Wall clock time and date at job start Tue Mar 31 2020 18:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47439 * 2 1 4 4 C 1.50704 * 109.47505 * 239.99226 * 2 1 3 5 5 O 1.21276 * 120.00044 * 240.00383 * 4 2 1 6 6 N 1.34771 * 119.99630 * 60.00297 * 4 2 1 7 7 C 1.47429 * 125.64848 * 359.69709 * 6 4 2 8 8 C 1.55125 * 104.72116 * 155.81718 * 7 6 4 9 9 C 1.55160 * 101.48888 * 37.29315 * 8 7 6 10 10 O 1.42895 * 110.72078 * 82.69525 * 9 8 7 11 11 C 1.50700 * 110.87020 * 205.89932 * 9 8 7 12 12 H 1.08006 * 120.00318 * 20.73322 * 11 9 8 13 13 C 1.37877 * 119.99777 * 200.73114 * 11 9 8 14 14 N 1.31517 * 120.00340 * 173.63156 * 13 11 9 15 15 Si 1.86808 * 119.99908 * 353.62863 * 13 11 9 16 16 H 1.48503 * 109.46756 * 86.34118 * 15 13 11 17 17 H 1.48497 * 109.46821 * 206.33727 * 15 13 11 18 18 H 1.48495 * 109.47034 * 326.33790 * 15 13 11 19 19 C 1.47020 * 125.64735 * 179.97438 * 6 4 2 20 20 C 1.50701 * 109.46708 * 119.99522 * 2 1 3 21 21 C 1.38254 * 120.00454 * 59.72860 * 20 2 1 22 22 C 1.38206 * 120.00707 * 179.78990 * 21 20 2 23 23 C 1.38259 * 120.00019 * 0.43534 * 22 21 20 24 24 C 1.38215 * 119.99480 * 359.81729 * 23 22 21 25 25 N 1.48020 * 119.99833 * 179.97438 * 24 23 22 26 26 O 1.21796 * 120.00167 * 179.97438 * 25 24 23 27 27 O 1.21799 * 120.00257 * 359.97143 * 25 24 23 28 28 C 1.38221 * 120.00207 * 239.99834 * 20 2 1 29 29 H 1.08993 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47336 * 300.00839 * 1 2 3 31 31 H 1.09013 * 109.46908 * 60.00289 * 1 2 3 32 32 H 1.09003 * 110.36454 * 274.74009 * 7 6 4 33 33 H 1.08995 * 110.36990 * 37.06414 * 7 6 4 34 34 H 1.08996 * 111.19373 * 279.18763 * 8 7 6 35 35 H 1.09003 * 110.94149 * 155.28763 * 8 7 6 36 36 H 0.96704 * 113.99924 * 61.14735 * 10 9 8 37 37 H 0.96996 * 120.00317 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.88496 * 300.44594 * 19 6 4 39 39 H 1.09005 * 109.88285 * 61.45767 * 19 6 4 40 40 H 1.08007 * 119.99500 * 359.97438 * 21 20 2 41 41 H 1.08002 * 120.00627 * 180.27561 * 22 21 20 42 42 H 1.07998 * 120.00463 * 179.83246 * 23 22 21 43 43 H 1.07999 * 119.99504 * 359.97438 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.7296 -1.6966 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 0.8659 0.9281 -2.7337 8 6 1.2943 1.3912 -4.1509 9 6 1.5391 0.0325 -4.8591 10 8 0.3100 -0.5167 -5.3381 11 6 2.5278 0.1851 -5.9862 12 1 3.2016 1.0290 -6.0030 13 6 2.5721 -0.7527 -6.9960 14 7 3.3446 -0.5566 -8.0421 15 14 1.5349 -2.3019 -6.8781 16 1 0.1790 -2.0321 -7.4204 17 1 2.1753 -3.3872 -7.6636 18 1 1.4259 -2.7176 -5.4567 19 6 2.1268 -0.8432 -3.7325 20 6 2.0322 -0.7103 1.2306 21 6 1.6935 -2.0323 1.4524 22 6 2.1577 -2.6850 2.5787 23 6 2.9533 -2.0134 3.4883 24 6 3.2876 -0.6903 3.2693 25 7 4.1389 0.0290 4.2434 26 8 4.4339 1.1948 4.0502 27 8 4.5444 -0.5450 5.2382 28 6 2.8268 -0.0386 2.1404 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.1886 0.6522 -2.7249 33 1 1.0594 1.7139 -2.0036 34 1 2.2093 1.9822 -4.1125 35 1 0.4929 1.9468 -4.6380 36 1 -0.1414 0.0378 -5.9892 37 1 3.3761 -1.2165 -8.7523 38 1 3.2148 -0.8509 -3.7979 39 1 1.7436 -1.8605 -3.8129 40 1 1.0687 -2.5558 0.7438 41 1 1.8968 -3.7190 2.7497 42 1 3.3138 -2.5227 4.3698 43 1 3.0881 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:11 Heat of formation + Delta-G solvation = -54.614744 kcal Electronic energy + Delta-G solvation = -28877.282476 eV Core-core repulsion = 24698.053286 eV Total energy + Delta-G solvation = -4179.229191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35056 -40.64384 -39.35489 -37.74414 -36.73006 -35.02295 -34.54079 -32.47430 -32.13349 -30.79129 -29.88583 -28.53155 -26.76327 -25.71108 -24.72015 -23.06728 -22.91051 -21.80384 -20.11614 -19.57568 -18.83530 -18.48407 -17.69272 -17.53914 -17.16015 -16.80154 -15.85280 -15.80840 -15.35203 -15.12900 -14.90758 -14.50081 -14.20982 -13.93253 -13.41796 -13.31506 -13.07813 -12.83981 -12.63335 -12.56786 -12.27100 -12.09712 -12.03452 -11.85282 -11.73750 -11.56747 -11.39362 -11.30724 -11.28729 -11.05043 -10.71444 -10.40115 -10.29925 -9.84625 -9.71671 -9.45212 -9.32307 -8.78189 -8.64853 -8.27656 -6.30121 -4.43462 -0.34061 0.62659 1.17363 1.21708 2.71423 2.91612 3.26306 3.36497 3.46223 3.57969 3.92232 4.13172 4.34456 4.37857 4.53127 4.59013 4.64273 4.65773 4.84276 4.93478 4.99515 5.04173 5.04944 5.22171 5.33937 5.39225 5.43020 5.46208 5.55671 5.66746 5.77027 5.85888 5.89882 5.98056 5.99712 6.27232 6.38452 6.45888 6.49140 6.60984 6.89740 7.34590 7.46962 7.77828 8.01970 8.28911 8.52768 8.71833 9.30644 10.78736 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.002715 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.555430 B =10310.913206 C =10411.106738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 H 0.110 0.890 4 C 0.526 3.474 5 O -0.543 6.543 6 N -0.606 5.606 7 C 0.097 3.903 8 C -0.148 4.148 9 C 0.219 3.781 10 O -0.565 6.565 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.077 3.923 14 N -0.884 5.884 15 Si 0.939 3.061 16 H -0.288 1.288 17 H -0.320 1.320 18 H -0.268 1.268 19 C 0.113 3.887 20 C -0.058 4.058 21 C -0.031 4.031 22 C -0.118 4.118 23 C -0.057 4.057 24 C -0.048 4.048 25 N 0.031 4.969 26 O -0.162 6.162 27 O -0.165 6.165 28 C -0.048 4.048 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.374 0.626 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 1.108 18.910 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 H 0.128 0.872 4 C 0.313 3.687 5 O -0.421 6.421 6 N -0.339 5.339 7 C -0.026 4.026 8 C -0.187 4.187 9 C 0.179 3.821 10 O -0.373 6.373 11 C -0.593 4.593 12 H 0.100 0.900 13 C -0.129 4.129 14 N -0.518 5.518 15 Si 0.773 3.227 16 H -0.215 1.215 17 H -0.251 1.251 18 H -0.194 1.194 19 C -0.008 4.008 20 C -0.059 4.059 21 C -0.049 4.049 22 C -0.136 4.136 23 C -0.076 4.076 24 C -0.131 4.131 25 N 0.550 4.450 26 O -0.378 6.378 27 O -0.380 6.380 28 C -0.067 4.067 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.222 0.778 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.420 -0.311 18.801 20.603 hybrid contribution -0.245 -0.090 -0.269 0.375 sum -8.665 -0.402 18.533 20.462 Atomic orbital electron populations 1.21976 0.91403 1.03511 1.03834 1.20289 0.98270 1.00508 0.90096 0.87216 1.19858 0.80887 0.84733 0.83260 1.90713 1.38640 1.26695 1.86073 1.48664 1.49925 1.29538 1.05768 1.22539 0.94645 0.87089 0.98326 1.23433 1.01929 0.99774 0.93523 1.20049 0.83059 0.87421 0.91563 1.86143 1.38158 1.50773 1.62266 1.21184 1.20606 1.11986 1.05484 0.90020 1.25140 0.94826 0.98699 0.94266 1.69950 1.38059 1.35702 1.08097 0.85915 0.78496 0.80458 0.77876 1.21476 1.25107 1.19382 1.22766 1.00247 0.97934 0.79863 1.19343 0.97323 0.94408 0.94852 1.21482 0.94967 0.93297 0.95165 1.21191 0.97808 1.00915 0.93704 1.21055 0.95076 0.91200 1.00248 1.21001 1.03682 0.94428 0.93952 1.43623 0.99426 1.00934 1.01010 1.94542 1.61144 1.00437 1.81700 1.94523 1.56080 1.69352 1.18081 1.20877 0.93826 1.01408 0.90633 0.91721 0.91170 0.90182 0.91160 0.91450 0.90157 0.90379 0.77794 0.92238 0.89929 0.91397 0.84124 0.83457 0.83062 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.81 37.15 0.33 -0.90 16 2 C -0.07 -0.74 2.25 -92.92 -0.21 -0.95 16 3 H 0.11 0.97 7.59 -51.93 -0.39 0.58 16 4 C 0.53 8.17 7.09 -10.99 -0.08 8.09 16 5 O -0.54 -10.40 15.46 5.56 0.09 -10.31 16 6 N -0.61 -9.95 3.32 -170.38 -0.57 -10.52 16 7 C 0.10 1.26 5.13 -2.41 -0.01 1.25 16 8 C -0.15 -2.34 6.26 -24.46 -0.15 -2.49 16 9 C 0.22 4.45 0.68 -89.94 -0.06 4.39 16 10 O -0.57 -11.09 8.89 -35.23 -0.31 -11.40 16 11 C -0.56 -13.97 8.71 -34.44 -0.30 -14.27 16 12 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 13 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 14 N -0.88 -25.44 13.96 55.43 0.77 -24.67 16 15 Si 0.94 22.48 24.90 -169.99 -4.23 18.24 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.32 -7.95 7.11 56.52 0.40 -7.55 16 18 H -0.27 -6.41 5.18 56.52 0.29 -6.12 16 19 C 0.11 2.33 5.64 -3.07 -0.02 2.31 16 20 C -0.06 -0.62 4.39 -104.62 -0.46 -1.08 16 21 C -0.03 -0.31 7.94 -39.59 -0.31 -0.62 16 22 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 23 C -0.06 -0.53 9.56 -39.58 -0.38 -0.91 16 24 C -0.05 -0.54 6.85 -79.95 -0.55 -1.09 16 25 N 0.03 0.41 4.45 33.96 0.15 0.57 16 26 O -0.16 -2.27 18.45 -29.46 -0.54 -2.81 16 27 O -0.17 -2.24 18.45 -29.46 -0.54 -2.78 16 28 C -0.05 -0.52 9.18 -39.58 -0.36 -0.88 16 29 H 0.06 0.54 7.37 -51.93 -0.38 0.16 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.64 4.98 -51.92 -0.26 0.39 16 32 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 33 H 0.07 0.68 7.34 -51.93 -0.38 0.30 16 34 H 0.08 1.32 7.99 -51.93 -0.41 0.90 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.37 6.27 9.07 45.56 0.41 6.68 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 1.86 7.82 -51.93 -0.41 1.45 16 39 H 0.07 1.53 6.30 -51.93 -0.33 1.20 16 40 H 0.14 1.36 7.52 -52.48 -0.39 0.97 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.15 1.16 7.61 -52.49 -0.40 0.76 16 43 H 0.15 1.45 7.50 -52.49 -0.39 1.05 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -32.55 354.06 -7.55 -40.11 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.64 Total: 4.84 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.06 Total: -6.60 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.36 Total: -34.62 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.31 Total: -27.31 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.23 Total: 18.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.55 -7.55 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.509 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds