Wall clock time and date at job start Tue Mar 31 2020 17:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47116 * 2 1 4 4 C 1.38380 * 119.85322 * 256.40303 * 3 2 1 5 5 C 1.37939 * 120.14697 * 179.97438 * 4 3 2 6 6 C 1.39603 * 119.84860 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.14176 * 180.27729 * 6 5 4 8 8 O 1.21552 * 119.99838 * 159.91381 * 7 6 5 9 9 N 1.34775 * 120.00149 * 339.92259 * 7 6 5 10 10 C 1.47425 * 125.64805 * 354.47296 * 9 7 6 11 11 C 1.54910 * 104.83199 * 204.09519 * 10 9 7 12 12 C 1.55157 * 101.58341 * 322.99224 * 11 10 9 13 13 O 1.42899 * 110.71705 * 277.13853 * 12 11 10 14 14 C 1.50703 * 110.71836 * 154.04412 * 12 11 10 15 15 H 1.07997 * 120.00307 * 359.97438 * 14 12 11 16 16 C 1.37887 * 119.99464 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00063 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99433 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46941 * 60.00518 * 18 16 14 20 20 H 1.48498 * 109.46806 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47624 * 299.99825 * 18 16 14 22 22 C 1.47026 * 125.65163 * 174.17298 * 9 7 6 23 23 C 1.39554 * 119.71118 * 0.02562 * 6 5 4 24 24 C 1.37974 * 119.85443 * 359.97438 * 23 6 5 25 25 N 1.48018 * 119.92946 * 180.02562 * 24 23 6 26 26 O 1.21798 * 119.99835 * 5.68229 * 25 24 23 27 27 O 1.21797 * 120.00248 * 185.68914 * 25 24 23 28 28 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46711 * 299.99637 * 1 2 3 30 30 H 1.08995 * 109.47228 * 59.99687 * 1 2 3 31 31 H 1.09004 * 109.47189 * 240.00163 * 2 1 3 32 32 H 1.09002 * 109.47625 * 120.00365 * 2 1 3 33 33 H 1.08003 * 119.93208 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.07824 * 180.02562 * 5 4 3 35 35 H 1.09000 * 110.37021 * 322.93432 * 10 9 7 36 36 H 1.08999 * 110.36304 * 85.15088 * 10 9 7 37 37 H 1.08996 * 111.00564 * 81.06677 * 11 10 9 38 38 H 1.09004 * 111.00765 * 204.91648 * 11 10 9 39 39 H 0.96705 * 113.99745 * 179.97438 * 13 12 11 40 40 H 0.96998 * 119.99647 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.87740 * 298.39365 * 22 9 7 42 42 H 1.08996 * 109.88189 * 59.54931 * 22 9 7 43 43 H 1.08007 * 120.07085 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5280 1.9762 -1.1665 5 6 2.9888 3.2763 -1.1735 6 6 2.9549 4.0318 -0.0001 7 6 3.4415 5.4279 -0.0017 8 8 3.0928 6.1940 0.8752 9 7 4.2717 5.8511 -0.9755 10 6 4.8626 5.0053 -2.0285 11 6 6.1453 5.7554 -2.4663 12 6 5.6853 7.2348 -2.3817 13 8 4.9843 7.6149 -3.5675 14 6 6.8619 8.1462 -2.1448 15 1 7.8560 7.7334 -2.0585 16 6 6.6688 9.5073 -2.0373 17 7 5.4581 10.0100 -2.1420 18 14 8.1271 10.6370 -1.7430 19 1 9.0938 10.4990 -2.8619 20 1 7.6563 12.0433 -1.6669 21 1 8.7905 10.2669 -0.4671 22 6 4.7330 7.2338 -1.1673 23 6 2.4548 3.4653 1.1731 24 6 1.9969 2.1637 1.1664 25 7 1.4656 1.5614 2.4097 26 8 1.3363 2.2439 3.4101 27 8 1.1579 0.3831 2.4324 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.5540 1.3905 -2.0736 34 1 3.3750 3.7088 -2.0846 35 1 5.1152 4.0231 -1.6290 36 1 4.1735 4.9071 -2.8673 37 1 6.9662 5.5614 -1.7760 38 1 6.4239 5.4906 -3.4864 39 1 4.6749 8.5311 -3.5649 40 1 5.3223 10.9674 -2.0659 41 1 3.8809 7.8853 -1.3613 42 1 5.2669 7.5730 -0.2796 43 1 2.4263 4.0444 2.0844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:17 Heat of formation + Delta-G solvation = -48.523442 kcal Electronic energy + Delta-G solvation = -28997.040027 eV Core-core repulsion = 24818.074975 eV Total energy + Delta-G solvation = -4178.965052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.44629 -40.52577 -38.98227 -37.43578 -36.83410 -34.80045 -34.26735 -32.29172 -32.25589 -30.70627 -29.98077 -28.21822 -26.64862 -25.81676 -24.38427 -23.25738 -22.82036 -21.72471 -20.30584 -19.75273 -18.84723 -18.56264 -17.70946 -17.35645 -16.56937 -16.29156 -16.01579 -15.70447 -15.10985 -15.00292 -14.57225 -14.36696 -14.14054 -13.93072 -13.42833 -13.34358 -13.07839 -12.85318 -12.62894 -12.37241 -12.17943 -11.93620 -11.69086 -11.64401 -11.56323 -11.47852 -11.15656 -11.10002 -10.94185 -10.85448 -10.67486 -10.61872 -10.32404 -9.90154 -9.78809 -9.48709 -9.39307 -8.78082 -8.48595 -8.17972 -6.41111 -4.50167 -0.34386 0.39130 1.13804 1.22948 2.58078 3.14050 3.19780 3.21901 3.24126 3.41054 3.98841 4.03917 4.17558 4.34067 4.47997 4.55882 4.74033 4.85243 4.86883 4.95490 5.12217 5.17163 5.25083 5.37026 5.42261 5.51062 5.57870 5.59673 5.69791 5.75508 5.79696 5.86386 5.88953 6.01894 6.27814 6.34975 6.55544 6.64549 6.70507 7.09323 7.18567 7.54072 7.61483 7.81876 7.89770 8.34542 8.53213 9.18258 9.29040 10.66781 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.002720 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.362173 B =10292.082248 C =10938.477553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C 0.000 4.000 4 C -0.127 4.127 5 C -0.049 4.049 6 C -0.123 4.123 7 C 0.561 3.439 8 O -0.536 6.536 9 N -0.600 5.600 10 C 0.090 3.910 11 C -0.119 4.119 12 C 0.250 3.750 13 O -0.587 6.587 14 C -0.540 4.540 15 H 0.068 0.932 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.100 3.900 23 C 0.001 3.999 24 C -0.056 4.056 25 N 0.034 4.966 26 O -0.164 6.164 27 O -0.156 6.156 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.388 0.612 40 H 0.273 0.727 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 -17.719 -0.694 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C -0.001 4.001 4 C -0.146 4.146 5 C -0.067 4.067 6 C -0.127 4.127 7 C 0.348 3.652 8 O -0.414 6.414 9 N -0.332 5.332 10 C -0.032 4.032 11 C -0.157 4.157 12 C 0.210 3.790 13 O -0.397 6.397 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.021 4.021 23 C -0.019 4.019 24 C -0.139 4.139 25 N 0.551 4.449 26 O -0.378 6.378 27 O -0.371 6.371 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.170 0.830 34 H 0.182 0.818 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.240 0.760 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.788 -17.443 -0.920 18.401 hybrid contribution 0.432 1.226 0.694 1.473 sum -5.357 -16.217 -0.225 17.081 Atomic orbital electron populations 1.21693 0.93441 1.02866 1.01830 1.21069 0.97451 0.90444 1.05174 1.20102 0.92491 0.96962 0.90581 1.21142 1.00330 0.95630 0.97481 1.22640 0.91577 0.93315 0.99177 1.20047 1.03353 0.95842 0.93425 1.17575 0.79601 0.86100 0.81881 1.90806 1.58484 1.55911 1.36242 1.48676 1.44761 1.12512 1.27222 1.22728 0.96243 0.94101 0.90149 1.22808 0.95038 0.96178 1.01627 1.19468 0.88426 0.90050 0.81104 1.86063 1.76704 1.35758 1.41178 1.21464 0.93728 0.91563 1.51078 0.91424 1.25080 0.96446 0.98370 0.93315 1.69544 1.20599 1.14015 1.49331 0.86418 0.82044 0.79240 0.79007 1.19915 1.20986 1.19956 1.23201 0.98823 0.78431 1.01654 1.21068 0.89494 0.91183 1.00131 1.20764 1.11973 0.95719 0.85433 1.43497 0.98348 1.00658 1.02356 1.94583 1.58012 1.61432 1.23803 1.94435 1.52199 0.99707 1.90726 0.91192 0.92523 0.92797 0.90044 0.87423 0.83007 0.81780 0.91377 0.90933 0.90240 0.90089 0.76006 0.91693 0.91325 0.91068 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.35 37.16 0.35 -0.77 16 2 C -0.10 -0.82 5.35 -27.88 -0.15 -0.97 16 3 C 0.00 0.00 5.16 -104.53 -0.54 -0.54 16 4 C -0.13 -1.07 9.65 -39.64 -0.38 -1.46 16 5 C -0.05 -0.52 8.11 -39.18 -0.32 -0.84 16 6 C -0.12 -1.72 5.75 -104.97 -0.60 -2.33 16 7 C 0.56 10.30 7.69 -12.33 -0.09 10.21 16 8 O -0.54 -11.84 16.86 5.32 0.09 -11.75 16 9 N -0.60 -11.09 3.33 -171.63 -0.57 -11.66 16 10 C 0.09 1.34 4.93 -2.53 -0.01 1.32 16 11 C -0.12 -2.09 6.23 -24.58 -0.15 -2.24 16 12 C 0.25 5.57 0.86 -89.93 -0.08 5.50 16 13 O -0.59 -13.69 13.07 -35.23 -0.46 -14.15 16 14 C -0.54 -13.32 8.12 -34.44 -0.28 -13.60 16 15 H 0.07 1.64 7.76 -52.49 -0.41 1.23 16 16 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 17 N -0.90 -22.79 10.97 55.43 0.61 -22.18 16 18 Si 0.91 19.70 29.54 -169.99 -5.02 14.68 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 C 0.10 2.24 5.55 -3.06 -0.02 2.22 16 23 C 0.00 0.02 9.09 -39.19 -0.36 -0.34 16 24 C -0.06 -0.69 6.77 -80.01 -0.54 -1.23 16 25 N 0.03 0.47 4.34 33.93 0.15 0.61 16 26 O -0.16 -2.49 18.45 -29.46 -0.54 -3.03 16 27 O -0.16 -1.99 13.50 -29.46 -0.40 -2.39 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 6.44 -51.93 -0.33 0.22 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.44 7.96 -51.93 -0.41 0.03 16 32 H 0.11 0.93 5.96 -51.93 -0.31 0.62 16 33 H 0.15 0.77 8.00 -52.48 -0.42 0.35 16 34 H 0.17 1.56 4.16 -52.49 -0.22 1.34 16 35 H 0.07 0.80 6.59 -51.93 -0.34 0.45 16 36 H 0.07 0.97 6.93 -51.93 -0.36 0.61 16 37 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.39 9.46 6.98 45.56 0.32 9.78 16 40 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 41 H 0.07 1.68 8.07 -51.93 -0.42 1.26 16 42 H 0.07 1.76 7.82 -51.93 -0.41 1.35 16 43 H 0.16 2.39 7.34 -52.48 -0.39 2.00 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -28.69 354.04 -8.60 -37.29 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.52 Total: 10.60 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.27 Total: -3.37 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.18 Total: -33.22 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.31 Total: -31.31 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.69 -8.60 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.230 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds