Wall clock time and date at job start Tue Mar 31 2020 17:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47274 * 2 1 4 4 C 1.53000 * 109.46971 * 239.99932 * 2 1 3 5 5 C 1.50700 * 109.47258 * 120.00140 * 2 1 3 6 6 C 1.31884 * 122.59374 * 0.41322 * 5 2 1 7 7 S 1.75362 * 111.38792 * 180.02562 * 6 5 2 8 8 C 1.75758 * 92.18084 * 359.95170 * 7 6 5 9 9 N 1.33924 * 131.27554 * 179.97438 * 8 7 6 10 10 C 1.31267 * 121.04057 * 180.02562 * 9 8 7 11 11 N 1.32112 * 122.18075 * 0.02562 * 10 9 8 12 12 C 1.32457 * 121.18702 * 359.97438 * 11 10 9 13 13 N 1.38317 * 120.52484 * 179.72780 * 12 11 10 14 14 C 1.46497 * 120.00684 * 6.04016 * 13 12 11 15 15 C 1.50693 * 109.47613 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99692 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00447 * 180.02562 * 15 14 13 18 18 C 1.37099 * 120.00101 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99488 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99522 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00648 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47305 * 89.99417 * 22 20 18 24 24 H 1.48497 * 109.47508 * 210.00055 * 22 20 18 25 25 H 1.48500 * 109.46620 * 330.00107 * 22 20 18 26 26 C 1.39719 * 109.61643 * 0.03761 * 8 7 6 27 27 H 1.09004 * 109.46544 * 299.99976 * 1 2 3 28 28 H 1.08996 * 109.47109 * 59.99847 * 1 2 3 29 29 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47597 * 158.77206 * 3 2 1 31 31 H 1.09003 * 109.47033 * 278.76880 * 3 2 1 32 32 H 1.08998 * 109.47749 * 38.76716 * 3 2 1 33 33 H 1.09001 * 109.47012 * 318.16510 * 4 2 1 34 34 H 1.09000 * 109.46799 * 78.16393 * 4 2 1 35 35 H 1.09000 * 109.47396 * 198.16096 * 4 2 1 36 36 H 1.08001 * 124.31248 * 0.02562 * 6 5 2 37 37 H 1.07995 * 118.90526 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99373 * 186.03868 * 13 12 11 39 39 H 1.09000 * 109.46873 * 300.00317 * 14 13 12 40 40 H 1.09002 * 109.46850 * 59.99676 * 14 13 12 41 41 H 0.96998 * 119.99601 * 359.97438 * 17 15 14 42 42 H 0.97002 * 119.99590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.2216 -1.2375 2.1272 7 16 2.1164 -1.9889 3.4350 8 6 3.6610 -1.5597 2.7144 9 7 4.9176 -1.7845 3.1193 10 6 5.9415 -1.3666 2.4122 11 7 5.7908 -0.7088 1.2764 12 6 4.5868 -0.4390 0.7947 13 7 4.4448 0.2555 -0.3930 14 6 5.6257 0.5834 -1.1957 15 6 5.2010 1.3366 -2.4299 16 8 4.0273 1.5764 -2.6201 17 7 6.1252 1.7437 -3.3223 18 6 5.7387 2.4285 -4.4454 19 1 4.6936 2.6420 -4.6148 20 6 6.6917 2.8487 -5.3652 21 7 6.3211 3.5046 -6.4420 22 14 8.4993 2.4800 -5.0719 23 1 8.8438 1.1726 -5.6860 24 1 9.3283 3.5487 -5.6850 25 1 8.7627 2.4256 -3.6115 26 6 3.4452 -0.8679 1.5199 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.0642 1.4657 0.3721 31 1 2.0134 1.8372 -1.0157 32 1 1.4058 2.0522 0.6434 33 1 1.4392 -1.6138 -1.4242 34 1 1.9623 -0.0566 -2.1096 35 1 3.0817 -1.0072 -1.1039 36 1 0.1438 -1.2099 2.0644 37 1 6.9403 -1.5672 2.7709 38 1 3.5632 0.5255 -0.6945 39 1 6.3039 1.2023 -0.6082 40 1 6.1334 -0.3360 -1.4873 41 1 7.0638 1.5523 -3.1700 42 1 6.9864 3.7983 -7.0839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427177186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:28 Heat of formation + Delta-G solvation = 39.887099 kcal Electronic energy + Delta-G solvation = -26995.181780 eV Core-core repulsion = 23295.096119 eV Total energy + Delta-G solvation = -3700.085661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42929 -40.50352 -39.57524 -37.43413 -36.03332 -35.05185 -33.84440 -33.46950 -31.23845 -28.82739 -28.39934 -28.34515 -26.45035 -25.41502 -24.39772 -23.09679 -21.49460 -20.67192 -20.00597 -19.39366 -18.60608 -17.97300 -17.31386 -16.92350 -16.84722 -16.47434 -16.04541 -16.01252 -15.60047 -15.45301 -15.26191 -15.07732 -14.53707 -14.34326 -14.17340 -14.07133 -13.78692 -13.61815 -13.17239 -13.09844 -12.88319 -12.66045 -12.62036 -12.44686 -12.17068 -12.02492 -11.98936 -11.96211 -11.68591 -11.57241 -11.56699 -10.62134 -10.45549 -10.31767 -10.25252 -9.49744 -8.77694 -8.45585 -6.07064 -0.47615 0.07737 0.18806 0.86603 1.13265 1.30372 1.33307 1.43164 1.77955 1.85933 2.20103 2.74373 2.78668 3.10785 3.28589 3.35421 3.43337 3.60979 3.73945 3.90440 3.93008 4.02578 4.20035 4.29369 4.34408 4.37248 4.50771 4.65158 4.74493 4.78455 4.89999 4.98065 4.99713 5.09685 5.16129 5.21969 5.25121 5.38410 5.46372 5.62238 5.86751 5.92322 6.42753 6.49654 6.78340 7.17878 7.28924 7.77378 8.70679 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.003423 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.053980 B = 8178.279705 C = 9544.255782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.014 4.014 3 C -0.170 4.170 4 C -0.165 4.165 5 C -0.058 4.058 6 C -0.204 4.204 7 S 0.188 5.812 8 C 0.094 3.906 9 N -0.552 5.552 10 C 0.351 3.649 11 N -0.598 5.598 12 C 0.473 3.527 13 N -0.696 5.696 14 C 0.113 3.887 15 C 0.441 3.559 16 O -0.604 6.604 17 N -0.576 5.576 18 C -0.328 4.328 19 H 0.065 0.935 20 C -0.008 4.008 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.232 1.232 26 C -0.245 4.245 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.208 0.792 37 H 0.237 0.763 38 H 0.439 0.561 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.391 0.609 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -11.447 19.554 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 C -0.227 4.227 4 C -0.222 4.222 5 C -0.070 4.070 6 C -0.338 4.338 7 S 0.448 5.552 8 C -0.154 4.154 9 N -0.275 5.275 10 C 0.059 3.941 11 N -0.326 5.326 12 C 0.220 3.780 13 N -0.342 5.342 14 C -0.014 4.014 15 C 0.228 3.772 16 O -0.490 6.490 17 N -0.216 5.216 18 C -0.457 4.457 19 H 0.083 0.917 20 C -0.208 4.208 21 N -0.566 5.566 22 Si 0.777 3.223 23 H -0.181 1.181 24 H -0.200 1.200 25 H -0.155 1.155 26 C -0.263 4.263 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.224 0.776 37 H 0.253 0.747 38 H 0.295 0.705 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.227 0.773 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.769 -12.067 20.743 24.681 hybrid contribution 0.642 1.298 -2.339 2.751 sum -5.127 -10.769 18.404 21.931 Atomic orbital electron populations 1.21970 0.90784 1.03508 1.03335 1.19368 0.98269 0.93355 0.90668 1.22393 1.01320 0.96024 1.03000 1.22362 1.01615 1.01391 0.96876 1.19397 0.89306 1.00455 0.97836 1.25346 1.05059 1.05537 0.97851 1.83919 0.89184 1.58509 1.23558 1.24086 0.99225 0.97421 0.94708 1.68120 0.97101 1.26826 1.35441 1.25371 0.99018 0.85645 0.84113 1.67968 1.22526 1.23774 1.18364 1.18561 0.88662 0.85568 0.85163 1.46291 1.12431 1.56445 1.19079 1.21022 0.88967 1.01191 0.90251 1.20471 0.86290 0.84335 0.86106 1.90519 1.18815 1.61375 1.78268 1.41892 1.08703 1.50977 1.20030 1.19017 0.95517 1.32983 0.98186 0.91696 1.26046 1.04599 0.95673 0.94476 1.69783 1.37136 1.37955 1.11694 0.85472 0.76696 0.79336 0.80803 1.18144 1.19958 1.15506 1.20068 0.94630 1.11288 1.00345 0.90351 0.91827 0.90376 0.92933 0.92112 0.90034 0.90550 0.92530 0.92876 0.77570 0.74742 0.70527 0.87439 0.87536 0.77294 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.05 71.98 0.51 -1.88 16 2 C -0.01 -0.34 0.75 -52.93 -0.04 -0.38 16 3 C -0.17 -4.81 7.43 71.98 0.53 -4.27 16 4 C -0.16 -4.68 7.60 71.98 0.55 -4.13 16 5 C -0.06 -1.39 4.71 -18.94 -0.09 -1.48 16 6 C -0.20 -3.69 9.87 66.99 0.66 -3.03 16 7 S 0.19 3.62 23.23 -56.49 -1.31 2.31 16 8 C 0.09 2.52 7.69 84.73 0.65 3.17 16 9 N -0.55 -14.70 10.47 -196.05 -2.05 -16.75 16 10 C 0.35 8.45 12.27 180.95 2.22 10.67 16 11 N -0.60 -16.93 9.67 -196.41 -1.90 -18.83 16 12 C 0.47 14.55 6.72 133.96 0.90 15.45 16 13 N -0.70 -22.71 3.00 -346.89 -1.04 -23.75 16 14 C 0.11 3.70 6.21 85.63 0.53 4.23 16 15 C 0.44 18.83 7.85 87.66 0.69 19.51 16 16 O -0.60 -29.87 14.53 -3.07 -0.04 -29.92 16 17 N -0.58 -25.84 5.09 -306.99 -1.56 -27.41 16 18 C -0.33 -18.25 10.16 84.04 0.85 -17.39 16 19 H 0.06 4.27 7.39 -2.91 -0.02 4.24 16 20 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 21 N -0.93 -53.80 13.96 21.66 0.30 -53.50 16 22 Si 0.96 37.45 27.74 68.60 1.90 39.36 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 26 C -0.24 -6.96 5.42 -20.26 -0.11 -7.07 16 27 H 0.08 1.06 7.69 -2.38 -0.02 1.05 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 30 H 0.05 1.67 4.75 -2.39 -0.01 1.66 16 31 H 0.06 2.03 7.11 -2.39 -0.02 2.01 16 32 H 0.08 1.93 7.95 -2.39 -0.02 1.91 16 33 H 0.08 1.84 8.01 -2.39 -0.02 1.82 16 34 H 0.06 1.87 7.55 -2.39 -0.02 1.85 16 35 H 0.05 1.69 4.78 -2.39 -0.01 1.68 16 36 H 0.21 2.30 6.53 -2.91 -0.02 2.28 16 37 H 0.24 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.44 14.69 0.76 -92.70 -0.07 14.62 16 39 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 42 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -70.76 344.35 3.05 -67.71 By element: Atomic # 1 Polarization: 46.91 SS G_CDS: 0.43 Total: 47.34 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 8.32 Total: 13.44 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -6.25 Total: -140.24 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.04 Total: -29.92 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.36 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.31 Total: 2.31 kcal Total: -70.76 3.05 -67.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427177186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.594 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds