Wall clock time and date at job start Tue Mar 31 2020 17:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47539 * 2 1 4 4 C 1.38386 * 119.85696 * 261.84293 * 3 2 1 5 5 C 1.37930 * 120.14652 * 180.27393 * 4 3 2 6 6 C 1.39592 * 119.85317 * 359.74955 * 5 4 3 7 7 C 1.47850 * 120.14376 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99896 * 172.20086 * 7 6 5 9 9 N 1.34776 * 120.00085 * 352.19137 * 7 6 5 10 10 C 1.47424 * 125.64773 * 184.94618 * 9 7 6 11 11 C 1.55130 * 104.71799 * 155.82075 * 10 9 7 12 12 C 1.55155 * 101.48930 * 37.29833 * 11 10 9 13 13 O 1.42892 * 110.71996 * 82.69214 * 12 11 10 14 14 C 1.50703 * 110.87542 * 205.89876 * 12 11 10 15 15 H 1.08002 * 119.99634 * 355.06199 * 14 12 11 16 16 C 1.37871 * 120.00156 * 175.06024 * 14 12 11 17 17 N 1.31517 * 120.00305 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99900 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47234 * 60.00059 * 18 16 14 20 20 H 1.48506 * 109.47303 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47356 * 300.00053 * 18 16 14 22 22 C 1.47025 * 125.64760 * 5.26147 * 9 7 6 23 23 C 1.39554 * 119.71541 * 359.97438 * 6 5 4 24 24 C 1.37986 * 119.84881 * 0.02562 * 23 6 5 25 25 N 1.48011 * 119.92496 * 179.97438 * 24 23 6 26 26 O 1.21799 * 120.00292 * 354.04414 * 25 24 23 27 27 O 1.21806 * 119.99647 * 173.76223 * 25 24 23 28 28 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47096 * 300.00477 * 1 2 3 30 30 H 1.09005 * 109.46527 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.47096 * 239.99523 * 2 1 3 32 32 H 1.09005 * 109.46527 * 120.00062 * 2 1 3 33 33 H 1.07999 * 119.92032 * 0.02745 * 4 3 2 34 34 H 1.08002 * 120.07352 * 179.77410 * 5 4 3 35 35 H 1.08993 * 110.36616 * 274.74896 * 10 9 7 36 36 H 1.08997 * 110.36843 * 37.07544 * 10 9 7 37 37 H 1.09006 * 111.19426 * 279.19144 * 11 10 9 38 38 H 1.09005 * 110.93942 * 155.29008 * 11 10 9 39 39 H 0.96705 * 113.99552 * 185.02758 * 13 12 11 40 40 H 0.96993 * 119.99993 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.87783 * 300.43367 * 22 9 7 42 42 H 1.08997 * 109.88078 * 61.44051 * 22 9 7 43 43 H 1.07996 * 120.08088 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4226 2.0135 -1.1880 5 6 2.8888 3.3116 -1.1941 6 6 2.9614 4.0294 0.0009 7 6 3.4606 5.4211 0.0018 8 8 3.3910 6.0910 1.0137 9 7 3.9929 5.9469 -1.1192 10 6 4.6187 7.2770 -1.2311 11 6 5.5797 7.1597 -2.4433 12 6 4.7600 6.2552 -3.4011 13 8 3.8142 7.0292 -4.1414 14 6 5.6696 5.4954 -4.3319 15 1 6.7327 5.6856 -4.3226 16 6 5.1446 4.5575 -5.1954 17 7 3.8500 4.3262 -5.2071 18 14 6.2720 3.6163 -6.3497 19 1 7.2692 2.8544 -5.5556 20 1 5.4673 2.6748 -7.1690 21 1 6.9758 4.5717 -7.2425 22 6 4.0397 5.2916 -2.4345 23 6 2.5609 3.4278 1.1947 24 6 2.0965 2.1285 1.1869 25 7 1.6718 1.4885 2.4521 26 8 1.8332 2.0674 3.5116 27 8 1.1563 0.3851 2.4334 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.3658 1.4570 -2.1119 34 1 3.1964 3.7718 -2.1215 35 1 3.8612 8.0383 -1.4169 36 1 5.1782 7.5105 -0.3253 37 1 6.5162 6.6799 -2.1588 38 1 5.7637 8.1366 -2.8905 39 1 3.2244 6.5022 -4.6979 40 1 3.4808 3.6661 -5.8144 41 1 4.5938 4.3557 -2.3627 42 1 3.0272 5.0966 -2.7877 43 1 2.6151 3.9776 2.1227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:12 Heat of formation + Delta-G solvation = -53.360397 kcal Electronic energy + Delta-G solvation = -29547.918255 eV Core-core repulsion = 25368.743457 eV Total energy + Delta-G solvation = -4179.174798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.48289 -41.82558 -40.16962 -39.04881 -37.90479 -36.15381 -35.32244 -34.21624 -33.38110 -32.08442 -30.92863 -29.82161 -27.65375 -27.18867 -26.00804 -24.15998 -23.89288 -22.59871 -21.65184 -21.33187 -20.06887 -19.77591 -19.02205 -18.78066 -17.93869 -17.60546 -17.02778 -16.79118 -16.63823 -16.48724 -15.94303 -15.40866 -14.96625 -14.93862 -14.91325 -14.79521 -14.62824 -14.14917 -13.64470 -13.48569 -13.39799 -13.15026 -13.05364 -12.78420 -12.73130 -12.57811 -12.40478 -12.38194 -12.34403 -12.25079 -12.11627 -11.99435 -11.50722 -11.36806 -11.09829 -10.80253 -10.60648 -10.37097 -10.20398 -9.72277 -8.24630 -6.37873 -1.30923 -0.62815 0.17500 0.21899 1.42435 1.47083 1.52367 1.56370 1.81342 2.28113 2.42052 2.99327 3.05488 3.18540 3.39528 3.61140 3.62692 3.74739 3.90427 3.99050 4.09428 4.17917 4.27732 4.35594 4.39088 4.43892 4.53023 4.65782 4.70061 4.80217 4.82095 4.86286 4.96055 5.04715 5.07235 5.13791 5.19484 5.23765 5.28498 5.44964 5.45788 5.76704 6.05579 6.37186 6.48666 6.66623 6.86095 7.32082 7.40648 8.82047 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003946 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.192484 B = 7094.540066 C = 8738.891376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C 0.014 3.986 4 C -0.111 4.111 5 C -0.063 4.063 6 C -0.144 4.144 7 C 0.565 3.435 8 O -0.578 6.578 9 N -0.604 5.604 10 C 0.110 3.890 11 C -0.113 4.113 12 C 0.234 3.766 13 O -0.589 6.589 14 C -0.559 4.559 15 H 0.061 0.939 16 C 0.046 3.954 17 N -0.906 5.906 18 Si 0.951 3.049 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.094 3.906 23 C -0.003 4.003 24 C -0.068 4.068 25 N 0.036 4.964 26 O -0.219 6.219 27 O -0.121 6.121 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.379 0.621 40 H 0.276 0.724 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 -8.516 3.589 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C 0.012 3.988 4 C -0.129 4.129 5 C -0.081 4.081 6 C -0.148 4.148 7 C 0.355 3.645 8 O -0.461 6.461 9 N -0.334 5.334 10 C -0.011 4.011 11 C -0.151 4.151 12 C 0.194 3.806 13 O -0.398 6.398 14 C -0.597 4.597 15 H 0.079 0.921 16 C -0.157 4.157 17 N -0.544 5.544 18 Si 0.777 3.223 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.208 1.208 22 C -0.027 4.027 23 C -0.023 4.023 24 C -0.152 4.152 25 N 0.550 4.450 26 O -0.419 6.419 27 O -0.347 6.347 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.202 0.798 34 H 0.203 0.797 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.229 0.771 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.505 -7.398 3.872 9.055 hybrid contribution 0.173 -0.704 -0.400 0.828 sum -3.332 -8.102 3.472 9.423 Atomic orbital electron populations 1.21689 0.92591 1.03886 1.01395 1.21164 0.97998 0.88677 1.06103 1.20509 0.90583 0.98097 0.89594 1.21530 0.98628 0.94518 0.98274 1.23697 0.89544 0.94828 1.00011 1.19676 1.06347 0.94756 0.93974 1.17951 0.77959 0.86404 0.82199 1.90730 1.59119 1.62741 1.33481 1.48663 1.56358 1.18822 1.09595 1.22353 0.95812 0.83710 0.99257 1.22815 0.97410 1.01258 0.93614 1.19708 0.85976 0.87019 0.87905 1.86169 1.51231 1.39445 1.62915 1.21696 0.94537 1.21830 1.21623 0.92125 1.25486 0.96473 0.96458 0.97259 1.69682 1.11367 1.34802 1.38592 0.85720 0.79156 0.78360 0.79023 1.19898 1.20499 1.20825 1.23355 1.00903 0.97650 0.80821 1.20887 0.90124 0.91700 0.99624 1.20819 1.14431 0.95483 0.84421 1.43579 0.98237 1.00406 1.02736 1.94578 1.62299 1.65833 1.19165 1.94408 1.40927 1.05690 1.93648 0.89372 0.94007 0.92135 0.87102 0.88442 0.79811 0.79661 0.91490 0.90213 0.89595 0.89529 0.77136 0.91450 0.90405 0.90654 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.39 71.98 0.68 -1.54 16 2 C -0.10 -1.72 5.32 29.85 0.16 -1.56 16 3 C 0.01 0.31 5.14 -19.81 -0.10 0.21 16 4 C -0.11 -2.45 9.65 22.23 0.21 -2.23 16 5 C -0.06 -1.78 8.59 22.52 0.19 -1.58 16 6 C -0.14 -4.62 5.87 -20.09 -0.12 -4.74 16 7 C 0.56 21.21 7.81 86.79 0.68 21.88 16 8 O -0.58 -24.52 16.67 -3.88 -0.06 -24.58 16 9 N -0.60 -22.21 3.32 -825.77 -2.75 -24.96 16 10 C 0.11 3.86 6.89 86.93 0.60 4.46 16 11 C -0.11 -4.06 6.24 32.06 0.20 -3.86 16 12 C 0.23 9.68 0.85 -10.35 -0.01 9.67 16 13 O -0.59 -26.01 13.07 -148.98 -1.95 -27.96 16 14 C -0.56 -25.11 8.13 25.60 0.21 -24.90 16 15 H 0.06 2.75 7.78 -2.91 -0.02 2.73 16 16 C 0.05 1.98 5.27 84.65 0.45 2.43 16 17 N -0.91 -38.68 10.96 21.45 0.24 -38.45 16 18 Si 0.95 35.90 29.54 68.60 2.03 37.93 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 22 C 0.09 3.54 3.24 86.73 0.28 3.82 16 23 C 0.00 -0.10 9.10 22.53 0.21 0.11 16 24 C -0.07 -1.89 6.82 36.34 0.25 -1.64 16 25 N 0.04 1.04 4.45 -46.55 -0.21 0.84 16 26 O -0.22 -7.22 18.45 18.89 0.35 -6.87 16 27 O -0.12 -3.22 13.45 18.88 0.25 -2.97 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.83 6.54 -2.39 -0.02 0.81 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.11 1.29 8.02 -2.39 -0.02 1.27 16 32 H 0.10 1.77 5.97 -2.38 -0.01 1.76 16 33 H 0.18 2.92 8.04 -2.91 -0.02 2.89 16 34 H 0.19 5.72 2.77 -7.15 -0.02 5.70 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 37 H 0.09 2.95 8.05 -2.38 -0.02 2.93 16 38 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 39 H 0.38 16.79 7.45 -74.05 -0.55 16.24 16 40 H 0.28 11.26 8.31 -92.71 -0.77 10.49 16 41 H 0.08 2.96 6.34 -2.38 -0.02 2.95 16 42 H 0.08 2.89 6.58 -2.39 -0.02 2.87 16 43 H 0.15 4.93 7.23 -2.91 -0.02 4.91 16 Total: -1.00 -52.90 353.30 2.29 -50.60 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.52 Total: 35.90 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 3.88 Total: 0.51 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -2.72 Total: -62.57 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.41 Total: -62.38 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -52.90 2.29 -50.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.757 kcal (2) G-P(sol) polarization free energy of solvation -52.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds