Wall clock time and date at job start Tue Mar 31 2020 17:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47116 * 2 1 4 4 C 1.38380 * 119.85322 * 256.40303 * 3 2 1 5 5 C 1.37939 * 120.14697 * 179.97438 * 4 3 2 6 6 C 1.39603 * 119.84860 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.14176 * 180.27729 * 6 5 4 8 8 O 1.21552 * 119.99838 * 159.91381 * 7 6 5 9 9 N 1.34775 * 120.00149 * 339.92259 * 7 6 5 10 10 C 1.47425 * 125.64805 * 354.47296 * 9 7 6 11 11 C 1.54910 * 104.83199 * 204.09519 * 10 9 7 12 12 C 1.55157 * 101.58341 * 322.99224 * 11 10 9 13 13 O 1.42899 * 110.71705 * 277.13853 * 12 11 10 14 14 C 1.50703 * 110.71836 * 154.04412 * 12 11 10 15 15 H 1.07997 * 120.00307 * 359.97438 * 14 12 11 16 16 C 1.37887 * 119.99464 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00063 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99433 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46941 * 60.00518 * 18 16 14 20 20 H 1.48498 * 109.46806 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47624 * 299.99825 * 18 16 14 22 22 C 1.47026 * 125.65163 * 174.17298 * 9 7 6 23 23 C 1.39554 * 119.71118 * 0.02562 * 6 5 4 24 24 C 1.37974 * 119.85443 * 359.97438 * 23 6 5 25 25 N 1.48018 * 119.92946 * 180.02562 * 24 23 6 26 26 O 1.21798 * 119.99835 * 5.68229 * 25 24 23 27 27 O 1.21797 * 120.00248 * 185.68914 * 25 24 23 28 28 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46711 * 299.99637 * 1 2 3 30 30 H 1.08995 * 109.47228 * 59.99687 * 1 2 3 31 31 H 1.09004 * 109.47189 * 240.00163 * 2 1 3 32 32 H 1.09002 * 109.47625 * 120.00365 * 2 1 3 33 33 H 1.08003 * 119.93208 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.07824 * 180.02562 * 5 4 3 35 35 H 1.09000 * 110.37021 * 322.93432 * 10 9 7 36 36 H 1.08999 * 110.36304 * 85.15088 * 10 9 7 37 37 H 1.08996 * 111.00564 * 81.06677 * 11 10 9 38 38 H 1.09004 * 111.00765 * 204.91648 * 11 10 9 39 39 H 0.96705 * 113.99745 * 179.97438 * 13 12 11 40 40 H 0.96998 * 119.99647 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.87740 * 298.39365 * 22 9 7 42 42 H 1.08996 * 109.88189 * 59.54931 * 22 9 7 43 43 H 1.08007 * 120.07085 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5280 1.9762 -1.1665 5 6 2.9888 3.2763 -1.1735 6 6 2.9549 4.0318 -0.0001 7 6 3.4415 5.4279 -0.0017 8 8 3.0928 6.1940 0.8752 9 7 4.2717 5.8511 -0.9755 10 6 4.8626 5.0053 -2.0285 11 6 6.1453 5.7554 -2.4663 12 6 5.6853 7.2348 -2.3817 13 8 4.9843 7.6149 -3.5675 14 6 6.8619 8.1462 -2.1448 15 1 7.8560 7.7334 -2.0585 16 6 6.6688 9.5073 -2.0373 17 7 5.4581 10.0100 -2.1420 18 14 8.1271 10.6370 -1.7430 19 1 9.0938 10.4990 -2.8619 20 1 7.6563 12.0433 -1.6669 21 1 8.7905 10.2669 -0.4671 22 6 4.7330 7.2338 -1.1673 23 6 2.4548 3.4653 1.1731 24 6 1.9969 2.1637 1.1664 25 7 1.4656 1.5614 2.4097 26 8 1.3363 2.2439 3.4101 27 8 1.1579 0.3831 2.4324 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.5540 1.3905 -2.0736 34 1 3.3750 3.7088 -2.0846 35 1 5.1152 4.0231 -1.6290 36 1 4.1735 4.9071 -2.8673 37 1 6.9662 5.5614 -1.7760 38 1 6.4239 5.4906 -3.4864 39 1 4.6749 8.5311 -3.5649 40 1 5.3223 10.9674 -2.0659 41 1 3.8809 7.8853 -1.3613 42 1 5.2669 7.5730 -0.2796 43 1 2.4263 4.0444 2.0844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:15 Heat of formation + Delta-G solvation = -66.822438 kcal Electronic energy + Delta-G solvation = -28997.833531 eV Core-core repulsion = 24818.074975 eV Total energy + Delta-G solvation = -4179.758556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.47724 -41.76034 -40.18083 -38.99284 -37.89766 -36.35783 -35.20931 -34.19264 -33.21959 -31.99903 -31.07272 -29.76872 -27.80166 -27.25152 -25.67978 -24.37623 -23.79401 -22.62998 -21.61017 -21.32800 -19.96684 -19.73313 -19.16049 -18.75048 -17.80574 -17.43438 -17.28296 -16.95381 -16.72753 -16.29926 -16.00336 -15.33291 -15.03933 -14.93525 -14.87878 -14.77513 -14.47885 -14.07298 -13.91370 -13.50733 -13.42137 -13.22468 -13.00504 -12.84185 -12.79501 -12.54087 -12.42202 -12.37091 -12.36126 -12.30795 -12.13619 -12.06347 -11.49191 -11.26787 -11.20995 -10.77650 -10.64905 -10.34199 -10.32987 -9.72132 -8.30888 -6.46083 -1.31863 -0.59673 0.17940 0.24727 1.40397 1.42114 1.44464 1.49202 1.80103 2.26072 2.35337 2.95974 3.04392 3.21019 3.39183 3.57914 3.61464 3.74900 3.83444 4.07094 4.15448 4.21042 4.29779 4.37429 4.39278 4.44389 4.54966 4.61332 4.69229 4.79207 4.83703 4.94202 4.98531 5.06694 5.10106 5.14962 5.21755 5.29011 5.33610 5.45489 5.47741 5.72332 6.00075 6.42358 6.46834 6.61259 6.89209 7.26169 7.35506 8.74854 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.002720 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.362173 B =10292.082248 C =10938.477553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.013 3.987 4 C -0.100 4.100 5 C -0.035 4.035 6 C -0.137 4.137 7 C 0.556 3.444 8 O -0.591 6.591 9 N -0.603 5.603 10 C 0.092 3.908 11 C -0.114 4.114 12 C 0.235 3.765 13 O -0.586 6.586 14 C -0.558 4.558 15 H 0.069 0.931 16 C 0.026 3.974 17 N -0.917 5.917 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.116 3.884 23 C -0.012 4.012 24 C -0.066 4.066 25 N 0.034 4.966 26 O -0.235 6.235 27 O -0.112 6.112 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.207 0.793 34 H 0.184 0.816 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.379 0.621 40 H 0.271 0.729 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -21.817 -3.649 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C 0.011 3.989 4 C -0.118 4.118 5 C -0.053 4.053 6 C -0.141 4.141 7 C 0.346 3.654 8 O -0.473 6.473 9 N -0.333 5.333 10 C -0.029 4.029 11 C -0.152 4.152 12 C 0.195 3.805 13 O -0.395 6.395 14 C -0.596 4.596 15 H 0.087 0.913 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.786 3.214 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.007 4.007 23 C -0.033 4.033 24 C -0.150 4.150 25 N 0.548 4.452 26 O -0.431 6.431 27 O -0.341 6.341 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.224 0.776 34 H 0.201 0.799 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.307 -21.448 -3.809 22.421 hybrid contribution 0.240 2.320 1.541 2.796 sum -5.067 -19.128 -2.269 19.917 Atomic orbital electron populations 1.21720 0.93493 1.03813 1.00976 1.21210 0.97190 0.88811 1.06918 1.20605 0.90835 0.97820 0.89637 1.21690 0.97194 0.94518 0.98410 1.22830 0.90751 0.93848 0.97862 1.19597 1.05682 0.93658 0.95178 1.18294 0.78671 0.87693 0.80695 1.90767 1.60289 1.57937 1.38297 1.48664 1.44932 1.11429 1.28314 1.23039 0.95103 0.94762 0.89961 1.22807 0.96509 0.92765 1.03078 1.19670 0.87540 0.92852 0.80455 1.86047 1.76770 1.35062 1.41638 1.21856 0.94656 0.92334 1.50785 0.91322 1.25791 0.98482 0.99832 0.93360 1.69649 1.21952 1.13975 1.50082 0.85558 0.79528 0.77449 0.78840 1.19055 1.21100 1.20088 1.22687 0.97213 0.80489 1.00347 1.20843 0.90879 0.92043 0.99508 1.20867 1.12813 0.95561 0.85720 1.43703 0.98172 1.00613 1.02688 1.94610 1.61525 1.61922 1.25057 1.94386 1.49647 0.99515 1.90595 0.89409 0.95298 0.91771 0.85885 0.88178 0.77585 0.79913 0.86989 0.88339 0.89963 0.88171 0.77027 0.91940 0.94710 0.94822 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.35 71.98 0.67 -0.98 16 2 C -0.10 -1.08 5.35 29.85 0.16 -0.92 16 3 C 0.01 0.20 5.16 -19.81 -0.10 0.09 16 4 C -0.10 -1.04 9.65 22.23 0.21 -0.83 16 5 C -0.04 -0.58 8.11 22.53 0.18 -0.40 16 6 C -0.14 -3.73 5.75 -20.09 -0.12 -3.84 16 7 C 0.56 21.06 7.69 86.79 0.67 21.73 16 8 O -0.59 -28.20 16.86 -3.88 -0.07 -28.27 16 9 N -0.60 -22.28 3.33 -815.18 -2.71 -25.00 16 10 C 0.09 2.41 4.93 86.86 0.43 2.84 16 11 C -0.11 -3.75 6.23 31.99 0.20 -3.55 16 12 C 0.24 10.55 0.86 -10.35 -0.01 10.54 16 13 O -0.59 -27.39 13.07 -148.98 -1.95 -29.34 16 14 C -0.56 -27.90 8.12 25.60 0.21 -27.69 16 15 H 0.07 3.32 7.76 -2.91 -0.02 3.30 16 16 C 0.03 1.33 5.28 84.66 0.45 1.78 16 17 N -0.92 -48.40 10.97 21.45 0.24 -48.16 16 18 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 22 C 0.12 5.42 5.55 86.73 0.48 5.90 16 23 C -0.01 -0.35 9.09 22.52 0.20 -0.15 16 24 C -0.07 -1.57 6.77 36.34 0.25 -1.33 16 25 N 0.03 0.92 4.34 -46.56 -0.20 0.72 16 26 O -0.23 -7.70 18.45 18.89 0.35 -7.35 16 27 O -0.11 -2.71 13.50 18.89 0.26 -2.46 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.03 0.49 6.44 -2.39 -0.02 0.48 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.12 0.37 7.96 -2.39 -0.02 0.35 16 32 H 0.10 1.27 5.96 -2.39 -0.01 1.25 16 33 H 0.21 0.10 8.00 -2.91 -0.02 0.08 16 34 H 0.18 2.38 4.16 -2.91 -0.01 2.37 16 35 H 0.11 2.02 6.59 -2.39 -0.02 2.01 16 36 H 0.10 2.14 6.93 -2.39 -0.02 2.13 16 37 H 0.08 2.65 8.03 -2.39 -0.02 2.63 16 38 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.38 19.04 6.98 -74.05 -0.52 18.52 16 40 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.03 1.82 8.07 -2.38 -0.02 1.80 16 42 H 0.03 1.78 7.82 -2.39 -0.02 1.76 16 43 H 0.14 4.51 7.34 -2.91 -0.02 4.49 16 Total: -1.00 -70.22 354.04 2.38 -67.84 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.56 Total: 25.79 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 3.89 Total: 3.19 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -2.68 Total: -72.44 kcal Atomic # 8 Polarization: -66.01 SS G_CDS: -1.41 Total: -67.42 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -70.22 2.38 -67.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.019 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds