Wall clock time and date at job start Tue Mar 31 2020 17:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46841 * 2 1 4 4 N 1.46503 * 109.47364 * 119.99981 * 2 1 3 5 5 C 1.46496 * 120.00087 * 304.45126 * 4 2 1 6 6 C 1.50702 * 109.46705 * 263.60464 * 5 4 2 7 7 H 1.08002 * 120.00531 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99652 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99987 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00220 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47075 * 90.00054 * 10 8 6 12 12 H 1.48500 * 109.46971 * 210.00043 * 10 8 6 13 13 H 1.48500 * 109.46940 * 330.00121 * 10 8 6 14 14 C 1.34776 * 119.99660 * 124.44563 * 4 2 1 15 15 O 1.21358 * 120.00173 * 354.61858 * 14 4 2 16 16 C 1.49331 * 119.99720 * 174.61317 * 14 4 2 17 17 O 1.21396 * 120.00088 * 0.62284 * 16 14 4 18 18 N 1.34777 * 120.00127 * 180.61468 * 16 14 4 19 19 C 1.39859 * 119.99989 * 184.87044 * 18 16 14 20 20 C 1.38917 * 120.00727 * 144.61583 * 19 18 16 21 21 C 1.38136 * 120.06350 * 179.72939 * 20 19 18 22 22 C 1.38585 * 120.12599 * 0.49880 * 21 20 19 23 23 C 1.39308 * 119.94977 * 359.49817 * 22 21 20 24 24 C 1.38463 * 119.90427 * 0.25971 * 23 22 21 25 25 O 1.36514 * 108.63971 * 180.25495 * 23 22 21 26 26 C 1.43983 * 105.49345 * 342.69651 * 25 23 22 27 27 O 1.36580 * 131.44208 * 179.81613 * 22 21 20 28 28 H 1.09001 * 109.47181 * 299.99768 * 1 2 3 29 29 H 1.08994 * 109.47733 * 60.00064 * 1 2 3 30 30 H 1.09010 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47181 * 240.00232 * 2 1 3 32 32 H 1.09004 * 109.46440 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47121 * 299.99695 * 3 2 1 34 34 H 1.08991 * 109.47471 * 60.00506 * 3 2 1 35 35 H 1.09003 * 109.47009 * 23.59611 * 5 4 2 36 36 H 1.08996 * 109.47413 * 143.60216 * 5 4 2 37 37 H 0.97001 * 120.00554 * 180.02562 * 9 8 6 38 38 H 0.96994 * 120.00163 * 4.86288 * 18 16 14 39 39 H 1.08003 * 119.96705 * 359.97438 * 20 19 18 40 40 H 1.08005 * 119.93967 * 180.33783 * 21 20 19 41 41 H 1.08001 * 120.01701 * 180.02562 * 24 23 22 42 42 H 1.09000 * 110.56969 * 268.59218 * 26 25 23 43 43 H 1.08997 * 110.56549 * 145.72268 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5859 -0.2495 2.5245 6 6 2.6233 0.6739 3.1095 7 1 3.5157 0.9084 2.5482 8 6 2.4336 1.2185 4.3619 9 7 3.3392 2.0240 4.8727 10 14 0.8905 0.8124 5.3332 11 1 1.1329 -0.3926 6.1665 12 1 0.5417 1.9589 6.2103 13 1 -0.2297 0.5483 4.3949 14 6 2.8654 -1.7318 1.0744 15 8 3.1470 -2.1595 -0.0258 16 6 3.4575 -2.3590 2.2934 17 8 3.1671 -1.9384 3.3945 18 7 4.3142 -3.3923 2.1712 19 6 4.7896 -4.0454 3.3130 20 6 5.0157 -5.4158 3.2860 21 6 5.4904 -6.0611 4.4113 22 6 5.7327 -5.3457 5.5732 23 6 5.5070 -3.9713 5.6035 24 6 5.0359 -3.3240 4.4738 25 8 5.8235 -3.5045 6.8467 26 6 5.8546 -4.6659 7.6972 27 8 6.1906 -5.7393 6.7983 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6358 0.2781 2.4407 36 1 1.4639 -1.1167 3.1735 37 1 3.2060 2.4069 5.7539 38 1 4.6011 -3.6830 1.2915 39 1 4.8238 -5.9765 2.3830 40 1 5.6707 -7.1257 4.3864 41 1 4.8607 -2.2585 4.4952 42 1 4.8773 -4.8362 8.1488 43 1 6.6193 -4.5569 8.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562482619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:36 Heat of formation + Delta-G solvation = -74.643376 kcal Electronic energy + Delta-G solvation = -29557.754935 eV Core-core repulsion = 25377.657238 eV Total energy + Delta-G solvation = -4180.097697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09158 -40.57309 -38.88658 -37.25911 -36.27817 -36.19340 -34.14271 -32.74609 -31.44879 -30.45217 -29.16665 -27.89953 -26.80175 -25.92966 -24.73169 -23.09864 -22.62142 -22.39362 -20.56762 -19.13582 -18.30797 -17.82266 -17.41328 -17.01001 -16.74971 -16.68757 -16.26483 -15.37477 -15.27362 -14.73758 -14.40561 -14.28575 -13.91383 -13.81890 -13.76503 -13.42011 -13.33662 -12.94753 -12.84275 -12.79989 -12.52186 -12.46463 -12.06585 -11.84567 -11.72484 -11.42065 -11.19635 -11.06184 -10.93797 -10.70193 -10.48444 -10.31511 -10.10861 -9.76171 -9.48095 -8.81842 -8.60876 -8.46502 -7.97118 -7.70407 -6.06189 -4.02598 1.05844 1.28104 2.00443 2.58542 2.93791 3.30186 3.34754 3.38930 3.46454 3.54885 3.82963 3.97533 4.42190 4.54845 4.66978 4.81878 4.87995 5.03488 5.08581 5.26262 5.27649 5.31535 5.48571 5.58620 5.63665 5.73033 5.94832 6.01316 6.08368 6.18096 6.18919 6.22098 6.27039 6.39131 6.52212 6.52669 6.68244 6.88605 6.93579 7.10024 7.20508 7.40964 7.57359 7.86922 8.17214 8.44706 8.57038 8.94584 9.54429 11.06911 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004372 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.348283 B = 6402.444926 C = 8137.746267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.549 5.549 5 C 0.196 3.804 6 C -0.509 4.509 7 H 0.073 0.927 8 C 0.080 3.920 9 N -0.896 5.896 10 Si 0.870 3.130 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.513 3.487 15 O -0.557 6.557 16 C 0.492 3.508 17 O -0.435 6.435 18 N -0.657 5.657 19 C 0.169 3.831 20 C -0.138 4.138 21 C -0.083 4.083 22 C 0.007 3.993 23 C 0.056 3.944 24 C -0.103 4.103 25 O -0.303 6.303 26 C 0.213 3.787 27 O -0.313 6.313 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.263 0.737 38 H 0.420 0.580 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.162 0.838 42 H 0.082 0.918 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 -13.457 -2.654 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.213 4.213 4 N -0.279 5.279 5 C 0.076 3.924 6 C -0.548 4.548 7 H 0.091 0.909 8 C -0.122 4.122 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.193 1.193 14 C 0.295 3.705 15 O -0.438 6.438 16 C 0.274 3.726 17 O -0.303 6.303 18 N -0.306 5.306 19 C 0.073 3.927 20 C -0.159 4.159 21 C -0.102 4.102 22 C -0.038 4.038 23 C 0.011 3.989 24 C -0.124 4.124 25 O -0.219 6.219 26 C 0.101 3.899 27 O -0.229 6.229 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.258 0.742 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.100 0.900 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.732 -13.117 -2.103 13.305 hybrid contribution -0.529 -0.141 0.680 0.873 sum 0.204 -13.258 -1.423 13.336 Atomic orbital electron populations 1.22147 0.95113 1.01981 1.02586 1.21083 0.93953 0.93850 0.88127 1.22092 1.01777 0.95058 1.02369 1.48021 1.41906 1.28306 1.09690 1.20308 0.96527 0.97265 0.78289 1.21057 1.05786 1.25960 1.01971 0.90857 1.24713 0.96084 0.94522 0.96877 1.69879 1.34416 1.31828 1.17347 0.86948 0.84097 0.78310 0.80860 1.19899 1.21403 1.19278 1.19652 0.80769 0.81808 0.88283 1.90656 1.62183 1.63746 1.27198 1.20424 0.80598 0.80685 0.90939 1.90942 1.55888 1.56676 1.26767 1.43140 1.45677 1.33264 1.08558 1.17192 0.97691 0.90598 0.87191 1.20644 1.04435 0.91925 0.98910 1.19706 1.01434 0.99794 0.89240 1.19790 1.03099 0.92347 0.88549 1.19530 1.00656 0.90982 0.87778 1.20317 0.99640 1.02899 0.89558 1.87431 1.86005 1.31466 1.16983 1.25600 1.02388 0.71874 0.90050 1.87323 1.76538 1.42539 1.16535 0.91529 0.91657 0.92713 0.88946 0.92469 0.92700 0.90339 0.94900 0.92788 0.92690 0.74212 0.84097 0.84509 0.82054 0.90036 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.10 37.15 0.34 -1.96 16 2 C 0.13 2.25 3.25 -67.93 -0.22 2.03 16 3 C -0.16 -2.61 8.91 37.16 0.33 -2.28 16 4 N -0.55 -10.97 2.37 -168.02 -0.40 -11.37 16 5 C 0.20 4.43 3.18 -5.19 -0.02 4.41 16 6 C -0.51 -13.51 7.37 -34.44 -0.25 -13.77 16 7 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 8 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 9 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 10 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 14 C 0.51 10.10 7.67 -11.64 -0.09 10.01 16 15 O -0.56 -10.85 15.82 5.49 0.09 -10.77 16 16 C 0.49 9.49 7.57 -11.64 -0.09 9.40 16 17 O -0.44 -9.79 9.56 5.46 0.05 -9.73 16 18 N -0.66 -10.14 5.32 -10.28 -0.05 -10.20 16 19 C 0.17 2.56 6.29 -83.71 -0.53 2.03 16 20 C -0.14 -1.63 9.96 -39.37 -0.39 -2.03 16 21 C -0.08 -0.98 10.05 -39.49 -0.40 -1.38 16 22 C 0.01 0.10 7.15 -39.06 -0.28 -0.18 16 23 C 0.06 0.93 7.14 -39.10 -0.28 0.65 16 24 C -0.10 -1.85 8.71 -39.26 -0.34 -2.19 16 25 O -0.30 -4.98 11.40 -45.73 -0.52 -5.50 16 26 C 0.21 2.49 8.89 101.05 0.90 3.39 16 27 O -0.31 -4.21 11.41 -45.95 -0.52 -4.73 16 28 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.09 1.53 6.91 -51.93 -0.36 1.18 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.49 7.27 -51.93 -0.38 1.11 16 35 H 0.03 0.73 5.27 -51.93 -0.27 0.45 16 36 H 0.05 1.28 5.26 -51.93 -0.27 1.01 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.42 5.40 8.30 -40.82 -0.34 5.06 16 39 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.16 3.42 6.23 -52.49 -0.33 3.10 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -32.61 355.88 -6.57 -39.18 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.26 Total: 7.01 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -1.41 Total: 10.29 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.32 Total: -47.60 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.91 Total: -30.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.61 -6.57 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562482619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.465 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds