Wall clock time and date at job start Tue Mar 31 2020 18:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47439 * 2 1 4 4 C 1.50704 * 109.47505 * 239.99226 * 2 1 3 5 5 O 1.21276 * 120.00044 * 240.00383 * 4 2 1 6 6 N 1.34771 * 119.99630 * 60.00297 * 4 2 1 7 7 C 1.47429 * 125.64848 * 359.69709 * 6 4 2 8 8 C 1.55125 * 104.72116 * 155.81718 * 7 6 4 9 9 C 1.55160 * 101.48888 * 37.29315 * 8 7 6 10 10 O 1.42895 * 110.72078 * 82.69525 * 9 8 7 11 11 C 1.50700 * 110.87020 * 205.89932 * 9 8 7 12 12 H 1.08006 * 120.00318 * 20.73322 * 11 9 8 13 13 C 1.37877 * 119.99777 * 200.73114 * 11 9 8 14 14 N 1.31517 * 120.00340 * 173.63156 * 13 11 9 15 15 Si 1.86808 * 119.99908 * 353.62863 * 13 11 9 16 16 H 1.48503 * 109.46756 * 86.34118 * 15 13 11 17 17 H 1.48497 * 109.46821 * 206.33727 * 15 13 11 18 18 H 1.48495 * 109.47034 * 326.33790 * 15 13 11 19 19 C 1.47020 * 125.64735 * 179.97438 * 6 4 2 20 20 C 1.50701 * 109.46708 * 119.99522 * 2 1 3 21 21 C 1.38254 * 120.00454 * 59.72860 * 20 2 1 22 22 C 1.38206 * 120.00707 * 179.78990 * 21 20 2 23 23 C 1.38259 * 120.00019 * 0.43534 * 22 21 20 24 24 C 1.38215 * 119.99480 * 359.81729 * 23 22 21 25 25 N 1.48020 * 119.99833 * 179.97438 * 24 23 22 26 26 O 1.21796 * 120.00167 * 179.97438 * 25 24 23 27 27 O 1.21799 * 120.00257 * 359.97143 * 25 24 23 28 28 C 1.38221 * 120.00207 * 239.99834 * 20 2 1 29 29 H 1.08993 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47336 * 300.00839 * 1 2 3 31 31 H 1.09013 * 109.46908 * 60.00289 * 1 2 3 32 32 H 1.09003 * 110.36454 * 274.74009 * 7 6 4 33 33 H 1.08995 * 110.36990 * 37.06414 * 7 6 4 34 34 H 1.08996 * 111.19373 * 279.18763 * 8 7 6 35 35 H 1.09003 * 110.94149 * 155.28763 * 8 7 6 36 36 H 0.96704 * 113.99924 * 61.14735 * 10 9 8 37 37 H 0.96996 * 120.00317 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.88496 * 300.44594 * 19 6 4 39 39 H 1.09005 * 109.88285 * 61.45767 * 19 6 4 40 40 H 1.08007 * 119.99500 * 359.97438 * 21 20 2 41 41 H 1.08002 * 120.00627 * 180.27561 * 22 21 20 42 42 H 1.07998 * 120.00463 * 179.83246 * 23 22 21 43 43 H 1.07999 * 119.99504 * 359.97438 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.7296 -1.6966 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 0.8659 0.9281 -2.7337 8 6 1.2943 1.3912 -4.1509 9 6 1.5391 0.0325 -4.8591 10 8 0.3100 -0.5167 -5.3381 11 6 2.5278 0.1851 -5.9862 12 1 3.2016 1.0290 -6.0030 13 6 2.5721 -0.7527 -6.9960 14 7 3.3446 -0.5566 -8.0421 15 14 1.5349 -2.3019 -6.8781 16 1 0.1790 -2.0321 -7.4204 17 1 2.1753 -3.3872 -7.6636 18 1 1.4259 -2.7176 -5.4567 19 6 2.1268 -0.8432 -3.7325 20 6 2.0322 -0.7103 1.2306 21 6 1.6935 -2.0323 1.4524 22 6 2.1577 -2.6850 2.5787 23 6 2.9533 -2.0134 3.4883 24 6 3.2876 -0.6903 3.2693 25 7 4.1389 0.0290 4.2434 26 8 4.4339 1.1948 4.0502 27 8 4.5444 -0.5450 5.2382 28 6 2.8268 -0.0386 2.1404 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.1886 0.6522 -2.7249 33 1 1.0594 1.7139 -2.0036 34 1 2.2093 1.9822 -4.1125 35 1 0.4929 1.9468 -4.6380 36 1 -0.1414 0.0378 -5.9892 37 1 3.3761 -1.2165 -8.7523 38 1 3.2148 -0.8509 -3.7979 39 1 1.7436 -1.8605 -3.8129 40 1 1.0687 -2.5558 0.7438 41 1 1.8968 -3.7190 2.7497 42 1 3.3138 -2.5227 4.3698 43 1 3.0881 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:10 Heat of formation + Delta-G solvation = -76.965722 kcal Electronic energy + Delta-G solvation = -28878.251687 eV Core-core repulsion = 24698.053286 eV Total energy + Delta-G solvation = -4180.198402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30219 -41.70145 -40.42324 -39.10935 -37.72682 -36.42875 -35.46756 -34.48873 -32.91695 -31.98951 -30.91018 -29.97742 -27.67130 -27.18718 -25.85373 -24.19582 -23.75571 -22.78504 -21.58437 -20.77340 -19.81888 -19.56332 -19.30572 -18.65732 -18.21450 -17.61710 -17.26267 -16.91847 -16.74056 -16.47205 -16.08981 -15.62400 -15.40255 -14.98046 -14.70060 -14.37102 -14.26293 -14.24521 -13.77816 -13.64397 -13.47550 -13.32583 -13.19187 -13.01843 -12.75118 -12.66470 -12.59572 -12.34576 -12.34314 -12.27534 -12.20016 -12.08244 -11.91997 -11.26240 -10.92769 -10.71228 -10.57321 -10.36849 -10.21974 -9.64719 -8.39490 -6.52658 -1.25318 -0.11080 0.28400 0.33020 1.42692 1.46797 1.53867 1.65171 1.90809 2.32860 2.37126 2.94109 3.13130 3.34589 3.45334 3.53880 3.76913 3.80207 3.85017 3.90682 3.91497 4.12193 4.23342 4.25810 4.33985 4.46780 4.57177 4.64985 4.66639 4.78273 4.84257 4.87562 4.94629 4.97343 5.07372 5.13806 5.18289 5.25944 5.28059 5.34197 5.46211 5.51930 6.03565 6.44727 6.54676 6.57993 7.00969 7.06500 7.27980 8.73607 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.002715 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.555430 B =10310.913206 C =10411.106738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 H 0.133 0.867 4 C 0.521 3.479 5 O -0.587 6.587 6 N -0.610 5.610 7 C 0.101 3.899 8 C -0.142 4.142 9 C 0.216 3.784 10 O -0.565 6.565 11 C -0.548 4.548 12 H 0.047 0.953 13 C 0.027 3.973 14 N -0.934 5.934 15 Si 0.994 3.006 16 H -0.268 1.268 17 H -0.336 1.336 18 H -0.270 1.270 19 C 0.120 3.880 20 C -0.069 4.069 21 C -0.037 4.037 22 C -0.110 4.110 23 C -0.054 4.054 24 C -0.065 4.065 25 N 0.032 4.968 26 O -0.187 6.187 27 O -0.174 6.174 28 C -0.052 4.052 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.388 0.612 37 H 0.267 0.733 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.143 0.857 41 H 0.179 0.821 42 H 0.168 0.832 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 1.448 21.000 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 H 0.151 0.849 4 C 0.310 3.690 5 O -0.467 6.467 6 N -0.342 5.342 7 C -0.020 4.020 8 C -0.180 4.180 9 C 0.176 3.824 10 O -0.375 6.375 11 C -0.586 4.586 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.572 5.572 15 Si 0.827 3.173 16 H -0.194 1.194 17 H -0.269 1.269 18 H -0.196 1.196 19 C -0.003 4.003 20 C -0.070 4.070 21 C -0.056 4.056 22 C -0.128 4.128 23 C -0.073 4.073 24 C -0.148 4.148 25 N 0.547 4.453 26 O -0.398 6.398 27 O -0.389 6.389 28 C -0.071 4.071 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.238 0.762 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.161 0.839 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.326 0.101 20.913 23.783 hybrid contribution 0.691 -0.223 -0.898 1.155 sum -10.635 -0.121 20.015 22.665 Atomic orbital electron populations 1.22016 0.89058 1.03879 1.05420 1.20303 0.99984 1.00675 0.86952 0.84898 1.20819 0.79779 0.84286 0.84082 1.90689 1.40469 1.28826 1.86753 1.48693 1.50488 1.30380 1.04642 1.22789 0.95193 0.86716 0.97346 1.23349 1.02644 0.96964 0.95034 1.19864 0.82198 0.90351 0.89994 1.86080 1.37240 1.51423 1.62752 1.21513 1.20487 1.09994 1.06566 0.93453 1.25850 0.96006 1.01250 0.94225 1.70071 1.40744 1.36926 1.09417 0.85004 0.77882 0.77094 0.77311 1.19384 1.26854 1.19575 1.22233 0.98173 0.97142 0.82750 1.19413 0.97776 0.94857 0.94949 1.21707 0.94907 0.93293 0.95648 1.21532 0.96564 1.02130 0.92558 1.21358 0.94557 0.90464 1.00914 1.21208 1.04344 0.95220 0.94040 1.43901 0.99365 1.00853 1.01157 1.94529 1.62114 1.01142 1.82056 1.94501 1.56438 1.69251 1.18704 1.20984 0.93638 1.01950 0.90485 0.92071 0.88669 0.89421 0.88692 0.87276 0.91264 0.87630 0.76165 0.92407 0.93363 0.93730 0.83881 0.80355 0.81431 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.81 71.98 0.63 -1.11 16 2 C -0.06 -1.04 2.25 -12.29 -0.03 -1.06 16 3 H 0.13 1.78 7.59 -2.39 -0.02 1.76 16 4 C 0.52 15.22 7.09 87.66 0.62 15.84 16 5 O -0.59 -22.22 15.46 -3.02 -0.05 -22.27 16 6 N -0.61 -18.79 3.32 -811.36 -2.69 -21.48 16 7 C 0.10 2.20 5.13 86.93 0.45 2.65 16 8 C -0.14 -4.08 6.26 32.06 0.20 -3.88 16 9 C 0.22 8.57 0.68 -10.35 -0.01 8.57 16 10 O -0.57 -20.85 8.89 -148.98 -1.32 -22.18 16 11 C -0.55 -28.14 8.71 25.60 0.22 -27.92 16 12 H 0.05 2.71 7.99 -2.91 -0.02 2.68 16 13 C 0.03 1.49 5.46 84.65 0.46 1.95 16 14 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 15 Si 0.99 46.95 24.90 68.60 1.71 48.66 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.34 -16.66 7.11 99.48 0.71 -15.95 16 18 H -0.27 -12.72 5.18 99.48 0.52 -12.20 16 19 C 0.12 4.95 5.64 86.73 0.49 5.44 16 20 C -0.07 -1.30 4.39 -19.86 -0.09 -1.38 16 21 C -0.04 -0.66 7.94 22.27 0.18 -0.48 16 22 C -0.11 -1.54 10.05 22.27 0.22 -1.32 16 23 C -0.05 -0.89 9.56 22.27 0.21 -0.68 16 24 C -0.07 -1.38 6.85 36.37 0.25 -1.13 16 25 N 0.03 0.83 4.45 -46.46 -0.21 0.63 16 26 O -0.19 -5.16 18.45 18.89 0.35 -4.81 16 27 O -0.17 -4.58 18.45 18.89 0.35 -4.23 16 28 C -0.05 -1.01 9.18 22.27 0.20 -0.80 16 29 H 0.06 0.79 7.37 -2.39 -0.02 0.78 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.93 4.98 -2.38 -0.01 0.92 16 32 H 0.10 1.70 7.08 -2.39 -0.02 1.69 16 33 H 0.11 1.56 7.34 -2.39 -0.02 1.55 16 34 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.39 11.86 9.07 -74.05 -0.67 11.19 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.05 2.27 7.82 -2.39 -0.02 2.25 16 39 H 0.04 2.02 6.30 -2.38 -0.02 2.00 16 40 H 0.14 2.45 7.52 -2.91 -0.02 2.42 16 41 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.17 2.16 7.61 -2.91 -0.02 2.13 16 43 H 0.16 2.74 7.50 -2.91 -0.02 2.72 16 Total: -1.00 -75.14 354.06 2.65 -72.49 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.20 Total: 13.95 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 4.02 Total: -5.32 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.60 Total: -76.28 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.67 Total: -53.49 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.71 Total: 48.66 kcal Total: -75.14 2.65 -72.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.476 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds