Wall clock time and date at job start Tue Mar 31 2020 17:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46992 * 2 1 4 4 C 1.33633 * 122.74840 * 125.00249 * 3 2 1 5 5 S 1.76207 * 107.92507 * 179.97438 * 4 3 2 6 6 C 1.70982 * 90.28062 * 359.97438 * 5 4 3 7 7 C 1.50697 * 124.91336 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46932 * 270.02197 * 7 6 5 9 9 O 1.21293 * 120.00121 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99801 * 179.97438 * 8 7 6 11 11 C 1.39480 * 119.99819 * 179.97438 * 10 8 7 12 12 C 1.36108 * 126.21779 * 0.02562 * 11 10 8 13 13 C 1.39758 * 107.82615 * 179.97438 * 12 11 10 14 14 C 1.50701 * 125.83379 * 180.02562 * 13 12 11 15 15 N 1.30845 * 108.32397 * 0.02562 * 13 12 11 16 16 N 1.35265 * 126.21258 * 180.02562 * 11 10 8 17 17 C 1.46495 * 126.05131 * 359.72866 * 16 11 10 18 18 C 1.50704 * 109.46917 * 90.00227 * 17 16 11 19 19 H 1.07996 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99975 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99781 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00068 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46924 * 90.00390 * 22 20 18 24 24 H 1.48504 * 109.47031 * 210.00200 * 22 20 18 25 25 H 1.48501 * 109.47212 * 330.00061 * 22 20 18 26 26 N 1.29031 * 110.16651 * 0.24381 * 6 5 4 27 27 H 1.09005 * 109.47294 * 59.99997 * 1 2 3 28 28 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47179 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46748 * 239.99748 * 2 1 3 31 31 H 1.08993 * 109.46955 * 120.00164 * 2 1 3 32 32 H 1.07999 * 126.03836 * 359.96262 * 4 3 2 33 33 H 1.08999 * 109.47110 * 150.02766 * 7 6 5 34 34 H 1.08999 * 109.47138 * 30.02105 * 7 6 5 35 35 H 0.97001 * 120.00273 * 0.02562 * 10 8 7 36 36 H 1.07998 * 126.08250 * 359.97017 * 12 11 10 37 37 H 1.08997 * 109.47266 * 90.00036 * 14 13 12 38 38 H 1.09005 * 109.47037 * 209.99685 * 14 13 12 39 39 H 1.09000 * 109.47039 * 329.99915 * 14 13 12 40 40 H 1.09000 * 109.47596 * 210.00544 * 17 16 11 41 41 H 1.09004 * 109.47027 * 330.01061 * 17 16 11 42 42 H 0.96997 * 119.99556 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8811 1.8875 0.9206 5 16 3.2056 3.5795 0.5509 6 6 2.1682 3.4908 -0.8053 7 6 1.8758 4.6332 -1.7436 8 6 0.6809 5.4021 -1.2417 9 8 0.1220 5.0568 -0.2221 10 7 0.2338 6.4742 -1.9253 11 6 -0.8725 7.1856 -1.4611 12 6 -1.5923 6.9108 -0.3391 13 6 -2.6109 7.8625 -0.2404 14 6 -3.6460 7.9370 0.8524 15 7 -2.5122 8.6778 -1.2590 16 7 -1.4249 8.2739 -2.0442 17 6 -0.9634 8.9200 -3.2753 18 6 -1.6594 8.2998 -4.4594 19 1 -2.3743 7.5042 -4.3097 20 6 -1.3835 8.7480 -5.7338 21 7 -1.9913 8.2070 -6.7671 22 14 -0.1465 10.1235 -5.9927 23 1 1.2087 9.5433 -6.1712 24 1 -0.5159 10.9000 -7.2034 25 1 -0.1490 11.0207 -4.8094 26 7 1.6677 2.3058 -0.9058 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.2949 1.3267 1.7457 33 1 1.6639 4.2412 -2.7384 34 1 2.7404 5.2953 -1.7905 35 1 0.6810 6.7507 -2.7405 36 1 -1.4089 6.1012 0.3519 37 1 -3.2740 8.5634 1.6631 38 1 -4.5650 8.3667 0.4537 39 1 -3.8476 6.9349 1.2307 40 1 -1.1935 9.9847 -3.2353 41 1 0.1136 8.7845 -3.3751 42 1 -1.7975 8.5226 -7.6635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554783678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:49 Heat of formation + Delta-G solvation = 82.763298 kcal Electronic energy + Delta-G solvation = -25616.028493 eV Core-core repulsion = 21917.802083 eV Total energy + Delta-G solvation = -3698.226410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00194 -40.17512 -39.12582 -34.85479 -34.13799 -33.77607 -32.20471 -31.65720 -29.58078 -29.01684 -27.91996 -26.33373 -24.82458 -23.25912 -22.43219 -21.29553 -19.91395 -19.78488 -19.38820 -17.66841 -17.22931 -17.03410 -16.58299 -15.71403 -15.53098 -15.19484 -14.73524 -14.56037 -14.17069 -14.04348 -13.81375 -13.71716 -13.31115 -13.13791 -12.73651 -12.67033 -12.62773 -12.42908 -12.19090 -11.95311 -11.90894 -11.83829 -11.39372 -11.16273 -11.06944 -10.85631 -10.52421 -10.26031 -10.07283 -9.77863 -9.76207 -9.63759 -9.47583 -8.87886 -8.85944 -7.98556 -7.52266 -6.34703 -4.39463 0.52452 1.21183 1.58747 2.14456 2.49442 2.82507 3.01813 3.05224 3.15712 3.16928 3.52229 3.62519 3.83156 4.12673 4.44574 4.68502 4.80180 4.90884 4.91177 4.99961 5.13432 5.23874 5.28217 5.35566 5.44901 5.58035 5.70587 5.92018 5.98389 5.98898 6.01691 6.10206 6.18684 6.21078 6.28165 6.34329 6.60887 6.72738 7.18415 7.40719 7.49626 7.62358 7.72219 8.12134 8.26280 8.54433 8.71902 9.19616 10.77504 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003152 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.639313 B = 8879.754179 C = 9911.005870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.074 3.926 4 C -0.263 4.263 5 S 0.133 5.867 6 C 0.073 3.927 7 C -0.064 4.064 8 C 0.526 3.474 9 O -0.502 6.502 10 N -0.638 5.638 11 C 0.305 3.695 12 C -0.291 4.291 13 C 0.055 3.945 14 C -0.063 4.063 15 N -0.282 5.282 16 N -0.343 5.343 17 C 0.230 3.770 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.080 3.920 21 N -0.882 5.882 22 Si 0.872 3.128 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.263 1.263 26 N -0.455 5.455 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.175 0.825 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.417 0.583 36 H 0.162 0.838 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 -11.321 14.113 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.059 4.059 4 C -0.402 4.402 5 S 0.389 5.611 6 C -0.206 4.206 7 C -0.107 4.107 8 C 0.310 3.690 9 O -0.375 6.375 10 N -0.286 5.286 11 C 0.083 3.917 12 C -0.323 4.323 13 C -0.110 4.110 14 C -0.122 4.122 15 N -0.107 5.107 16 N -0.128 5.128 17 C 0.111 3.889 18 C -0.585 4.585 19 H 0.100 0.900 20 C -0.125 4.125 21 N -0.519 5.519 22 Si 0.697 3.303 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.170 5.170 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.193 0.807 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.253 0.747 36 H 0.180 0.820 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.125 -9.815 13.935 20.917 hybrid contribution 0.905 -0.647 -0.646 1.286 sum 13.029 -10.461 13.289 21.350 Atomic orbital electron populations 1.21681 0.94028 1.01564 1.03078 1.20133 0.96931 0.88800 1.02770 1.20256 0.96698 0.97463 0.91442 1.26829 1.08569 0.97705 1.07146 1.83893 1.43992 1.09063 1.24176 1.25982 0.99395 0.95807 0.99433 1.20187 0.97868 0.93031 0.99644 1.20119 0.85192 0.79582 0.84118 1.90680 1.57090 1.65949 1.23740 1.42673 1.28908 1.28606 1.28380 1.17869 0.90100 0.89695 0.94000 1.21276 1.01350 1.07431 1.02210 1.22049 0.97874 0.94994 0.96089 1.20036 0.95593 1.02355 0.94186 1.77367 1.04481 1.23707 1.05142 1.48898 1.22116 1.21010 1.20804 1.19938 0.94429 0.95177 0.79382 1.21197 1.26621 1.21890 0.88761 0.90042 1.24828 0.95903 0.96194 0.95531 1.69876 1.41516 1.41511 0.98957 0.86922 0.81668 0.82735 0.78943 1.19624 1.20356 1.18757 1.65965 1.23210 1.00636 1.27146 0.91521 0.92367 0.92733 0.90237 0.90473 0.80718 0.84967 0.86127 0.74695 0.82034 0.91306 0.91363 0.91039 0.92725 0.94735 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.08 16 2 C -0.05 -0.42 6.43 -27.88 -0.18 -0.60 16 3 C 0.07 0.85 6.08 -84.23 -0.51 0.34 16 4 C -0.26 -2.60 11.07 29.12 0.32 -2.28 16 5 S 0.13 1.36 23.18 -107.50 -2.49 -1.13 16 6 C 0.07 0.90 5.88 -13.46 -0.08 0.82 16 7 C -0.06 -0.69 6.28 -29.04 -0.18 -0.88 16 8 C 0.53 7.95 7.79 -10.99 -0.09 7.86 16 9 O -0.50 -9.08 13.16 5.55 0.07 -9.00 16 10 N -0.64 -10.55 5.42 -11.46 -0.06 -10.61 16 11 C 0.31 6.26 7.66 -153.15 -1.17 5.09 16 12 C -0.29 -5.90 9.58 -39.78 -0.38 -6.28 16 13 C 0.05 1.10 7.21 -82.44 -0.59 0.50 16 14 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 15 N -0.28 -6.46 12.56 33.65 0.42 -6.04 16 16 N -0.34 -7.80 3.60 -61.57 -0.22 -8.02 16 17 C 0.23 5.31 5.07 -5.19 -0.03 5.28 16 18 C -0.55 -14.81 9.94 -34.44 -0.34 -15.15 16 19 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 21 N -0.88 -25.51 13.96 55.43 0.77 -24.74 16 22 Si 0.87 19.24 27.47 -169.99 -4.67 14.57 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 26 N -0.46 -6.21 10.34 -8.06 -0.08 -6.30 16 27 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.51 8.03 -51.93 -0.42 0.10 16 32 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.42 6.01 7.97 -40.82 -0.33 5.69 16 36 H 0.16 3.22 5.83 -52.49 -0.31 2.92 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 1.29 7.20 -51.93 -0.37 0.91 16 41 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -34.57 372.76 -8.83 -43.40 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.60 Total: 7.10 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.59 Total: -4.86 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.83 Total: -55.70 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.57 -8.83 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554783678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.165 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds