Wall clock time and date at job start Tue Mar 31 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99877 * 2 1 3 5 5 H 1.08997 * 109.47440 * 180.02562 * 4 2 1 6 6 N 1.46502 * 109.47294 * 300.00248 * 4 2 1 7 7 C 1.34779 * 120.00179 * 204.99690 * 6 4 2 8 8 O 1.21359 * 119.99676 * 0.02562 * 7 6 4 9 9 C 1.49353 * 119.99927 * 179.97438 * 7 6 4 10 10 O 1.21375 * 120.00087 * 0.02562 * 9 7 6 11 11 N 1.34779 * 120.00249 * 180.02562 * 9 7 6 12 12 C 1.39739 * 120.00479 * 174.89106 * 11 9 7 13 13 C 1.39343 * 119.95365 * 145.76364 * 12 11 9 14 14 C 1.38464 * 120.42657 * 179.97438 * 13 12 11 15 15 C 1.37696 * 120.32532 * 359.97438 * 14 13 12 16 16 C 1.40745 * 119.89809 * 0.02562 * 15 14 13 17 17 C 1.41418 * 120.20848 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99806 * 205.17920 * 17 16 15 19 19 C 1.39932 * 119.99952 * 25.18406 * 17 16 15 20 20 N 1.30828 * 119.99743 * 16.78379 * 19 17 16 21 21 Si 1.86802 * 119.99840 * 196.78973 * 19 17 16 22 22 H 1.48496 * 109.46967 * 59.99927 * 21 19 17 23 23 H 1.48502 * 109.46729 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47038 * 299.99740 * 21 19 17 25 25 C 1.38304 * 119.95182 * 325.49221 * 12 11 9 26 26 C 1.50704 * 109.47187 * 60.00187 * 4 2 1 27 27 O 1.20826 * 119.99778 * 240.00022 * 26 4 2 28 28 O 1.34225 * 119.99711 * 59.99718 * 26 4 2 29 29 H 1.09003 * 109.46742 * 59.99691 * 1 2 3 30 30 H 1.09002 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47073 * 299.99945 * 1 2 3 32 32 H 1.09003 * 109.46742 * 120.00309 * 2 1 3 33 33 H 1.08999 * 109.47049 * 60.00040 * 3 2 1 34 34 H 1.08997 * 109.46946 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46888 * 299.99693 * 3 2 1 36 36 H 0.96998 * 120.00162 * 25.00114 * 6 4 2 37 37 H 0.97007 * 119.99499 * 354.89194 * 11 9 7 38 38 H 1.08000 * 119.78493 * 359.95810 * 13 12 11 39 39 H 1.07997 * 119.83803 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.05188 * 179.97438 * 15 14 13 41 41 H 0.97001 * 119.99747 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.16364 * 359.97438 * 25 12 11 43 43 H 0.96708 * 116.99655 * 179.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 3.1300 -0.7217 -1.2490 6 7 1.5517 -2.1025 -1.2492 7 6 2.2284 -3.0566 -1.9188 8 8 3.2426 -2.7715 -2.5212 9 6 1.7308 -4.4648 -1.9183 10 8 0.7167 -4.7499 -1.3154 11 7 2.4078 -5.4190 -2.5874 12 6 2.0038 -6.7539 -2.5001 13 6 2.1415 -7.5959 -3.6017 14 6 1.7449 -8.9204 -3.5258 15 6 1.2100 -9.4203 -2.3596 16 6 1.0646 -8.5818 -1.2386 17 6 0.5156 -9.0882 -0.0377 18 1 0.0319 -8.4195 0.6589 19 6 0.5992 -10.4555 0.2479 20 7 1.4478 -11.2090 -0.4031 21 14 -0.5011 -11.2049 1.5583 22 1 -1.9240 -11.0027 1.1848 23 1 -0.2203 -12.6590 1.6680 24 1 -0.2338 -10.5488 2.8634 25 6 1.4729 -7.2388 -1.3186 26 6 1.5377 -0.0109 -2.4797 27 8 0.8431 -0.5981 -3.2750 28 8 1.8620 1.2742 -2.6921 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 0.7412 -2.3304 -0.7675 37 1 3.1756 -5.1791 -3.1296 38 1 2.5601 -7.2130 -4.5207 39 1 1.8556 -9.5645 -4.3856 40 1 0.9017 -10.4540 -2.3055 41 1 1.5060 -12.1567 -0.2048 42 1 1.3701 -6.5883 -0.4626 43 1 1.5166 1.6872 -3.4954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422660768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:51 Heat of formation + Delta-G solvation = -162.524407 kcal Electronic energy + Delta-G solvation = -28308.439244 eV Core-core repulsion = 24124.530740 eV Total energy + Delta-G solvation = -4183.908505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39038 -41.50413 -40.13874 -38.91439 -37.82698 -37.25882 -36.40207 -34.98108 -34.31591 -31.79861 -30.41386 -29.15369 -28.09501 -27.29986 -25.89543 -23.83884 -22.99074 -22.58099 -21.43803 -21.16907 -20.04279 -19.31938 -19.12064 -18.12122 -17.94506 -17.47996 -17.06946 -16.96782 -16.60106 -16.52780 -16.44262 -15.50812 -15.35748 -15.19906 -14.81516 -14.67670 -14.55278 -14.17856 -14.02457 -13.65594 -13.57856 -13.12314 -13.07148 -12.99052 -12.88417 -12.70687 -12.61976 -12.23526 -12.20275 -11.95907 -11.94298 -11.92388 -11.62857 -11.56641 -11.21790 -10.94834 -10.77395 -10.65876 -9.43872 -8.86536 -8.63434 -6.38112 -0.00073 0.92975 0.97769 1.07028 1.09060 1.38355 1.49348 1.53026 1.85755 2.14087 2.21530 2.49929 2.72192 3.22798 3.39229 3.69836 3.75176 3.98011 4.15749 4.30009 4.42344 4.51074 4.57190 4.75204 4.83016 4.86718 4.89506 5.03737 5.04955 5.06803 5.09400 5.16555 5.27868 5.29641 5.50250 5.54116 5.58225 5.74039 5.82427 6.02871 6.05963 6.25474 6.27089 6.52940 6.63838 6.83651 6.89121 6.93872 6.98786 8.32514 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.002577 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.039508 B =10861.934476 C =11973.841825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.154 4.154 4 C 0.151 3.849 5 H 0.140 0.860 6 N -0.675 5.675 7 C 0.530 3.470 8 O -0.528 6.528 9 C 0.498 3.502 10 O -0.523 6.523 11 N -0.628 5.628 12 C 0.149 3.851 13 C -0.248 4.248 14 C -0.089 4.089 15 C -0.193 4.193 16 C 0.091 3.909 17 C -0.499 4.499 18 H 0.069 0.931 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.263 1.263 24 H -0.261 1.261 25 C -0.231 4.231 26 C 0.475 3.525 27 O -0.546 6.546 28 O -0.492 6.492 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.424 0.576 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.290 0.710 42 H 0.093 0.907 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 22.940 0.880 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 C -0.211 4.211 4 C 0.045 3.955 5 H 0.157 0.843 6 N -0.330 5.330 7 C 0.310 3.690 8 O -0.405 6.405 9 C 0.279 3.721 10 O -0.399 6.399 11 N -0.274 5.274 12 C 0.057 3.943 13 C -0.269 4.269 14 C -0.108 4.108 15 C -0.213 4.213 16 C 0.088 3.912 17 C -0.528 4.528 18 H 0.087 0.913 19 C -0.178 4.178 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.187 1.187 24 H -0.185 1.185 25 C -0.252 4.252 26 C 0.316 3.684 27 O -0.436 6.436 28 O -0.305 6.305 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.264 0.736 37 H 0.263 0.737 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 1.952 22.429 1.007 22.536 hybrid contribution -0.689 -0.432 -0.293 0.865 sum 1.263 21.997 0.714 22.045 Atomic orbital electron populations 1.22014 0.94280 1.02125 1.03371 1.21451 0.96770 0.98369 0.94309 1.22042 1.02145 0.92759 1.04129 1.21054 1.02578 0.79495 0.92333 0.84290 1.45504 1.29698 1.06569 1.51209 1.19782 0.83883 0.85956 0.79339 1.90737 1.24649 1.82584 1.42493 1.20346 0.84229 0.86799 0.80700 1.90808 1.24074 1.82481 1.42505 1.43027 1.31943 1.04868 1.47556 1.17516 1.00337 0.82010 0.94470 1.20476 1.14595 0.94609 0.97258 1.20828 0.97945 0.94749 0.97263 1.21378 1.06712 1.00299 0.92882 1.17808 0.88911 0.90937 0.93519 1.19748 1.34477 0.94008 1.04576 0.91254 1.26721 0.94927 0.96919 0.99187 1.69848 1.28486 1.08033 1.38267 0.85253 0.78904 0.77575 0.77980 1.18657 1.18693 1.18503 1.20945 1.11046 0.96838 0.96419 1.23977 0.76426 0.80804 0.87163 1.90766 1.37471 1.67819 1.47542 1.84577 1.71984 1.24872 1.49037 0.93304 0.93041 0.89214 0.87066 0.90332 0.91368 0.90264 0.73647 0.73701 0.85359 0.85685 0.87451 0.89913 0.88895 0.71308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.78 71.98 0.63 -1.34 16 2 C -0.09 -1.01 2.91 -10.79 -0.03 -1.04 16 3 C -0.15 -1.21 8.67 71.98 0.62 -0.59 16 4 C 0.15 2.69 2.35 44.25 0.10 2.80 16 5 H 0.14 2.32 7.58 -2.39 -0.02 2.30 16 6 N -0.67 -16.26 4.52 -447.52 -2.02 -18.29 16 7 C 0.53 16.37 7.72 87.24 0.67 17.04 16 8 O -0.53 -17.07 16.15 -3.28 -0.05 -17.12 16 9 C 0.50 18.73 7.61 87.24 0.66 19.39 16 10 O -0.52 -22.69 14.23 -3.32 -0.05 -22.73 16 11 N -0.63 -23.92 5.32 -304.98 -1.62 -25.55 16 12 C 0.15 6.85 6.25 38.16 0.24 7.09 16 13 C -0.25 -10.73 9.97 22.59 0.23 -10.51 16 14 C -0.09 -4.09 10.01 22.20 0.22 -3.86 16 15 C -0.19 -10.28 8.69 22.75 0.20 -10.08 16 16 C 0.09 5.15 5.57 -21.31 -0.12 5.03 16 17 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 18 H 0.07 3.86 7.90 -2.91 -0.02 3.84 16 19 C 0.04 1.94 5.16 85.25 0.44 2.38 16 20 N -0.82 -43.09 10.94 21.82 0.24 -42.85 16 21 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 25 C -0.23 -12.23 8.39 22.86 0.19 -12.04 16 26 C 0.47 9.42 6.33 71.24 0.45 9.87 16 27 O -0.55 -15.70 17.08 21.96 0.38 -15.32 16 28 O -0.49 -5.64 10.34 -51.37 -0.53 -6.17 16 29 H 0.05 0.68 7.22 -2.39 -0.02 0.66 16 30 H 0.05 0.75 6.50 -2.39 -0.02 0.74 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.68 5.32 -2.39 -0.01 0.67 16 36 H 0.42 9.80 6.34 -92.71 -0.59 9.21 16 37 H 0.42 13.67 8.30 -92.70 -0.77 12.90 16 38 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.11 5.90 6.17 -2.91 -0.02 5.88 16 41 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 42 H 0.09 5.04 6.48 -2.91 -0.02 5.02 16 43 H 0.42 1.79 9.10 -74.05 -0.67 1.12 16 Total: -1.00 -73.48 364.82 2.16 -71.32 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -0.93 Total: 39.46 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.73 Total: -3.75 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.41 Total: -86.68 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -0.26 Total: -61.35 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -73.48 2.16 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422660768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.207 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds