Wall clock time and date at job start Tue Mar 31 2020 17:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47199 * 2 1 4 4 N 1.46509 * 109.47044 * 119.99733 * 2 1 3 5 5 C 1.46495 * 119.99932 * 304.44966 * 4 2 1 6 6 C 1.50700 * 109.47195 * 263.60685 * 5 4 2 7 7 H 1.08003 * 119.99880 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00151 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99540 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47061 * 60.00349 * 10 8 6 12 12 H 1.48498 * 109.46784 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47268 * 299.99729 * 10 8 6 14 14 C 1.34780 * 119.99852 * 124.44901 * 4 2 1 15 15 O 1.21357 * 119.99853 * 354.61744 * 14 4 2 16 16 C 1.49354 * 119.99759 * 174.61627 * 14 4 2 17 17 O 1.21372 * 119.99927 * 0.61882 * 16 14 4 18 18 N 1.34774 * 119.99956 * 180.61250 * 16 14 4 19 19 C 1.39757 * 120.00033 * 184.87072 * 18 16 14 20 20 C 1.39057 * 120.00351 * 144.59654 * 19 18 16 21 21 C 1.38197 * 120.22739 * 180.02562 * 20 19 18 22 22 C 1.38019 * 120.23721 * 359.95545 * 21 20 19 23 23 C 1.39645 * 119.99845 * 0.04298 * 22 21 20 24 24 C 1.47745 * 120.10953 * 179.97438 * 23 22 21 25 25 O 1.21472 * 119.99600 * 179.97438 * 24 23 22 26 26 O 1.34709 * 120.00246 * 359.97438 * 24 23 22 27 27 C 1.38641 * 119.99986 * 324.61643 * 19 18 16 28 28 H 1.08999 * 109.47509 * 299.99897 * 1 2 3 29 29 H 1.08997 * 109.46986 * 60.00441 * 1 2 3 30 30 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47776 * 239.99367 * 2 1 3 32 32 H 1.09000 * 109.46710 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46791 * 299.99678 * 3 2 1 34 34 H 1.08999 * 109.46806 * 59.99672 * 3 2 1 35 35 H 1.09003 * 109.47455 * 23.60584 * 5 4 2 36 36 H 1.09004 * 109.47267 * 143.60701 * 5 4 2 37 37 H 0.96998 * 120.00161 * 180.02562 * 9 8 6 38 38 H 0.97003 * 119.99547 * 4.87228 * 18 16 14 39 39 H 1.08001 * 119.88069 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.88141 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.00448 * 180.02562 * 22 21 20 42 42 H 0.96698 * 116.99654 * 179.97438 * 26 24 23 43 43 H 1.07994 * 120.11683 * 359.70301 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5858 -0.2494 2.5246 6 6 2.6231 0.6740 3.1096 7 1 3.5155 0.9085 2.5483 8 6 2.4334 1.2188 4.3620 9 7 1.3470 0.9330 5.0457 10 14 3.7196 2.3629 5.0874 11 1 3.8858 3.5446 4.2036 12 1 3.2811 2.8102 6.4338 13 1 5.0139 1.6439 5.2013 14 6 2.8654 -1.7318 1.0747 15 8 3.1471 -2.1596 -0.0255 16 6 3.4575 -2.3591 2.2940 17 8 3.1670 -1.9385 3.3948 18 7 4.3142 -3.3923 2.1718 19 6 4.7890 -4.0450 3.3128 20 6 5.0149 -5.4168 3.2858 21 6 5.4839 -6.0670 4.4115 22 6 5.7322 -5.3592 5.5701 23 6 5.5088 -3.9813 5.6079 24 6 5.7732 -3.2213 6.8470 25 8 5.5786 -2.0227 6.8775 26 8 6.2302 -3.8576 7.9429 27 6 5.0345 -3.3248 4.4717 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6356 0.2782 2.4408 36 1 1.4639 -1.1166 3.1737 37 1 1.2133 1.3165 5.9265 38 1 4.6012 -3.6829 1.2920 39 1 4.8232 -5.9760 2.3819 40 1 5.6570 -7.1327 4.3844 41 1 6.0991 -5.8710 6.4475 42 1 6.3888 -3.3181 8.7296 43 1 4.8640 -2.2586 4.4935 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566227703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:42 Heat of formation + Delta-G solvation = -112.884569 kcal Electronic energy + Delta-G solvation = -29489.329109 eV Core-core repulsion = 25307.573149 eV Total energy + Delta-G solvation = -4181.755960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76956 -40.06877 -38.98165 -37.63658 -36.17670 -35.98438 -34.51424 -32.76429 -31.34304 -31.18559 -29.78824 -27.19366 -26.73061 -24.92709 -24.78891 -22.94197 -22.43314 -21.22232 -20.41553 -18.87496 -18.16316 -17.61726 -17.00279 -16.56194 -16.50138 -16.03201 -15.55023 -15.51071 -15.24991 -14.93703 -14.44154 -14.22730 -13.91165 -13.62564 -13.44816 -13.26928 -13.13440 -12.76009 -12.36366 -12.26610 -11.98895 -11.83448 -11.77946 -11.56883 -11.48526 -11.31132 -11.00739 -10.85383 -10.72145 -10.55752 -10.51254 -10.25888 -10.15195 -9.90783 -9.57556 -9.10140 -8.67810 -8.25438 -8.13445 -7.83565 -5.97180 -3.98380 0.68569 1.28218 2.08609 2.61476 2.78709 3.07597 3.38997 3.44331 3.49809 3.70847 3.93322 4.05413 4.52675 4.78097 4.88718 4.96989 5.11939 5.18757 5.38912 5.40375 5.41608 5.58412 5.59009 5.73849 5.84019 6.03610 6.08701 6.22804 6.25695 6.27428 6.35482 6.35937 6.45315 6.53544 6.62814 6.74159 6.93078 6.95881 7.31298 7.42825 7.52793 7.90916 7.97902 8.10437 8.23203 8.32908 8.64834 9.00202 9.64310 11.11733 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004940 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.853297 B = 5666.574930 C = 7840.710319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.552 5.552 5 C 0.228 3.772 6 C -0.511 4.511 7 H 0.053 0.947 8 C 0.073 3.927 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.509 3.491 15 O -0.564 6.564 16 C 0.485 3.515 17 O -0.423 6.423 18 N -0.664 5.664 19 C 0.147 3.853 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.084 4.084 23 C -0.108 4.108 24 C 0.520 3.480 25 O -0.493 6.493 26 O -0.517 6.517 27 C -0.058 4.058 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.418 0.582 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.412 0.588 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -12.327 -2.745 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.282 5.282 5 C 0.109 3.891 6 C -0.550 4.550 7 H 0.071 0.929 8 C -0.130 4.130 9 N -0.528 5.528 10 Si 0.716 3.284 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.291 3.709 15 O -0.446 6.446 16 C 0.267 3.733 17 O -0.289 6.289 18 N -0.313 5.313 19 C 0.052 3.948 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.109 4.109 24 C 0.363 3.637 25 O -0.381 6.381 26 O -0.329 6.329 27 C -0.078 4.078 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.255 0.745 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.271 0.729 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.745 -11.973 -2.682 13.548 hybrid contribution 0.945 0.945 0.736 1.526 sum 6.690 -11.028 -1.946 13.044 Atomic orbital electron populations 1.22129 0.95017 1.01973 1.02588 1.21044 0.94102 0.93598 0.88314 1.22091 1.01387 0.95424 1.02366 1.48390 1.41363 1.27964 1.10514 1.19935 0.95949 0.97352 0.75854 1.21097 1.05278 1.27040 1.01580 0.92911 1.24749 0.95284 0.96486 0.96434 1.69883 1.26125 1.44146 1.12650 0.86710 0.82622 0.80846 0.78209 1.20561 1.21340 1.19953 1.19671 0.81055 0.82004 0.88151 1.90638 1.62725 1.64000 1.27247 1.20523 0.80721 0.80859 0.91213 1.91027 1.55026 1.56345 1.26526 1.43222 1.45985 1.33573 1.08519 1.17543 0.98313 0.90996 0.87935 1.21207 1.00429 0.91966 0.99720 1.20870 1.00389 1.00067 0.92219 1.21378 0.97781 0.92553 0.98624 1.18862 1.06658 0.93774 0.91646 1.20897 0.73677 0.85663 0.83441 1.91007 1.47415 1.15696 1.83935 1.84518 1.78765 1.46329 1.23302 1.21615 0.93176 1.02655 0.90346 0.91179 0.91955 0.92800 0.89296 0.92794 0.92781 0.90312 0.94554 0.91976 0.92862 0.74474 0.84937 0.84873 0.84582 0.72929 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.10 37.16 0.34 -2.13 16 2 C 0.13 2.36 3.25 -67.92 -0.22 2.14 16 3 C -0.15 -2.66 8.91 37.16 0.33 -2.33 16 4 N -0.55 -11.60 2.38 -168.00 -0.40 -12.00 16 5 C 0.23 5.58 4.11 -5.20 -0.02 5.56 16 6 C -0.51 -13.78 6.82 -34.44 -0.23 -14.01 16 7 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 8 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 9 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 10 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.51 10.48 7.67 -11.63 -0.09 10.39 16 15 O -0.56 -11.44 15.82 5.49 0.09 -11.35 16 16 C 0.49 9.78 7.57 -11.63 -0.09 9.69 16 17 O -0.42 -10.06 9.57 5.48 0.05 -10.01 16 18 N -0.66 -10.55 5.32 -10.33 -0.05 -10.60 16 19 C 0.15 2.23 6.29 -83.79 -0.53 1.70 16 20 C -0.11 -1.27 9.96 -39.29 -0.39 -1.66 16 21 C -0.12 -1.17 10.02 -39.68 -0.40 -1.56 16 22 C -0.08 -0.97 9.61 -39.14 -0.38 -1.35 16 23 C -0.11 -1.65 5.87 -105.00 -0.62 -2.26 16 24 C 0.52 8.31 8.27 34.62 0.29 8.59 16 25 O -0.49 -10.18 17.13 -19.24 -0.33 -10.51 16 26 O -0.52 -5.84 12.68 -40.52 -0.51 -6.35 16 27 C -0.06 -1.02 8.23 -38.95 -0.32 -1.34 16 28 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.53 7.27 -51.93 -0.38 1.15 16 35 H 0.04 0.92 6.21 -51.93 -0.32 0.59 16 36 H 0.06 1.68 5.84 -51.93 -0.30 1.38 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.42 5.56 8.30 -40.82 -0.34 5.22 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.14 1.27 7.60 -52.49 -0.40 0.87 16 42 H 0.41 2.89 9.11 45.56 0.42 3.31 16 43 H 0.16 3.53 5.84 -52.49 -0.31 3.23 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -34.39 366.57 -6.75 -41.14 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.41 Total: 8.64 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -2.43 Total: 13.38 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.28 Total: -47.99 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.70 Total: -38.23 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.39 -6.75 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566227703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.743 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds