Wall clock time and date at job start Tue Mar 31 2020 17:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99877 * 2 1 3 5 5 H 1.08997 * 109.47440 * 180.02562 * 4 2 1 6 6 N 1.46502 * 109.47294 * 300.00248 * 4 2 1 7 7 C 1.34779 * 120.00179 * 204.99690 * 6 4 2 8 8 O 1.21359 * 119.99676 * 0.02562 * 7 6 4 9 9 C 1.49353 * 119.99927 * 179.97438 * 7 6 4 10 10 O 1.21375 * 120.00087 * 0.02562 * 9 7 6 11 11 N 1.34779 * 120.00249 * 180.02562 * 9 7 6 12 12 C 1.39739 * 120.00479 * 174.89106 * 11 9 7 13 13 C 1.39343 * 119.95365 * 145.76364 * 12 11 9 14 14 C 1.38464 * 120.42657 * 179.97438 * 13 12 11 15 15 C 1.37696 * 120.32532 * 359.97438 * 14 13 12 16 16 C 1.40745 * 119.89809 * 0.02562 * 15 14 13 17 17 C 1.41418 * 120.20848 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99806 * 205.17920 * 17 16 15 19 19 C 1.39932 * 119.99952 * 25.18406 * 17 16 15 20 20 N 1.30828 * 119.99743 * 16.78379 * 19 17 16 21 21 Si 1.86802 * 119.99840 * 196.78973 * 19 17 16 22 22 H 1.48496 * 109.46967 * 59.99927 * 21 19 17 23 23 H 1.48502 * 109.46729 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47038 * 299.99740 * 21 19 17 25 25 C 1.38304 * 119.95182 * 325.49221 * 12 11 9 26 26 C 1.50704 * 109.47187 * 60.00187 * 4 2 1 27 27 O 1.20826 * 119.99778 * 240.00022 * 26 4 2 28 28 O 1.34225 * 119.99711 * 59.99718 * 26 4 2 29 29 H 1.09003 * 109.46742 * 59.99691 * 1 2 3 30 30 H 1.09002 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47073 * 299.99945 * 1 2 3 32 32 H 1.09003 * 109.46742 * 120.00309 * 2 1 3 33 33 H 1.08999 * 109.47049 * 60.00040 * 3 2 1 34 34 H 1.08997 * 109.46946 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46888 * 299.99693 * 3 2 1 36 36 H 0.96998 * 120.00162 * 25.00114 * 6 4 2 37 37 H 0.97007 * 119.99499 * 354.89194 * 11 9 7 38 38 H 1.08000 * 119.78493 * 359.95810 * 13 12 11 39 39 H 1.07997 * 119.83803 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.05188 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99747 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.16364 * 359.97438 * 25 12 11 43 43 H 0.96708 * 116.99655 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 3.1300 -0.7217 -1.2490 6 7 1.5517 -2.1025 -1.2492 7 6 2.2284 -3.0566 -1.9188 8 8 3.2426 -2.7715 -2.5212 9 6 1.7308 -4.4648 -1.9183 10 8 0.7167 -4.7499 -1.3154 11 7 2.4078 -5.4190 -2.5874 12 6 2.0038 -6.7539 -2.5001 13 6 2.1415 -7.5959 -3.6017 14 6 1.7449 -8.9204 -3.5258 15 6 1.2100 -9.4203 -2.3596 16 6 1.0646 -8.5818 -1.2386 17 6 0.5156 -9.0882 -0.0377 18 1 0.0319 -8.4195 0.6589 19 6 0.5992 -10.4555 0.2479 20 7 1.4478 -11.2090 -0.4031 21 14 -0.5011 -11.2049 1.5583 22 1 -1.9240 -11.0027 1.1848 23 1 -0.2203 -12.6590 1.6680 24 1 -0.2338 -10.5488 2.8634 25 6 1.4729 -7.2388 -1.3186 26 6 1.5377 -0.0109 -2.4797 27 8 0.8431 -0.5981 -3.2750 28 8 1.8620 1.2742 -2.6921 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 0.7412 -2.3304 -0.7675 37 1 3.1756 -5.1791 -3.1296 38 1 2.5601 -7.2130 -4.5207 39 1 1.8556 -9.5645 -4.3856 40 1 0.9017 -10.4540 -2.3055 41 1 1.5060 -12.1567 -0.2048 42 1 1.3701 -6.5883 -0.4626 43 1 1.5166 1.6872 -3.4954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422660768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:52 Heat of formation + Delta-G solvation = -139.093379 kcal Electronic energy + Delta-G solvation = -28307.423199 eV Core-core repulsion = 24124.530740 eV Total energy + Delta-G solvation = -4182.892459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32086 -40.27381 -38.76790 -37.16265 -36.97502 -36.46803 -34.71791 -33.52762 -32.97713 -29.87677 -28.81437 -28.12933 -27.53402 -25.37241 -24.54870 -22.95847 -21.34728 -20.88434 -20.52666 -19.85358 -18.60239 -18.33492 -17.67107 -17.01620 -16.82721 -16.22045 -15.68558 -15.52591 -15.37409 -14.99188 -14.63831 -14.59432 -14.14961 -13.91830 -13.77884 -13.44436 -13.10082 -13.02197 -12.90125 -12.47546 -12.22965 -11.93141 -11.75352 -11.61507 -11.53763 -11.39567 -11.28464 -11.19599 -11.13374 -10.94000 -10.92395 -10.51790 -10.15037 -9.73494 -9.67581 -9.49018 -9.11428 -9.05645 -7.50158 -7.01085 -6.74911 -4.37299 1.39820 1.88939 2.19253 2.64088 2.79890 2.97378 3.07564 3.10744 3.20737 3.52570 3.74809 3.94351 4.04414 4.36574 4.54455 4.61248 4.64920 4.80651 4.98286 5.04439 5.27001 5.41287 5.47188 5.59149 5.66372 5.78325 5.86393 6.00587 6.16465 6.20447 6.35451 6.57324 6.75202 6.96678 6.98206 7.02044 7.20835 7.38435 7.55358 7.63412 7.68378 7.89464 8.01967 8.06834 8.13916 8.42511 8.63085 8.89092 8.93305 10.18923 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.002577 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.039508 B =10861.934476 C =11973.841825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.157 4.157 4 C 0.159 3.841 5 H 0.132 0.868 6 N -0.688 5.688 7 C 0.522 3.478 8 O -0.518 6.518 9 C 0.500 3.500 10 O -0.495 6.495 11 N -0.631 5.631 12 C 0.144 3.856 13 C -0.254 4.254 14 C -0.091 4.091 15 C -0.168 4.168 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.208 4.208 26 C 0.468 3.532 27 O -0.499 6.499 28 O -0.508 6.508 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.421 0.579 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.281 0.719 42 H 0.106 0.894 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 21.372 0.760 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.117 4.117 3 C -0.214 4.214 4 C 0.051 3.949 5 H 0.149 0.851 6 N -0.344 5.344 7 C 0.303 3.697 8 O -0.393 6.393 9 C 0.281 3.719 10 O -0.370 6.370 11 N -0.276 5.276 12 C 0.053 3.947 13 C -0.275 4.275 14 C -0.110 4.110 15 C -0.187 4.187 16 C 0.117 3.883 17 C -0.488 4.488 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.230 4.230 26 C 0.308 3.692 27 O -0.385 6.385 28 O -0.320 6.320 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.260 0.740 37 H 0.247 0.753 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.463 20.782 0.899 20.853 hybrid contribution -0.598 -0.130 -0.177 0.637 sum 0.866 20.652 0.722 20.683 Atomic orbital electron populations 1.21988 0.94058 1.02732 1.02867 1.21402 0.97047 0.97649 0.95590 1.22050 1.01777 0.94024 1.03572 1.20667 1.02086 0.81060 0.91045 0.85100 1.45502 1.30263 1.05814 1.52777 1.20441 0.83686 0.86943 0.78598 1.90741 1.24178 1.82784 1.41585 1.19727 0.84808 0.85478 0.81913 1.90821 1.22812 1.81658 1.41667 1.43112 1.31389 1.06046 1.47087 1.17443 1.01774 0.80317 0.95175 1.20074 1.15983 0.95132 0.96343 1.20477 0.99458 0.93813 0.97292 1.21393 1.04705 1.00768 0.91856 1.17465 0.88135 0.89940 0.92777 1.19547 1.32578 0.92648 1.04005 0.90308 1.25908 0.94046 0.97267 0.96971 1.69813 1.27718 1.07401 1.37017 0.86342 0.81308 0.77900 0.81031 1.18780 1.20358 1.18992 1.20959 1.09290 0.97196 0.95513 1.23911 0.77493 0.80099 0.87734 1.90772 1.35186 1.66587 1.46001 1.84617 1.72712 1.26743 1.47975 0.92527 0.91862 0.90996 0.88302 0.91771 0.91945 0.89956 0.74005 0.75339 0.88956 0.88775 0.86158 0.90801 0.87569 0.73448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.78 37.16 0.33 -0.77 16 2 C -0.10 -0.65 2.91 -90.62 -0.26 -0.92 16 3 C -0.16 -0.84 8.67 37.16 0.32 -0.52 16 4 C 0.16 1.53 2.35 -69.08 -0.16 1.37 16 5 H 0.13 1.22 7.58 -51.93 -0.39 0.83 16 6 N -0.69 -8.50 4.52 -55.39 -0.25 -8.75 16 7 C 0.52 8.19 7.72 -11.63 -0.09 8.10 16 8 O -0.52 -8.65 16.15 5.49 0.09 -8.56 16 9 C 0.50 9.36 7.61 -11.63 -0.09 9.27 16 10 O -0.50 -10.46 14.23 5.48 0.08 -10.38 16 11 N -0.63 -12.15 5.32 -10.34 -0.06 -12.21 16 12 C 0.14 3.31 6.25 -83.82 -0.52 2.78 16 13 C -0.25 -5.67 9.97 -39.09 -0.39 -6.06 16 14 C -0.09 -2.13 10.01 -39.70 -0.40 -2.53 16 15 C -0.17 -4.36 8.69 -38.83 -0.34 -4.70 16 16 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 17 C -0.46 -12.34 9.05 -37.74 -0.34 -12.69 16 18 H 0.08 2.07 7.90 -52.49 -0.41 1.66 16 19 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 20 N -0.79 -20.43 10.94 55.55 0.61 -19.82 16 21 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 C -0.21 -5.32 8.39 -38.67 -0.32 -5.65 16 26 C 0.47 4.97 6.33 36.01 0.23 5.20 16 27 O -0.50 -7.31 17.08 -18.75 -0.32 -7.63 16 28 O -0.51 -3.48 10.34 -39.24 -0.41 -3.89 16 29 H 0.06 0.43 7.22 -51.93 -0.37 0.05 16 30 H 0.06 0.48 6.50 -51.93 -0.34 0.14 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.47 5.32 -51.93 -0.28 0.19 16 36 H 0.42 4.89 6.34 -40.82 -0.26 4.64 16 37 H 0.41 6.86 8.30 -40.82 -0.34 6.52 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 40 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 41 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 42 H 0.11 2.73 6.48 -52.49 -0.34 2.39 16 43 H 0.41 1.32 9.10 45.56 0.41 1.74 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -32.93 364.82 -6.83 -39.76 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -4.31 Total: 14.86 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.73 Total: -2.62 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.30 Total: -40.78 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.56 Total: -30.46 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.93 -6.83 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422660768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.335 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds