Wall clock time and date at job start Tue Mar 31 2020 17:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47199 * 2 1 4 4 N 1.46509 * 109.47044 * 119.99733 * 2 1 3 5 5 C 1.46495 * 119.99932 * 304.44966 * 4 2 1 6 6 C 1.50700 * 109.47195 * 263.60685 * 5 4 2 7 7 H 1.08003 * 119.99880 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00151 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99540 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47061 * 60.00349 * 10 8 6 12 12 H 1.48498 * 109.46784 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47268 * 299.99729 * 10 8 6 14 14 C 1.34780 * 119.99852 * 124.44901 * 4 2 1 15 15 O 1.21357 * 119.99853 * 354.61744 * 14 4 2 16 16 C 1.49354 * 119.99759 * 174.61627 * 14 4 2 17 17 O 1.21372 * 119.99927 * 0.61882 * 16 14 4 18 18 N 1.34774 * 119.99956 * 180.61250 * 16 14 4 19 19 C 1.39757 * 120.00033 * 184.87072 * 18 16 14 20 20 C 1.39057 * 120.00351 * 144.59654 * 19 18 16 21 21 C 1.38197 * 120.22739 * 180.02562 * 20 19 18 22 22 C 1.38019 * 120.23721 * 359.95545 * 21 20 19 23 23 C 1.39645 * 119.99845 * 0.04298 * 22 21 20 24 24 C 1.47745 * 120.10953 * 179.97438 * 23 22 21 25 25 O 1.21472 * 119.99600 * 179.97438 * 24 23 22 26 26 O 1.34709 * 120.00246 * 359.97438 * 24 23 22 27 27 C 1.38641 * 119.99986 * 324.61643 * 19 18 16 28 28 H 1.08999 * 109.47509 * 299.99897 * 1 2 3 29 29 H 1.08997 * 109.46986 * 60.00441 * 1 2 3 30 30 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47776 * 239.99367 * 2 1 3 32 32 H 1.09000 * 109.46710 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46791 * 299.99678 * 3 2 1 34 34 H 1.08999 * 109.46806 * 59.99672 * 3 2 1 35 35 H 1.09003 * 109.47455 * 23.60584 * 5 4 2 36 36 H 1.09004 * 109.47267 * 143.60701 * 5 4 2 37 37 H 0.96998 * 120.00161 * 180.02562 * 9 8 6 38 38 H 0.97003 * 119.99547 * 4.87228 * 18 16 14 39 39 H 1.08001 * 119.88069 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.88141 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.00448 * 180.02562 * 22 21 20 42 42 H 0.96698 * 116.99654 * 179.97438 * 26 24 23 43 43 H 1.07994 * 120.11683 * 359.70301 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.5858 -0.2494 2.5246 6 6 2.6231 0.6740 3.1096 7 1 3.5155 0.9085 2.5483 8 6 2.4334 1.2188 4.3620 9 7 1.3470 0.9330 5.0457 10 14 3.7196 2.3629 5.0874 11 1 3.8858 3.5446 4.2036 12 1 3.2811 2.8102 6.4338 13 1 5.0139 1.6439 5.2013 14 6 2.8654 -1.7318 1.0747 15 8 3.1471 -2.1596 -0.0255 16 6 3.4575 -2.3591 2.2940 17 8 3.1670 -1.9385 3.3948 18 7 4.3142 -3.3923 2.1718 19 6 4.7890 -4.0450 3.3128 20 6 5.0149 -5.4168 3.2858 21 6 5.4839 -6.0670 4.4115 22 6 5.7322 -5.3592 5.5701 23 6 5.5088 -3.9813 5.6079 24 6 5.7732 -3.2213 6.8470 25 8 5.5786 -2.0227 6.8775 26 8 6.2302 -3.8576 7.9429 27 6 5.0345 -3.3248 4.4717 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6356 0.2782 2.4408 36 1 1.4639 -1.1166 3.1737 37 1 1.2133 1.3165 5.9265 38 1 4.6012 -3.6829 1.2920 39 1 4.8232 -5.9760 2.3819 40 1 5.6570 -7.1327 4.3844 41 1 6.0991 -5.8710 6.4475 42 1 6.3888 -3.3181 8.7296 43 1 4.8640 -2.2586 4.4935 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566227703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:41 Heat of formation + Delta-G solvation = -137.850283 kcal Electronic energy + Delta-G solvation = -29490.411704 eV Core-core repulsion = 25307.573149 eV Total energy + Delta-G solvation = -4182.838554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18117 -41.38940 -40.34488 -39.01435 -37.80001 -37.16527 -35.86045 -34.81668 -32.92289 -32.32525 -30.97016 -29.21111 -28.07191 -26.40642 -25.92405 -24.97012 -23.63633 -22.35214 -21.78680 -20.37847 -19.42239 -18.96621 -18.62053 -18.40066 -18.07197 -17.16613 -16.87551 -16.74322 -16.70988 -16.64638 -16.13312 -15.72365 -15.28817 -14.97069 -14.72202 -14.65976 -14.46075 -14.30654 -13.95858 -13.75589 -13.56138 -13.35307 -12.99704 -12.89171 -12.82890 -12.81249 -12.68507 -12.53155 -12.39953 -12.29310 -11.94693 -11.81797 -11.69793 -11.52628 -11.46534 -10.64002 -10.22095 -10.03828 -9.64477 -9.29210 -8.15997 -6.20182 -0.40211 0.09887 0.60364 1.29141 1.34971 1.37184 1.40509 1.48982 1.96188 2.21270 2.37599 2.60675 2.75507 3.20028 3.39028 3.85444 3.97519 4.00129 4.07477 4.18747 4.21700 4.37108 4.38380 4.51607 4.61246 4.81260 4.86588 4.89815 4.97100 5.10789 5.17546 5.17739 5.26483 5.28352 5.35774 5.44228 5.46782 5.50880 5.58829 5.76224 5.86589 6.08792 6.14306 6.32617 6.78150 6.83594 6.89768 7.08199 7.44283 8.92159 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004940 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.853297 B = 5666.574930 C = 7840.710319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.124 3.876 3 C -0.148 4.148 4 N -0.559 5.559 5 C 0.251 3.749 6 C -0.500 4.500 7 H 0.042 0.958 8 C 0.027 3.973 9 N -0.919 5.919 10 Si 0.935 3.065 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.293 1.293 14 C 0.506 3.494 15 O -0.558 6.558 16 C 0.482 3.518 17 O -0.470 6.470 18 N -0.644 5.644 19 C 0.121 3.879 20 C -0.089 4.089 21 C -0.099 4.099 22 C -0.064 4.064 23 C -0.133 4.133 24 C 0.525 3.475 25 O -0.558 6.558 26 O -0.494 6.494 27 C -0.091 4.091 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.260 0.740 38 H 0.431 0.569 39 H 0.172 0.828 40 H 0.187 0.813 41 H 0.168 0.832 42 H 0.432 0.568 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -15.409 -4.115 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 C -0.206 4.206 4 N -0.289 5.289 5 C 0.130 3.870 6 C -0.539 4.539 7 H 0.060 0.940 8 C -0.173 4.173 9 N -0.560 5.560 10 Si 0.762 3.238 11 H -0.185 1.185 12 H -0.209 1.209 13 H -0.220 1.220 14 C 0.288 3.712 15 O -0.440 6.440 16 C 0.263 3.737 17 O -0.340 6.340 18 N -0.294 5.294 19 C 0.027 3.973 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.135 4.135 24 C 0.370 3.630 25 O -0.450 6.450 26 O -0.308 6.308 27 C -0.111 4.111 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.271 0.729 39 H 0.189 0.811 40 H 0.204 0.796 41 H 0.185 0.815 42 H 0.293 0.707 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.772 -15.099 -4.081 17.044 hybrid contribution 0.754 1.688 1.145 2.174 sum 7.526 -13.411 -2.936 15.656 Atomic orbital electron populations 1.22076 0.93118 1.02346 1.03354 1.21369 0.95698 0.93590 0.87107 1.22034 1.00411 0.95202 1.02916 1.48378 1.41802 1.28503 1.10244 1.19369 0.94858 0.95522 0.77213 1.21237 1.04951 1.26475 1.01256 0.93999 1.25357 0.96723 0.98084 0.97105 1.69970 1.27556 1.45563 1.12875 0.85969 0.79801 0.79884 0.78131 1.18455 1.20927 1.21955 1.19832 0.80891 0.81960 0.88475 1.90619 1.62562 1.63860 1.26983 1.20595 0.81123 0.81545 0.90387 1.91035 1.57046 1.58128 1.27820 1.43002 1.44471 1.32211 1.09716 1.17771 1.00083 0.92653 0.86787 1.21661 0.97700 0.89805 1.01763 1.21486 0.97515 1.02245 0.90422 1.21785 0.95494 0.90448 1.00494 1.18963 1.08289 0.95612 0.90610 1.21193 0.72326 0.84899 0.84533 1.90981 1.50521 1.18429 1.85052 1.84458 1.77484 1.45742 1.23072 1.21284 0.96336 1.00547 0.92978 0.93124 0.88361 0.92641 0.88278 0.94216 0.88873 0.93011 0.95259 0.94632 0.93105 0.72913 0.81084 0.79629 0.81481 0.70650 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.10 71.98 0.66 -3.88 16 2 C 0.12 4.35 3.25 44.99 0.15 4.50 16 3 C -0.15 -5.01 8.91 71.98 0.64 -4.37 16 4 N -0.56 -24.13 2.38 -803.80 -1.91 -26.04 16 5 C 0.25 12.92 4.11 85.63 0.35 13.28 16 6 C -0.50 -28.38 6.82 25.60 0.17 -28.20 16 7 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16 8 C 0.03 1.57 5.46 84.66 0.46 2.03 16 9 N -0.92 -56.60 13.29 21.45 0.28 -56.32 16 10 Si 0.94 48.43 29.54 68.60 2.03 50.46 16 11 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 13 H -0.29 -15.98 7.11 99.48 0.71 -15.27 16 14 C 0.51 21.26 7.67 87.24 0.67 21.93 16 15 O -0.56 -22.28 15.82 -3.27 -0.05 -22.33 16 16 C 0.48 20.35 7.57 87.24 0.66 21.01 16 17 O -0.47 -24.17 9.57 -3.31 -0.03 -24.20 16 18 N -0.64 -20.66 5.32 -304.94 -1.62 -22.28 16 19 C 0.12 3.63 6.29 38.17 0.24 3.87 16 20 C -0.09 -1.67 9.96 22.46 0.22 -1.44 16 21 C -0.10 -1.44 10.02 22.21 0.22 -1.21 16 22 C -0.06 -1.25 9.61 22.56 0.22 -1.03 16 23 C -0.13 -4.10 5.87 -20.11 -0.12 -4.22 16 24 C 0.52 17.40 8.27 70.34 0.58 17.98 16 25 O -0.56 -25.01 17.13 19.93 0.34 -24.66 16 26 O -0.49 -10.61 12.68 -56.19 -0.71 -11.33 16 27 C -0.09 -3.40 8.23 22.68 0.19 -3.21 16 28 H 0.05 1.72 6.51 -2.39 -0.02 1.70 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 3.30 6.91 -2.39 -0.02 3.28 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.05 2.03 7.27 -2.39 -0.02 2.01 16 35 H 0.03 1.56 6.21 -2.39 -0.01 1.54 16 36 H 0.04 2.07 5.84 -2.39 -0.01 2.05 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.43 11.03 8.30 -92.71 -0.77 10.26 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.17 2.26 7.60 -2.91 -0.02 2.24 16 42 H 0.43 5.65 9.11 -74.06 -0.67 4.98 16 43 H 0.11 5.18 5.84 -2.91 -0.02 5.16 16 Total: -1.00 -83.01 366.57 3.28 -79.73 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.36 Total: 19.95 kcal Atomic # 6 Polarization: 31.71 SS G_CDS: 5.31 Total: 37.03 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.25 Total: -104.64 kcal Atomic # 8 Polarization: -82.07 SS G_CDS: -0.45 Total: -82.52 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -83.01 3.28 -79.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566227703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.118 kcal (2) G-P(sol) polarization free energy of solvation -83.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds