Wall clock time and date at job start Tue Mar 31 2020 17:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.50705 * 109.46815 * 240.00380 * 2 1 3 5 5 H 1.08001 * 119.99389 * 240.00248 * 4 2 1 6 6 C 1.37871 * 120.00429 * 59.99883 * 4 2 1 7 7 N 1.31519 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00079 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47305 * 90.00257 * 8 6 4 10 10 H 1.48504 * 109.47168 * 209.99768 * 8 6 4 11 11 H 1.48494 * 109.47178 * 330.00053 * 8 6 4 12 12 C 1.52998 * 109.47379 * 120.00090 * 2 1 3 13 13 N 1.46498 * 109.46961 * 299.99990 * 12 2 1 14 14 C 1.34780 * 119.99675 * 180.02562 * 13 12 2 15 15 O 1.21352 * 120.00364 * 359.97438 * 14 13 12 16 16 C 1.49339 * 119.99525 * 180.02562 * 14 13 12 17 17 O 1.21379 * 120.00404 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99525 * 180.02562 * 16 14 13 19 19 C 1.39893 * 119.99621 * 185.52702 * 18 16 14 20 20 C 1.38908 * 120.05566 * 24.83162 * 19 18 16 21 21 C 1.38131 * 120.05669 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.21103 * 0.02562 * 21 20 19 23 23 C 1.38640 * 120.17806 * 0.02562 * 22 21 20 24 24 C 1.39101 * 119.87215 * 359.67519 * 23 22 21 25 25 O 1.36556 * 108.67427 * 179.77641 * 24 23 22 26 26 C 1.43989 * 105.54206 * 343.16853 * 25 24 23 27 27 O 1.36519 * 131.47725 * 179.97438 * 23 22 21 28 28 H 1.09003 * 109.46675 * 299.99924 * 1 2 3 29 29 H 1.08997 * 109.47160 * 59.99618 * 1 2 3 30 30 H 1.08993 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47451 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47167 * 299.99766 * 3 2 1 33 33 H 1.08993 * 109.47275 * 60.00467 * 3 2 1 34 34 H 0.97003 * 120.00045 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47175 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47049 * 59.99646 * 12 2 1 37 37 H 0.96999 * 120.00033 * 359.97438 * 13 12 2 38 38 H 0.96996 * 120.00349 * 5.80406 * 18 16 14 39 39 H 1.08002 * 119.97080 * 359.97137 * 20 19 18 40 40 H 1.08002 * 119.89615 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.91145 * 179.97438 * 22 21 20 42 42 H 1.09000 * 110.57945 * 268.27083 * 26 25 24 43 43 H 1.09000 * 110.70693 * 145.44274 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1616 -4.4120 10 1 2.4864 -0.1413 -5.1124 11 1 3.6291 -1.7583 -3.7123 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0306 2.4453 14 6 1.8779 -0.4909 3.6694 15 8 2.5756 -1.4775 3.7808 16 6 1.3796 0.2128 4.8888 17 8 0.6814 1.1994 4.7775 18 7 1.7061 -0.2471 6.1129 19 6 1.1471 0.3404 7.2528 20 6 -0.0722 1.0004 7.1685 21 6 -0.6240 1.5809 8.2939 22 6 0.0342 1.5085 9.5080 23 6 1.2522 0.8531 9.6024 24 6 1.8098 0.2611 8.4739 25 8 3.0003 -0.3098 8.8225 26 6 3.3560 0.2811 10.0865 27 8 2.0874 0.6452 10.6621 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.7086 1.1614 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9944 0.7582 2.3564 38 1 2.3318 -0.9827 6.2036 39 1 -0.5890 1.0603 6.2220 40 1 -1.5720 2.0938 8.2253 41 1 -0.4014 1.9645 10.3848 42 1 3.9758 1.1649 9.9354 43 1 3.8701 -0.4425 10.7191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411648955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:12 Heat of formation + Delta-G solvation = -95.053295 kcal Electronic energy + Delta-G solvation = -28228.741199 eV Core-core repulsion = 24047.758461 eV Total energy + Delta-G solvation = -4180.982738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.53150 -40.90118 -39.00769 -37.68944 -36.70653 -36.54891 -34.96130 -33.36834 -30.95853 -30.28171 -29.93696 -26.50458 -26.16981 -25.76712 -25.36802 -24.24904 -23.40166 -22.28786 -20.37922 -19.26919 -18.83535 -18.49130 -17.97070 -17.50117 -16.83501 -16.45513 -15.96145 -15.84825 -15.57252 -14.99426 -14.96608 -14.67602 -14.49900 -14.36636 -13.70435 -13.63381 -13.32947 -13.24088 -12.98143 -12.80108 -12.60744 -12.27745 -12.13699 -11.49962 -11.44547 -11.39905 -11.21072 -10.91521 -10.74305 -10.72110 -10.44394 -10.23200 -9.70066 -9.64080 -9.32808 -8.84753 -8.70752 -8.50360 -8.41044 -8.33439 -6.06007 -4.16916 0.66894 0.84159 1.56093 2.27121 2.38463 3.06961 3.16694 3.26064 3.33431 3.36628 3.42591 3.66014 4.26412 4.33529 4.35675 4.49228 4.58555 4.76704 4.80930 5.00796 5.03700 5.20838 5.28887 5.61807 5.84768 5.93234 6.04143 6.10047 6.17461 6.21784 6.41200 6.53016 6.73528 6.78818 6.80014 6.85577 6.89825 6.95620 7.28200 7.46138 7.50728 7.64991 7.78178 7.96116 8.06599 8.21025 8.34616 8.83252 9.49262 10.95434 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.002190 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.146709 B =12784.825547 C =13378.788507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.499 3.501 15 O -0.529 6.529 16 C 0.510 3.490 17 O -0.496 6.496 18 N -0.644 5.644 19 C 0.178 3.822 20 C -0.124 4.124 21 C -0.085 4.085 22 C -0.119 4.119 23 C 0.053 3.947 24 C -0.004 4.004 25 O -0.307 6.307 26 C 0.216 3.784 27 O -0.308 6.308 28 H 0.008 0.992 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.427 0.573 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.084 0.916 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 2.013 23.746 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.006 3.994 13 N -0.328 5.328 14 C 0.277 3.723 15 O -0.407 6.407 16 C 0.293 3.707 17 O -0.370 6.370 18 N -0.290 5.290 19 C 0.082 3.918 20 C -0.144 4.144 21 C -0.103 4.103 22 C -0.138 4.138 23 C 0.008 3.992 24 C -0.050 4.050 25 O -0.224 6.224 26 C 0.104 3.896 27 O -0.224 6.224 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.266 0.734 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.102 0.898 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.592 1.949 23.599 23.687 hybrid contribution 0.706 -0.496 -0.642 1.075 sum 0.114 1.453 22.957 23.003 Atomic orbital electron populations 1.21866 0.97553 0.99338 1.00429 1.18387 0.93001 0.92868 0.90200 1.21865 0.98676 0.98233 1.00429 1.20938 1.31764 1.12200 0.89737 0.92326 1.24881 0.94814 0.94894 0.98897 1.69805 1.36454 1.22634 1.23353 0.86548 0.79295 0.79371 0.82517 1.20686 1.21245 1.19901 1.22000 0.98687 0.96117 0.82640 1.46225 1.50240 1.31322 1.04979 1.19644 0.82716 0.85303 0.84609 1.90759 1.37636 1.25751 1.86530 1.20716 0.81014 0.84254 0.84678 1.90727 1.35693 1.24046 1.86498 1.43168 1.45895 1.36405 1.03513 1.16805 0.93281 0.99443 0.82285 1.21355 0.92690 0.99051 1.01311 1.20879 0.99964 0.98930 0.90553 1.20121 0.92910 1.01364 0.99418 1.19522 0.95043 1.00280 0.84394 1.19328 0.89460 1.01852 0.94404 1.87359 1.35135 1.61879 1.37998 1.25607 0.85925 0.97921 0.80154 1.87368 1.21398 1.85250 1.28426 0.97277 0.89379 0.95291 0.95299 0.89383 0.97270 0.92904 0.91814 0.91796 0.75068 0.73437 0.82024 0.83750 0.84527 0.89806 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -12.92 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.22 9.35 55.43 0.52 -22.70 16 8 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.13 2.57 4.50 -4.04 -0.02 2.55 16 13 N -0.68 -11.94 4.95 -60.77 -0.30 -12.24 16 14 C 0.50 8.38 7.89 -11.64 -0.09 8.28 16 15 O -0.53 -9.85 16.48 5.50 0.09 -9.76 16 16 C 0.51 7.52 7.69 -11.64 -0.09 7.43 16 17 O -0.50 -7.73 13.64 5.47 0.07 -7.65 16 18 N -0.64 -8.30 5.36 -10.21 -0.05 -8.35 16 19 C 0.18 2.18 6.44 -83.59 -0.54 1.64 16 20 C -0.12 -1.39 8.71 -39.37 -0.34 -1.73 16 21 C -0.08 -0.73 10.03 -39.60 -0.40 -1.13 16 22 C -0.12 -1.04 10.06 -39.41 -0.40 -1.44 16 23 C 0.05 0.56 7.14 -39.11 -0.28 0.28 16 24 C 0.00 -0.05 7.05 -38.92 -0.27 -0.32 16 25 O -0.31 -3.34 11.40 -45.88 -0.52 -3.86 16 26 C 0.22 1.62 8.90 101.05 0.90 2.52 16 27 O -0.31 -3.04 11.40 -45.75 -0.52 -3.57 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 29 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 33 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.41 7.06 5.63 -40.82 -0.23 6.83 16 38 H 0.43 5.18 8.26 -40.82 -0.34 4.84 16 39 H 0.16 1.93 5.78 -52.49 -0.30 1.63 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -28.87 358.23 -6.85 -35.72 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.14 Total: 9.36 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.38 Total: 2.33 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.16 Total: -43.29 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.88 Total: -24.84 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.87 -6.85 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411648955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.332 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds