Wall clock time and date at job start Tue Mar 31 2020 17:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47274 * 2 1 4 4 C 1.53000 * 109.46971 * 239.99932 * 2 1 3 5 5 C 1.50700 * 109.47258 * 120.00140 * 2 1 3 6 6 C 1.31884 * 122.59374 * 0.41322 * 5 2 1 7 7 S 1.75362 * 111.38792 * 180.02562 * 6 5 2 8 8 C 1.75758 * 92.18084 * 359.95170 * 7 6 5 9 9 N 1.33924 * 131.27554 * 179.97438 * 8 7 6 10 10 C 1.31267 * 121.04057 * 180.02562 * 9 8 7 11 11 N 1.32112 * 122.18075 * 0.02562 * 10 9 8 12 12 C 1.32457 * 121.18702 * 359.97438 * 11 10 9 13 13 N 1.38317 * 120.52484 * 179.72780 * 12 11 10 14 14 C 1.46497 * 120.00684 * 6.04016 * 13 12 11 15 15 C 1.50693 * 109.47613 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99692 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00447 * 180.02562 * 15 14 13 18 18 C 1.37099 * 120.00101 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99488 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99522 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00648 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47305 * 89.99417 * 22 20 18 24 24 H 1.48497 * 109.47508 * 210.00055 * 22 20 18 25 25 H 1.48500 * 109.46620 * 330.00107 * 22 20 18 26 26 C 1.39719 * 109.61643 * 0.03761 * 8 7 6 27 27 H 1.09004 * 109.46544 * 299.99976 * 1 2 3 28 28 H 1.08996 * 109.47109 * 59.99847 * 1 2 3 29 29 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47597 * 158.77206 * 3 2 1 31 31 H 1.09003 * 109.47033 * 278.76880 * 3 2 1 32 32 H 1.08998 * 109.47749 * 38.76716 * 3 2 1 33 33 H 1.09001 * 109.47012 * 318.16510 * 4 2 1 34 34 H 1.09000 * 109.46799 * 78.16393 * 4 2 1 35 35 H 1.09000 * 109.47396 * 198.16096 * 4 2 1 36 36 H 1.08001 * 124.31248 * 0.02562 * 6 5 2 37 37 H 1.07995 * 118.90526 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99373 * 186.03868 * 13 12 11 39 39 H 1.09000 * 109.46873 * 300.00317 * 14 13 12 40 40 H 1.09002 * 109.46850 * 59.99676 * 14 13 12 41 41 H 0.96998 * 119.99601 * 359.97438 * 17 15 14 42 42 H 0.97002 * 119.99590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.2216 -1.2375 2.1272 7 16 2.1164 -1.9889 3.4350 8 6 3.6610 -1.5597 2.7144 9 7 4.9176 -1.7845 3.1193 10 6 5.9415 -1.3666 2.4122 11 7 5.7908 -0.7088 1.2764 12 6 4.5868 -0.4390 0.7947 13 7 4.4448 0.2555 -0.3930 14 6 5.6257 0.5834 -1.1957 15 6 5.2010 1.3366 -2.4299 16 8 4.0273 1.5764 -2.6201 17 7 6.1252 1.7437 -3.3223 18 6 5.7387 2.4285 -4.4454 19 1 4.6936 2.6420 -4.6148 20 6 6.6917 2.8487 -5.3652 21 7 6.3211 3.5046 -6.4420 22 14 8.4993 2.4800 -5.0719 23 1 8.8438 1.1726 -5.6860 24 1 9.3283 3.5487 -5.6850 25 1 8.7627 2.4256 -3.6115 26 6 3.4452 -0.8679 1.5199 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.0642 1.4657 0.3721 31 1 2.0134 1.8372 -1.0157 32 1 1.4058 2.0522 0.6434 33 1 1.4392 -1.6138 -1.4242 34 1 1.9623 -0.0566 -2.1096 35 1 3.0817 -1.0072 -1.1039 36 1 0.1438 -1.2099 2.0644 37 1 6.9403 -1.5672 2.7709 38 1 3.5632 0.5255 -0.6945 39 1 6.3039 1.2023 -0.6082 40 1 6.1334 -0.3360 -1.4873 41 1 7.0638 1.5523 -3.1700 42 1 6.9864 3.7983 -7.0839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427177186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:28 Heat of formation + Delta-G solvation = 58.067955 kcal Electronic energy + Delta-G solvation = -26994.393399 eV Core-core repulsion = 23295.096119 eV Total energy + Delta-G solvation = -3699.297280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38051 -38.94460 -38.44305 -36.19166 -34.17928 -34.04818 -32.37948 -31.87708 -30.08650 -27.66702 -27.28188 -27.23683 -24.93275 -24.19231 -23.29958 -22.05427 -19.79703 -19.20762 -18.53785 -18.38335 -17.47449 -16.71397 -15.95029 -15.63415 -15.49898 -15.11419 -14.78825 -14.67347 -14.63098 -14.31282 -14.16776 -13.46150 -13.16393 -12.97853 -12.92762 -12.59783 -12.52961 -12.26731 -12.19673 -11.84124 -11.74924 -11.66183 -11.30443 -11.10350 -10.96337 -10.91687 -10.70974 -10.69433 -10.57967 -10.12171 -9.75930 -9.42327 -9.18937 -8.83647 -8.50416 -8.36979 -7.75515 -6.46823 -3.99544 0.50488 1.11842 1.17294 1.78461 2.09264 2.94264 2.99025 3.05056 3.09718 3.47266 3.79337 3.97913 4.14734 4.34971 4.36952 4.47001 4.65048 4.73484 4.87058 5.02479 5.07909 5.11246 5.22092 5.53745 5.58706 5.59933 5.65988 5.67183 5.73568 5.74817 5.80755 5.93175 6.02389 6.04544 6.13554 6.24049 6.32236 6.36240 6.71684 7.01774 7.38922 7.58671 7.94341 8.24294 8.37968 8.75089 9.22973 9.55391 10.65095 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.003423 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.053980 B = 8178.279705 C = 9544.255782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 C -0.174 4.174 4 C -0.169 4.169 5 C -0.035 4.035 6 C -0.224 4.224 7 S 0.143 5.857 8 C 0.123 3.877 9 N -0.544 5.544 10 C 0.357 3.643 11 N -0.588 5.588 12 C 0.488 3.512 13 N -0.684 5.684 14 C 0.101 3.899 15 C 0.435 3.565 16 O -0.577 6.577 17 N -0.573 5.573 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.046 3.954 21 N -0.872 5.872 22 Si 0.878 3.122 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.267 1.267 26 C -0.232 4.232 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.201 0.799 38 H 0.440 0.560 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.374 0.626 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -9.617 16.676 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 C -0.232 4.232 4 C -0.226 4.226 5 C -0.047 4.047 6 C -0.358 4.358 7 S 0.402 5.598 8 C -0.126 4.126 9 N -0.267 5.267 10 C 0.064 3.936 11 N -0.316 5.316 12 C 0.235 3.765 13 N -0.330 5.330 14 C -0.027 4.027 15 C 0.221 3.779 16 O -0.462 6.462 17 N -0.210 5.210 18 C -0.439 4.439 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.511 5.511 22 Si 0.704 3.296 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.192 1.192 26 C -0.251 4.251 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.192 0.808 37 H 0.217 0.783 38 H 0.297 0.703 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.208 0.792 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.369 -10.211 17.813 21.497 hybrid contribution 1.023 0.780 -1.557 2.020 sum -5.346 -9.431 16.256 19.539 Atomic orbital electron populations 1.21950 0.93185 1.02069 1.02548 1.19453 0.96460 0.94919 0.91452 1.22462 1.01794 0.94346 1.04558 1.22431 1.02203 1.01183 0.96825 1.19434 0.89777 0.98545 0.96927 1.24910 1.03643 1.08100 0.99149 1.84037 0.91448 1.59749 1.24550 1.23564 0.98019 0.96878 0.94144 1.68038 0.96775 1.26673 1.35189 1.24623 0.97708 0.86486 0.84784 1.67946 1.22774 1.23322 1.17586 1.18386 0.87698 0.85189 0.85265 1.46302 1.12855 1.55383 1.18448 1.21129 0.88401 1.00842 0.92337 1.19586 0.86910 0.85878 0.85539 1.90516 1.17242 1.60944 1.77473 1.42104 1.07617 1.50505 1.20782 1.19435 0.97561 1.31078 0.95800 0.85993 1.25072 0.98735 0.96584 0.95461 1.69618 1.34886 1.36320 1.10268 0.86682 0.84739 0.79369 0.78782 1.19367 1.19942 1.19203 1.19838 0.93878 1.11187 1.00149 0.92202 0.91437 0.92190 0.91230 0.89379 0.91747 0.92143 0.89886 0.91161 0.80785 0.78295 0.70306 0.89256 0.89524 0.79237 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.05 37.16 0.26 -1.10 16 2 C -0.02 -0.25 0.75 -155.66 -0.12 -0.37 16 3 C -0.17 -2.42 7.43 37.15 0.28 -2.14 16 4 C -0.17 -2.36 7.60 37.16 0.28 -2.07 16 5 C -0.03 -0.45 4.71 -103.82 -0.49 -0.94 16 6 C -0.22 -2.41 9.87 28.83 0.28 -2.13 16 7 S 0.14 1.59 23.23 -107.50 -2.50 -0.91 16 8 C 0.12 1.76 7.69 -16.09 -0.12 1.64 16 9 N -0.54 -7.75 10.47 -13.32 -0.14 -7.89 16 10 C 0.36 4.65 12.27 -92.33 -1.13 3.51 16 11 N -0.59 -8.74 9.67 -13.43 -0.13 -8.87 16 12 C 0.49 7.67 6.72 -154.58 -1.04 6.63 16 13 N -0.68 -11.12 3.00 -61.00 -0.18 -11.30 16 14 C 0.10 1.68 6.21 -5.20 -0.03 1.64 16 15 C 0.43 9.08 7.85 -10.99 -0.09 9.00 16 16 O -0.58 -13.49 14.53 5.54 0.08 -13.41 16 17 N -0.57 -12.72 5.09 -10.97 -0.06 -12.77 16 18 C -0.31 -8.24 10.16 -14.93 -0.15 -8.39 16 19 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 20 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 21 N -0.87 -24.31 13.96 55.50 0.77 -23.53 16 22 Si 0.88 18.43 27.74 -169.99 -4.71 13.72 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.09 6.52 56.52 0.37 -4.73 16 26 C -0.23 -3.44 5.42 -105.24 -0.57 -4.01 16 27 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.07 1.08 4.75 -51.93 -0.25 0.83 16 31 H 0.09 1.37 7.11 -51.93 -0.37 1.00 16 32 H 0.06 0.78 7.95 -51.93 -0.41 0.36 16 33 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 34 H 0.08 1.29 7.55 -51.93 -0.39 0.89 16 35 H 0.07 1.09 4.78 -51.93 -0.25 0.85 16 36 H 0.17 1.40 6.53 -52.49 -0.34 1.06 16 37 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.44 7.17 0.76 -40.82 -0.03 7.14 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.37 7.34 5.76 -40.82 -0.24 7.10 16 42 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -30.27 344.35 -9.14 -39.41 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -4.74 Total: 17.99 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.73 Total: 2.38 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 0.27 Total: -64.37 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.71 Total: 13.72 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.50 Total: -0.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.27 -9.14 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427177186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.480 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds