Wall clock time and date at job start Tue Mar 31 2020 17:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47539 * 2 1 4 4 C 1.38386 * 119.85696 * 261.84293 * 3 2 1 5 5 C 1.37930 * 120.14652 * 180.27393 * 4 3 2 6 6 C 1.39592 * 119.85317 * 359.74955 * 5 4 3 7 7 C 1.47850 * 120.14376 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99896 * 172.20086 * 7 6 5 9 9 N 1.34776 * 120.00085 * 352.19137 * 7 6 5 10 10 C 1.47424 * 125.64773 * 184.94618 * 9 7 6 11 11 C 1.55130 * 104.71799 * 155.82075 * 10 9 7 12 12 C 1.55155 * 101.48930 * 37.29833 * 11 10 9 13 13 O 1.42892 * 110.71996 * 82.69214 * 12 11 10 14 14 C 1.50703 * 110.87542 * 205.89876 * 12 11 10 15 15 H 1.08002 * 119.99634 * 355.06199 * 14 12 11 16 16 C 1.37871 * 120.00156 * 175.06024 * 14 12 11 17 17 N 1.31517 * 120.00305 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99900 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47234 * 60.00059 * 18 16 14 20 20 H 1.48506 * 109.47303 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47356 * 300.00053 * 18 16 14 22 22 C 1.47025 * 125.64760 * 5.26147 * 9 7 6 23 23 C 1.39554 * 119.71541 * 359.97438 * 6 5 4 24 24 C 1.37986 * 119.84881 * 0.02562 * 23 6 5 25 25 N 1.48011 * 119.92496 * 179.97438 * 24 23 6 26 26 O 1.21799 * 120.00292 * 354.04414 * 25 24 23 27 27 O 1.21806 * 119.99647 * 173.76223 * 25 24 23 28 28 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47096 * 300.00477 * 1 2 3 30 30 H 1.09005 * 109.46527 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.47096 * 239.99523 * 2 1 3 32 32 H 1.09005 * 109.46527 * 120.00062 * 2 1 3 33 33 H 1.07999 * 119.92032 * 0.02745 * 4 3 2 34 34 H 1.08002 * 120.07352 * 179.77410 * 5 4 3 35 35 H 1.08993 * 110.36616 * 274.74896 * 10 9 7 36 36 H 1.08997 * 110.36843 * 37.07544 * 10 9 7 37 37 H 1.09006 * 111.19426 * 279.19144 * 11 10 9 38 38 H 1.09005 * 110.93942 * 155.29008 * 11 10 9 39 39 H 0.96705 * 113.99552 * 185.02758 * 13 12 11 40 40 H 0.96993 * 119.99993 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.87783 * 300.43367 * 22 9 7 42 42 H 1.08997 * 109.88078 * 61.44051 * 22 9 7 43 43 H 1.07996 * 120.08088 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4226 2.0135 -1.1880 5 6 2.8888 3.3116 -1.1941 6 6 2.9614 4.0294 0.0009 7 6 3.4606 5.4211 0.0018 8 8 3.3910 6.0910 1.0137 9 7 3.9929 5.9469 -1.1192 10 6 4.6187 7.2770 -1.2311 11 6 5.5797 7.1597 -2.4433 12 6 4.7600 6.2552 -3.4011 13 8 3.8142 7.0292 -4.1414 14 6 5.6696 5.4954 -4.3319 15 1 6.7327 5.6856 -4.3226 16 6 5.1446 4.5575 -5.1954 17 7 3.8500 4.3262 -5.2071 18 14 6.2720 3.6163 -6.3497 19 1 7.2692 2.8544 -5.5556 20 1 5.4673 2.6748 -7.1690 21 1 6.9758 4.5717 -7.2425 22 6 4.0397 5.2916 -2.4345 23 6 2.5609 3.4278 1.1947 24 6 2.0965 2.1285 1.1869 25 7 1.6718 1.4885 2.4521 26 8 1.8332 2.0674 3.5116 27 8 1.1563 0.3851 2.4334 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.3658 1.4570 -2.1119 34 1 3.1964 3.7718 -2.1215 35 1 3.8612 8.0383 -1.4169 36 1 5.1782 7.5105 -0.3253 37 1 6.5162 6.6799 -2.1588 38 1 5.7637 8.1366 -2.8905 39 1 3.2244 6.5022 -4.6979 40 1 3.4808 3.6661 -5.8144 41 1 4.5938 4.3557 -2.3627 42 1 3.0272 5.0966 -2.7877 43 1 2.6151 3.9776 2.1227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:12 Heat of formation + Delta-G solvation = -40.232340 kcal Electronic energy + Delta-G solvation = -29547.348979 eV Core-core repulsion = 25368.743457 eV Total energy + Delta-G solvation = -4178.605523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30321 -40.47378 -38.89381 -37.51782 -36.71718 -34.57420 -34.25085 -32.52725 -32.18091 -30.77371 -29.72711 -28.30559 -26.42817 -25.67463 -24.77315 -22.89080 -22.74792 -21.51551 -20.20291 -19.90414 -18.78594 -18.52644 -17.59642 -17.36325 -16.56008 -16.19904 -15.81865 -15.43129 -15.24830 -15.03494 -14.42756 -14.32667 -13.89727 -13.83115 -13.59291 -13.26015 -13.12979 -12.90195 -12.38979 -12.09401 -11.95189 -11.85874 -11.75643 -11.72400 -11.46747 -11.36516 -11.18867 -11.02919 -10.84716 -10.81724 -10.66858 -10.49417 -10.42379 -9.89563 -9.66438 -9.50050 -9.23470 -8.92263 -8.54292 -8.23221 -6.56254 -4.64266 -0.14929 0.55335 1.33335 1.37955 2.70854 3.05088 3.11646 3.14502 3.22711 3.55867 4.05528 4.17022 4.27000 4.53847 4.71730 4.72890 4.82876 4.97206 5.07654 5.14720 5.30631 5.38860 5.48216 5.52201 5.56004 5.64602 5.73146 5.75353 5.85725 5.95676 5.98444 6.01143 6.06284 6.16573 6.18844 6.33559 6.51084 6.53780 6.63873 6.76440 7.04123 7.47369 7.67799 7.70596 7.87159 8.30585 8.42001 9.03954 9.13234 10.51681 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003946 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.192484 B = 7094.540066 C = 8738.891376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.001 3.999 4 C -0.124 4.124 5 C -0.064 4.064 6 C -0.130 4.130 7 C 0.568 3.432 8 O -0.550 6.550 9 N -0.602 5.602 10 C 0.110 3.890 11 C -0.119 4.119 12 C 0.249 3.751 13 O -0.581 6.581 14 C -0.536 4.536 15 H 0.069 0.931 16 C 0.072 3.928 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.076 3.924 23 C 0.001 3.999 24 C -0.061 4.061 25 N 0.036 4.964 26 O -0.171 6.171 27 O -0.157 6.157 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.198 0.802 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.382 0.618 40 H 0.273 0.727 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -6.290 4.676 8.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C -0.001 4.001 4 C -0.142 4.142 5 C -0.081 4.081 6 C -0.134 4.134 7 C 0.356 3.644 8 O -0.430 6.430 9 N -0.333 5.333 10 C -0.012 4.012 11 C -0.157 4.157 12 C 0.208 3.792 13 O -0.389 6.389 14 C -0.574 4.574 15 H 0.087 0.913 16 C -0.130 4.130 17 N -0.542 5.542 18 Si 0.730 3.270 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.046 4.046 23 C -0.019 4.019 24 C -0.145 4.145 25 N 0.552 4.448 26 O -0.384 6.384 27 O -0.372 6.372 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.170 0.830 34 H 0.214 0.786 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.187 -5.265 4.893 7.862 hybrid contribution 0.122 -1.288 -0.661 1.452 sum -3.065 -6.552 4.232 8.381 Atomic orbital electron populations 1.21673 0.93242 1.02685 1.02007 1.21023 0.97651 0.90492 1.04759 1.20148 0.92302 0.97056 0.90591 1.21241 1.00274 0.95553 0.97181 1.23849 0.89121 0.93873 1.01292 1.19892 1.04725 0.95736 0.93055 1.17579 0.78505 0.85556 0.82750 1.90756 1.57885 1.61734 1.32633 1.48622 1.56374 1.18595 1.09714 1.22329 0.95881 0.83950 0.99025 1.22838 0.97410 1.01337 0.94093 1.19514 0.85876 0.86192 0.87580 1.86172 1.51038 1.39000 1.62704 1.21528 0.94560 1.20898 1.20411 0.91316 1.25034 0.95466 0.96035 0.96502 1.69644 1.11008 1.34902 1.38606 0.86452 0.80451 0.79508 0.80570 1.19964 1.20956 1.19845 1.23638 1.01487 0.98344 0.81111 1.21008 0.89597 0.91081 1.00209 1.20720 1.14041 0.95615 0.84098 1.43500 0.98271 1.00381 1.02630 1.94556 1.60009 1.65172 1.18649 1.94439 1.42898 1.06186 1.93668 0.91424 0.92124 0.92777 0.90079 0.88109 0.82962 0.78597 0.91318 0.91247 0.90240 0.90104 0.76757 0.91739 0.90160 0.90267 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.39 37.16 0.35 -1.01 16 2 C -0.10 -1.06 5.32 -27.89 -0.15 -1.21 16 3 C 0.00 0.01 5.14 -104.53 -0.54 -0.53 16 4 C -0.12 -1.55 9.65 -39.64 -0.38 -1.93 16 5 C -0.06 -0.94 8.59 -39.19 -0.34 -1.28 16 6 C -0.13 -2.10 5.87 -104.97 -0.62 -2.71 16 7 C 0.57 10.52 7.81 -12.33 -0.10 10.43 16 8 O -0.55 -11.39 16.67 5.32 0.09 -11.30 16 9 N -0.60 -11.06 3.32 -174.97 -0.58 -11.64 16 10 C 0.11 1.93 6.89 -2.41 -0.02 1.92 16 11 C -0.12 -2.16 6.24 -24.46 -0.15 -2.31 16 12 C 0.25 5.18 0.85 -89.94 -0.08 5.10 16 13 O -0.58 -12.84 13.07 -35.23 -0.46 -13.30 16 14 C -0.54 -12.16 8.13 -34.44 -0.28 -12.44 16 15 H 0.07 1.57 7.78 -52.49 -0.41 1.16 16 16 C 0.07 1.62 5.27 -17.82 -0.09 1.52 16 17 N -0.90 -19.84 10.96 55.43 0.61 -19.23 16 18 Si 0.90 18.01 29.54 -169.99 -5.02 12.99 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C 0.08 1.43 3.24 -3.06 -0.01 1.42 16 23 C 0.00 0.02 9.10 -39.18 -0.36 -0.34 16 24 C -0.06 -0.88 6.82 -80.01 -0.55 -1.43 16 25 N 0.04 0.54 4.45 33.93 0.15 0.70 16 26 O -0.17 -2.77 18.45 -29.46 -0.54 -3.31 16 27 O -0.16 -2.24 13.45 -29.46 -0.40 -2.64 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 32 H 0.10 1.10 5.97 -51.93 -0.31 0.79 16 33 H 0.15 1.56 8.04 -52.49 -0.42 1.14 16 34 H 0.20 3.13 2.77 -57.00 -0.16 2.97 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.38 8.47 7.45 45.56 0.34 8.81 16 40 H 0.27 5.81 8.31 -40.82 -0.34 5.47 16 41 H 0.08 1.55 6.34 -51.93 -0.33 1.22 16 42 H 0.08 1.53 6.58 -51.93 -0.34 1.19 16 43 H 0.16 2.51 7.23 -52.49 -0.38 2.13 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -25.02 353.30 -8.56 -33.58 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.43 Total: 13.63 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.30 Total: -4.80 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.18 Total: -30.17 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.31 Total: -30.55 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -25.02 -8.56 -33.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.649 kcal (2) G-P(sol) polarization free energy of solvation -25.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds