Wall clock time and date at job start Tue Mar 31 2020 17:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46992 * 2 1 4 4 C 1.33633 * 122.74840 * 125.00249 * 3 2 1 5 5 S 1.76207 * 107.92507 * 179.97438 * 4 3 2 6 6 C 1.70982 * 90.28062 * 359.97438 * 5 4 3 7 7 C 1.50697 * 124.91336 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46932 * 270.02197 * 7 6 5 9 9 O 1.21293 * 120.00121 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99801 * 179.97438 * 8 7 6 11 11 C 1.39480 * 119.99819 * 179.97438 * 10 8 7 12 12 C 1.36108 * 126.21779 * 0.02562 * 11 10 8 13 13 C 1.39758 * 107.82615 * 179.97438 * 12 11 10 14 14 C 1.50701 * 125.83379 * 180.02562 * 13 12 11 15 15 N 1.30845 * 108.32397 * 0.02562 * 13 12 11 16 16 N 1.35265 * 126.21258 * 180.02562 * 11 10 8 17 17 C 1.46495 * 126.05131 * 359.72866 * 16 11 10 18 18 C 1.50704 * 109.46917 * 90.00227 * 17 16 11 19 19 H 1.07996 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99975 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99781 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00068 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46924 * 90.00390 * 22 20 18 24 24 H 1.48504 * 109.47031 * 210.00200 * 22 20 18 25 25 H 1.48501 * 109.47212 * 330.00061 * 22 20 18 26 26 N 1.29031 * 110.16651 * 0.24381 * 6 5 4 27 27 H 1.09005 * 109.47294 * 59.99997 * 1 2 3 28 28 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47179 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46748 * 239.99748 * 2 1 3 31 31 H 1.08993 * 109.46955 * 120.00164 * 2 1 3 32 32 H 1.07999 * 126.03836 * 359.96262 * 4 3 2 33 33 H 1.08999 * 109.47110 * 150.02766 * 7 6 5 34 34 H 1.08999 * 109.47138 * 30.02105 * 7 6 5 35 35 H 0.97001 * 120.00273 * 0.02562 * 10 8 7 36 36 H 1.07998 * 126.08250 * 359.97017 * 12 11 10 37 37 H 1.08997 * 109.47266 * 90.00036 * 14 13 12 38 38 H 1.09005 * 109.47037 * 209.99685 * 14 13 12 39 39 H 1.09000 * 109.47039 * 329.99915 * 14 13 12 40 40 H 1.09000 * 109.47596 * 210.00544 * 17 16 11 41 41 H 1.09004 * 109.47027 * 330.01061 * 17 16 11 42 42 H 0.96997 * 119.99556 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8811 1.8875 0.9206 5 16 3.2056 3.5795 0.5509 6 6 2.1682 3.4908 -0.8053 7 6 1.8758 4.6332 -1.7436 8 6 0.6809 5.4021 -1.2417 9 8 0.1220 5.0568 -0.2221 10 7 0.2338 6.4742 -1.9253 11 6 -0.8725 7.1856 -1.4611 12 6 -1.5923 6.9108 -0.3391 13 6 -2.6109 7.8625 -0.2404 14 6 -3.6460 7.9370 0.8524 15 7 -2.5122 8.6778 -1.2590 16 7 -1.4249 8.2739 -2.0442 17 6 -0.9634 8.9200 -3.2753 18 6 -1.6594 8.2998 -4.4594 19 1 -2.3743 7.5042 -4.3097 20 6 -1.3835 8.7480 -5.7338 21 7 -1.9913 8.2070 -6.7671 22 14 -0.1465 10.1235 -5.9927 23 1 1.2087 9.5433 -6.1712 24 1 -0.5159 10.9000 -7.2034 25 1 -0.1490 11.0207 -4.8094 26 7 1.6677 2.3058 -0.9058 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.2949 1.3267 1.7457 33 1 1.6639 4.2412 -2.7384 34 1 2.7404 5.2953 -1.7905 35 1 0.6810 6.7507 -2.7405 36 1 -1.4089 6.1012 0.3519 37 1 -3.2740 8.5634 1.6631 38 1 -4.5650 8.3667 0.4537 39 1 -3.8476 6.9349 1.2307 40 1 -1.1935 9.9847 -3.2353 41 1 0.1136 8.7845 -3.3751 42 1 -1.7975 8.5226 -7.6635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554783678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:48 Heat of formation + Delta-G solvation = 59.386466 kcal Electronic energy + Delta-G solvation = -25617.042188 eV Core-core repulsion = 21917.802083 eV Total energy + Delta-G solvation = -3699.240105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.49552 -41.15178 -40.35090 -36.32545 -35.57571 -34.94721 -34.00043 -32.59032 -31.12761 -30.17478 -29.17798 -28.02795 -25.68715 -24.54270 -23.95087 -22.50010 -21.30840 -20.86306 -20.63940 -19.26284 -18.66310 -18.35486 -17.91620 -16.87817 -16.77023 -16.30861 -16.20366 -15.83532 -15.56921 -15.19905 -14.88899 -14.77355 -14.63996 -14.38852 -14.18499 -14.14472 -13.79339 -13.52165 -13.41022 -13.22309 -13.09962 -12.91092 -12.72310 -12.53346 -12.15490 -12.13213 -11.86867 -11.81265 -11.78949 -11.53544 -11.04544 -10.90811 -10.61827 -10.33560 -9.65651 -9.63713 -9.10793 -8.41938 -6.55165 -0.30639 0.42646 0.72531 0.78548 1.23466 1.33956 1.39572 1.48781 1.57944 1.80701 2.00978 2.21343 2.25728 2.89582 2.99172 3.44212 3.76414 3.79422 4.08882 4.18420 4.18709 4.30646 4.39292 4.43943 4.47309 4.57743 4.64260 4.65696 4.67722 4.84132 4.86809 4.91957 5.00105 5.11939 5.17069 5.17680 5.20371 5.21543 5.41247 5.85429 5.96105 6.16239 6.31374 6.49382 6.80950 6.87543 6.97123 7.10020 8.74604 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003152 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.639313 B = 8879.754179 C = 9911.005870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C 0.047 3.953 4 C -0.256 4.256 5 S 0.162 5.838 6 C 0.044 3.956 7 C -0.056 4.056 8 C 0.526 3.474 9 O -0.532 6.532 10 N -0.636 5.636 11 C 0.304 3.696 12 C -0.307 4.307 13 C 0.060 3.940 14 C -0.062 4.062 15 N -0.328 5.328 16 N -0.365 5.365 17 C 0.238 3.762 18 C -0.555 4.555 19 H 0.020 0.980 20 C 0.024 3.976 21 N -0.935 5.935 22 Si 0.951 3.049 23 H -0.242 1.242 24 H -0.281 1.281 25 H -0.246 1.246 26 N -0.488 5.488 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.206 0.794 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.426 0.574 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.561 -11.127 15.544 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.394 4.394 5 S 0.417 5.583 6 C -0.234 4.234 7 C -0.099 4.099 8 C 0.313 3.687 9 O -0.407 6.407 10 N -0.284 5.284 11 C 0.082 3.918 12 C -0.339 4.339 13 C -0.105 4.105 14 C -0.120 4.120 15 N -0.153 5.153 16 N -0.150 5.150 17 C 0.119 3.881 18 C -0.593 4.593 19 H 0.038 0.962 20 C -0.176 4.176 21 N -0.573 5.573 22 Si 0.772 3.228 23 H -0.165 1.165 24 H -0.207 1.207 25 H -0.170 1.170 26 N -0.203 5.203 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.223 0.777 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.264 0.736 36 H 0.182 0.818 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.029 -9.642 15.377 23.565 hybrid contribution -0.074 -0.857 -0.990 1.312 sum 14.955 -10.500 14.386 23.257 Atomic orbital electron populations 1.21640 0.95142 1.02231 1.01021 1.20223 0.95872 0.87977 1.04350 1.20661 0.97720 0.98314 0.91841 1.27262 1.07364 0.97706 1.07116 1.83723 1.42668 1.09171 1.22716 1.26200 1.00551 0.95879 1.00769 1.20301 0.97118 0.92907 0.99555 1.20957 0.85671 0.78723 0.83352 1.90653 1.58277 1.66517 1.25253 1.42850 1.27936 1.28726 1.28919 1.18243 0.90756 0.89044 0.93752 1.21454 1.01948 1.07844 1.02631 1.22865 0.98073 0.93587 0.95973 1.20230 0.94364 1.04147 0.93265 1.77304 1.05676 1.25714 1.06571 1.48828 1.22951 1.22178 1.21082 1.19773 0.95728 0.94508 0.78136 1.21226 1.26098 1.20894 0.91126 0.96162 1.25861 0.98137 0.99059 0.94582 1.70046 1.43767 1.43699 0.99782 0.85679 0.79434 0.78679 0.79041 1.16516 1.20692 1.16988 1.65979 1.24136 1.01621 1.28573 0.94406 0.90323 0.93852 0.89804 0.87667 0.77699 0.83930 0.81984 0.73580 0.81787 0.88806 0.90948 0.89183 0.93000 0.91140 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.81 71.98 0.71 -2.08 16 2 C -0.04 -0.74 6.43 29.85 0.19 -0.55 16 3 C 0.05 1.02 6.08 41.52 0.25 1.27 16 4 C -0.26 -4.46 11.07 66.77 0.74 -3.72 16 5 S 0.16 2.97 23.18 -56.49 -1.31 1.66 16 6 C 0.04 1.03 5.88 88.52 0.52 1.55 16 7 C -0.06 -1.13 6.28 29.10 0.18 -0.95 16 8 C 0.53 15.58 7.79 87.66 0.68 16.27 16 9 O -0.53 -19.25 13.16 -3.07 -0.04 -19.30 16 10 N -0.64 -20.72 5.42 -308.56 -1.67 -22.39 16 11 C 0.30 12.60 7.66 131.31 1.01 13.61 16 12 C -0.31 -12.57 9.58 22.14 0.21 -12.35 16 13 C 0.06 2.42 7.21 43.07 0.31 2.73 16 14 C -0.06 -1.75 10.44 71.24 0.74 -1.01 16 15 N -0.33 -15.30 12.56 -47.45 -0.60 -15.90 16 16 N -0.37 -16.84 3.60 -348.71 -1.26 -18.09 16 17 C 0.24 10.95 5.07 85.64 0.43 11.39 16 18 C -0.56 -31.06 9.94 25.60 0.25 -30.81 16 19 H 0.02 1.34 8.06 -2.91 -0.02 1.31 16 20 C 0.02 1.30 5.47 84.65 0.46 1.76 16 21 N -0.94 -55.67 13.96 21.45 0.30 -55.38 16 22 Si 0.95 38.83 27.47 68.60 1.88 40.72 16 23 H -0.24 -8.74 7.11 99.48 0.71 -8.04 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.25 -9.35 6.54 99.48 0.65 -8.70 16 26 N -0.49 -13.08 10.34 -179.40 -1.85 -14.94 16 27 H 0.04 0.94 8.07 -2.38 -0.02 0.92 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.10 1.12 8.03 -2.39 -0.02 1.10 16 32 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.43 11.85 7.97 -92.71 -0.74 11.11 16 36 H 0.16 6.60 5.83 -2.91 -0.02 6.59 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 2.40 7.20 -2.39 -0.02 2.39 16 41 H 0.07 2.71 6.93 -2.38 -0.02 2.70 16 42 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -80.06 372.76 2.42 -77.64 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.26 Total: 28.86 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 6.70 Total: -2.89 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -5.08 Total: -126.70 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.04 Total: -19.30 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.88 Total: 40.72 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.66 kcal Total: -80.06 2.42 -77.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554783678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.029 kcal (2) G-P(sol) polarization free energy of solvation -80.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds