Wall clock time and date at job start Tue Mar 31 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.50705 * 109.46815 * 240.00380 * 2 1 3 5 5 H 1.08001 * 119.99389 * 240.00248 * 4 2 1 6 6 C 1.37871 * 120.00429 * 59.99883 * 4 2 1 7 7 N 1.31519 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00079 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47305 * 90.00257 * 8 6 4 10 10 H 1.48504 * 109.47168 * 209.99768 * 8 6 4 11 11 H 1.48494 * 109.47178 * 330.00053 * 8 6 4 12 12 C 1.52998 * 109.47379 * 120.00090 * 2 1 3 13 13 N 1.46498 * 109.46961 * 299.99990 * 12 2 1 14 14 C 1.34780 * 119.99675 * 180.02562 * 13 12 2 15 15 O 1.21352 * 120.00364 * 359.97438 * 14 13 12 16 16 C 1.49339 * 119.99525 * 180.02562 * 14 13 12 17 17 O 1.21379 * 120.00404 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99525 * 180.02562 * 16 14 13 19 19 C 1.39893 * 119.99621 * 185.52702 * 18 16 14 20 20 C 1.38908 * 120.05566 * 24.83162 * 19 18 16 21 21 C 1.38131 * 120.05669 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.21103 * 0.02562 * 21 20 19 23 23 C 1.38640 * 120.17806 * 0.02562 * 22 21 20 24 24 C 1.39101 * 119.87215 * 359.67519 * 23 22 21 25 25 O 1.36556 * 108.67427 * 179.77641 * 24 23 22 26 26 C 1.43989 * 105.54206 * 343.16853 * 25 24 23 27 27 O 1.36519 * 131.47725 * 179.97438 * 23 22 21 28 28 H 1.09003 * 109.46675 * 299.99924 * 1 2 3 29 29 H 1.08997 * 109.47160 * 59.99618 * 1 2 3 30 30 H 1.08993 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47451 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47167 * 299.99766 * 3 2 1 33 33 H 1.08993 * 109.47275 * 60.00467 * 3 2 1 34 34 H 0.97003 * 120.00045 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47175 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47049 * 59.99646 * 12 2 1 37 37 H 0.96999 * 120.00033 * 359.97438 * 13 12 2 38 38 H 0.96996 * 120.00349 * 5.80406 * 18 16 14 39 39 H 1.08002 * 119.97080 * 359.97137 * 20 19 18 40 40 H 1.08002 * 119.89615 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.91145 * 179.97438 * 22 21 20 42 42 H 1.09000 * 110.57945 * 268.27083 * 26 25 24 43 43 H 1.09000 * 110.70693 * 145.44274 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1616 -4.4120 10 1 2.4864 -0.1413 -5.1124 11 1 3.6291 -1.7583 -3.7123 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0306 2.4453 14 6 1.8779 -0.4909 3.6694 15 8 2.5756 -1.4775 3.7808 16 6 1.3796 0.2128 4.8888 17 8 0.6814 1.1994 4.7775 18 7 1.7061 -0.2471 6.1129 19 6 1.1471 0.3404 7.2528 20 6 -0.0722 1.0004 7.1685 21 6 -0.6240 1.5809 8.2939 22 6 0.0342 1.5085 9.5080 23 6 1.2522 0.8531 9.6024 24 6 1.8098 0.2611 8.4739 25 8 3.0003 -0.3098 8.8225 26 6 3.3560 0.2811 10.0865 27 8 2.0874 0.6452 10.6621 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.7086 1.1614 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9944 0.7582 2.3564 38 1 2.3318 -0.9827 6.2036 39 1 -0.5890 1.0603 6.2220 40 1 -1.5720 2.0938 8.2253 41 1 -0.4014 1.9645 10.3848 42 1 3.9758 1.1649 9.9354 43 1 3.8701 -0.4425 10.7191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411648955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:11 Heat of formation + Delta-G solvation = -114.096260 kcal Electronic energy + Delta-G solvation = -28229.566964 eV Core-core repulsion = 24047.758461 eV Total energy + Delta-G solvation = -4181.808503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.27302 -42.06729 -40.27573 -38.61866 -38.24478 -37.43679 -36.00366 -34.97856 -32.77317 -31.01431 -30.81860 -27.98903 -27.57904 -27.23631 -26.79302 -25.52959 -24.21702 -23.30044 -21.57914 -20.75709 -20.19802 -19.36741 -18.79625 -18.40764 -18.01955 -17.65468 -17.25282 -17.09499 -16.72229 -16.54968 -16.18629 -15.74182 -15.64964 -15.24194 -15.14563 -14.78606 -14.60254 -14.34725 -14.06565 -14.05133 -13.91913 -13.46060 -13.21729 -13.11795 -12.94598 -12.70361 -12.59971 -12.46176 -12.27686 -12.25597 -12.11335 -11.55997 -11.50537 -11.30084 -10.78951 -10.67304 -10.41231 -10.17955 -9.31973 -9.13979 -8.01463 -6.17692 -0.26915 0.06742 0.45916 1.09765 1.44525 1.47846 1.55545 1.69099 1.97284 2.39779 2.44376 2.52459 2.57195 3.22680 3.26667 3.50498 3.78062 3.90208 4.06418 4.17949 4.27110 4.33197 4.36075 4.46616 4.48842 4.67971 4.82160 4.91330 5.04443 5.04709 5.10665 5.17559 5.17814 5.18012 5.34179 5.44026 5.48003 5.65563 5.68142 5.77035 6.03029 6.12453 6.18625 6.23789 6.41419 6.52849 6.81312 6.88930 7.50365 8.97732 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.002190 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.146709 B =12784.825547 C =13378.788507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 C -0.125 4.125 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.142 3.858 13 N -0.675 5.675 14 C 0.503 3.497 15 O -0.547 6.547 16 C 0.519 3.481 17 O -0.506 6.506 18 N -0.633 5.633 19 C 0.151 3.849 20 C -0.136 4.136 21 C -0.074 4.074 22 C -0.110 4.110 23 C 0.042 3.958 24 C -0.015 4.015 25 O -0.325 6.325 26 C 0.207 3.793 27 O -0.316 6.316 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.416 0.584 38 H 0.429 0.571 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.166 0.834 42 H 0.101 0.899 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 2.490 25.776 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.019 3.981 13 N -0.327 5.327 14 C 0.283 3.717 15 O -0.426 6.426 16 C 0.301 3.699 17 O -0.380 6.380 18 N -0.279 5.279 19 C 0.056 3.944 20 C -0.156 4.156 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.003 4.003 24 C -0.061 4.061 25 O -0.242 6.242 26 C 0.096 3.904 27 O -0.233 6.233 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.254 0.746 38 H 0.268 0.732 39 H 0.170 0.830 40 H 0.194 0.806 41 H 0.183 0.817 42 H 0.119 0.881 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.917 2.428 25.669 25.800 hybrid contribution 0.822 -0.636 -1.128 1.534 sum -0.094 1.791 24.541 24.606 Atomic orbital electron populations 1.21718 0.97217 0.98986 1.00360 1.18380 0.93246 0.92991 0.90370 1.21719 0.98246 0.98008 1.00331 1.21241 1.31771 1.12255 0.91165 0.93067 1.25477 0.95155 0.95564 1.01106 1.69922 1.37001 1.23348 1.23633 0.85728 0.78710 0.78382 0.79785 1.20539 1.21129 1.19842 1.21601 0.98063 0.95615 0.82782 1.46033 1.50559 1.31409 1.04709 1.19941 0.81940 0.84890 0.84942 1.90748 1.38357 1.26610 1.86893 1.20131 0.81187 0.84078 0.84494 1.90728 1.36354 1.24405 1.86553 1.43036 1.45474 1.36177 1.03245 1.17014 0.94243 1.00969 0.82141 1.21428 0.92595 0.99610 1.01940 1.21237 1.00747 0.97759 0.89536 1.20529 0.91966 1.00027 1.00394 1.19835 0.95758 1.00489 0.84249 1.19454 0.89949 1.02174 0.94551 1.87329 1.35019 1.62393 1.39447 1.26091 0.85317 0.99561 0.79423 1.87348 1.22130 1.85323 1.28483 0.94890 0.91791 0.95725 0.95786 0.91779 0.94957 0.93051 0.92578 0.92471 0.74600 0.73240 0.82975 0.80574 0.81686 0.88129 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.13 -5.56 8.08 71.98 0.58 -4.98 16 4 C -0.53 -26.94 8.01 25.60 0.21 -26.74 16 5 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.39 5.15 84.65 0.44 1.82 16 7 N -0.90 -47.66 9.35 21.45 0.20 -47.46 16 8 Si 0.95 41.87 29.54 68.60 2.03 43.89 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.14 5.72 4.50 86.38 0.39 6.11 16 13 N -0.68 -23.44 4.95 -464.54 -2.30 -25.74 16 14 C 0.50 16.69 7.89 87.23 0.69 17.38 16 15 O -0.55 -20.28 16.48 -3.25 -0.05 -20.33 16 16 C 0.52 15.03 7.69 87.23 0.67 15.70 16 17 O -0.51 -15.37 13.64 -3.34 -0.05 -15.42 16 18 N -0.63 -16.14 5.36 -304.56 -1.63 -17.77 16 19 C 0.15 3.60 6.44 38.24 0.25 3.85 16 20 C -0.14 -2.87 8.71 22.40 0.20 -2.67 16 21 C -0.07 -1.10 10.03 22.26 0.22 -0.87 16 22 C -0.11 -1.62 10.06 22.38 0.23 -1.40 16 23 C 0.04 0.81 7.14 22.57 0.16 0.97 16 24 C -0.01 -0.33 7.05 22.70 0.16 -0.17 16 25 O -0.32 -6.76 11.40 -76.71 -0.87 -7.63 16 26 C 0.21 2.72 8.90 113.37 1.01 3.73 16 27 O -0.32 -5.63 11.40 -76.27 -0.87 -6.50 16 28 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 29 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 30 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 33 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 34 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.42 13.79 5.63 -92.71 -0.52 13.27 16 38 H 0.43 10.40 8.26 -92.71 -0.77 9.63 16 39 H 0.15 3.51 5.78 -2.91 -0.02 3.49 16 40 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -61.68 358.23 1.99 -59.68 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.20 Total: 27.21 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.74 Total: 10.06 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -3.73 Total: -90.96 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.84 Total: -49.88 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -61.68 1.99 -59.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411648955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.413 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds