1.01039 1.01191 0.89853 1.20236 0.91128 0.97137 1.00677 1.20134 0.96002 1.00298 0.87264 1.19604 0.86723 0.99321 0.95591 1.19888 0.95173 1.01836 0.97479 1.87361 1.33276 1.77330 1.26634 1.26129 0.83285 1.06765 0.74410 1.87344 1.19186 1.74239 1.42788 0.92236 0.93361 0.93515 0.92885 0.94517 0.91672 0.92721 0.91926 0.92222 0.74546 0.72115 0.80174 0.80959 0.85377 0.87641 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 7.48 71.98 0.54 -5.06 16 2 C 0.03 1.07 0.50 -52.93 -0.03 1.04 16 3 C -0.15 -5.55 7.61 71.98 0.55 -5.00 16 4 C -0.51 -27.22 8.62 25.60 0.22 -27.00 16 5 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 6 C 0.02 1.12 5.33 84.66 0.45 1.57 16 7 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 8 Si 0.93 42.06 22.89 68.60 1.57 43.63 16 9 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 11 H -0.20 -7.64 4.36 99.48 0.43 -7.21 16 12 C 0.15 5.62 4.50 86.38 0.39 6.01 16 13 N -0.68 -20.62 4.99 -464.52 -2.32 -22.94 16 14 C 0.51 14.57 7.88 87.23 0.69 15.26 16 15 O -0.54 -17.51 16.48 -3.28 -0.05 -17.57 16 16 C 0.52 12.89 7.62 87.23 0.66 13.56 16 17 O -0.52 -14.96 14.17 -3.38 -0.05 -15.01 16 18 N -0.63 -11.76 5.33 -304.79 -1.62 -13.38 16 19 C 0.14 2.67 6.27 38.17 0.24 2.91 16 20 C -0.11 -1.34 9.96 22.41 0.22 -1.12 16 21 C -0.07 -0.92 10.05 22.33 0.22 -0.70 16 22 C 0.01 0.14 7.15 22.61 0.16 0.31 16 23 C 0.03 0.73 7.15 22.58 0.16 0.89 16 24 C -0.12 -2.84 8.66 22.47 0.19 -2.65 16 25 O -0.33 -7.06 11.40 -76.19 -0.87 -7.93 16 26 C 0.20 2.57 8.89 113.37 1.01 3.58 16 27 O -0.32 -5.48 11.41 -77.03 -0.88 -6.36 16 28 H 0.06 1.85 7.08 -2.39 -0.02 1.83 16 29 H 0.05 1.93 3.85 -2.39 -0.01 1.93 16 30 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.43 2.61 -2.39 -0.01 1.42 16 33 H 0.06 1.97 6.86 -2.38 -0.02 1.96 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.42 11.65 5.70 -92.71 -0.53 11.12 16 38 H 0.44 6.22 8.30 -92.71 -0.77 5.45 16 39 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.13 3.42 6.43 -2.91 -0.02 3.40 16 42 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.97 348.98 1.29 -70.68 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.47 Total: 22.51 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.69 Total: 3.60 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.64 Total: -93.56 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.85 Total: -46.86 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.57 Total: 43.63 kcal Total: -71.97 1.29 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411630146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.468 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds