Wall clock time and date at job start Tue Mar 31 2020 17:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 N 1.46499 * 109.46945 * 180.02562 * 3 2 1 5 5 C 1.34772 * 120.00282 * 179.97438 * 4 3 2 6 6 O 1.21541 * 119.99533 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00173 * 180.02562 * 5 4 3 8 8 C 1.34774 * 119.99847 * 180.02562 * 7 5 4 9 9 O 1.21237 * 120.00155 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00106 * 180.02562 * 8 7 5 11 11 O 1.45196 * 109.47374 * 179.97438 * 10 8 7 12 12 C 1.34780 * 117.00399 * 180.02562 * 11 10 8 13 13 O 1.21505 * 119.99405 * 0.02562 * 12 11 10 14 14 C 1.47501 * 120.00276 * 179.97438 * 12 11 10 15 15 C 1.40072 * 119.90126 * 179.97438 * 14 12 11 16 16 C 1.36300 * 120.10122 * 180.25903 * 15 14 12 17 17 C 1.40903 * 119.89735 * 359.51953 * 16 15 14 18 18 C 1.41086 * 120.09946 * 180.23584 * 17 16 15 19 19 H 1.08001 * 120.00081 * 204.81479 * 18 17 16 20 20 C 1.40248 * 120.00090 * 24.80544 * 18 17 16 21 21 N 1.30632 * 119.99956 * 17.73033 * 20 18 17 22 22 Si 1.86797 * 120.00167 * 197.73090 * 20 18 17 23 23 H 1.48494 * 109.47173 * 60.00085 * 22 20 18 24 24 H 1.48498 * 109.47155 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47158 * 300.00145 * 22 20 18 26 26 C 1.40902 * 119.79905 * 0.50143 * 17 16 15 27 27 C 1.36295 * 119.90197 * 359.73140 * 26 17 16 28 28 H 1.09003 * 109.46751 * 299.99695 * 1 2 3 29 29 H 1.09002 * 109.47300 * 59.99576 * 1 2 3 30 30 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46578 * 240.00647 * 2 1 3 32 32 H 1.08989 * 109.47230 * 120.00150 * 2 1 3 33 33 H 1.09003 * 109.46731 * 60.00233 * 3 2 1 34 34 H 1.08993 * 109.47540 * 300.00545 * 3 2 1 35 35 H 0.97006 * 119.99642 * 0.02562 * 4 3 2 36 36 H 0.96998 * 120.00244 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.47275 * 59.99849 * 10 8 7 38 38 H 1.09002 * 109.47079 * 299.99841 * 10 8 7 39 39 H 1.08002 * 119.94620 * 359.97438 * 15 14 12 40 40 H 1.07995 * 120.04815 * 179.75273 * 16 15 14 41 41 H 0.97000 * 120.00424 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.04814 * 179.70677 * 26 17 16 43 43 H 1.07997 * 119.95010 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1789 2.6097 -0.0012 6 8 3.5712 3.6622 -0.0008 7 7 5.5266 2.6097 -0.0023 8 6 6.2005 3.7769 -0.0025 9 8 5.5943 4.8268 -0.0020 10 6 7.7075 3.7769 -0.0043 11 8 8.1915 5.1458 -0.0046 12 6 9.5277 5.3225 -0.0067 13 8 10.2678 4.3589 -0.0087 14 6 10.0914 6.6855 -0.0078 15 6 11.4804 6.8667 -0.0095 16 6 12.0057 8.1243 -0.0051 17 6 11.1493 9.2432 -0.0092 18 6 11.6886 10.5470 -0.0098 19 1 11.1094 11.3711 0.3799 20 6 12.9768 10.7728 -0.5162 21 7 13.5399 9.8831 -1.2893 22 14 13.8874 12.3458 -0.0851 23 1 14.0609 12.4296 1.3873 24 1 15.2193 12.3425 -0.7416 25 1 13.1054 13.5161 -0.5587 26 6 9.7528 9.0561 -0.0071 27 6 9.2363 7.7948 -0.0066 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9900 0.6024 -0.0013 36 1 6.0116 1.7697 -0.0023 37 1 8.0698 3.2636 -0.8950 38 1 8.0719 3.2626 0.8850 39 1 12.1360 6.0084 -0.0095 40 1 13.0768 8.2630 -0.0024 41 1 14.4308 10.0394 -1.6399 42 1 9.0927 9.9109 -0.0054 43 1 8.1660 7.6505 -0.0046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758690495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:44 Heat of formation + Delta-G solvation = -138.986744 kcal Electronic energy + Delta-G solvation = -26694.410396 eV Core-core repulsion = 22511.522561 eV Total energy + Delta-G solvation = -4182.887835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35982 -39.76274 -38.57785 -37.42061 -36.15944 -35.58086 -34.82600 -33.97708 -32.86972 -30.42977 -29.68819 -29.00906 -26.78489 -25.99168 -23.05788 -22.22861 -21.94232 -21.05170 -20.72426 -19.93200 -19.13277 -17.66826 -17.56000 -16.78285 -16.74803 -16.17747 -16.14781 -15.73478 -15.39951 -15.35518 -14.97697 -14.20438 -14.14902 -13.96468 -13.44894 -13.40503 -13.04491 -13.01608 -12.58251 -12.56691 -12.46181 -12.21286 -11.88864 -11.67128 -11.43020 -11.41595 -11.26803 -11.08072 -11.02829 -10.70649 -10.42322 -10.33580 -10.16808 -9.83096 -9.58512 -9.52866 -9.51467 -9.39090 -7.75393 -7.64881 -7.10462 -4.68601 1.85171 1.89918 2.01420 2.87449 2.92313 2.95486 3.03302 3.04461 3.12865 3.57908 3.70300 3.74398 4.29235 4.33409 4.44604 4.45101 4.69159 5.02935 5.03612 5.10689 5.11472 5.21848 5.47330 5.51533 5.59316 5.65083 5.77651 5.82445 5.96690 6.15315 6.23229 6.27736 6.73603 6.80852 6.87220 7.04359 7.05712 7.18463 7.41481 7.61413 7.77833 7.82816 7.85702 8.00808 8.09313 8.35053 8.55783 8.61855 8.69388 9.80680 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.039408 B = 0.001662 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.343896 B =16845.732028 C =17449.019042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.133 3.867 4 N -0.740 5.740 5 C 0.695 3.305 6 O -0.527 6.527 7 N -0.690 5.690 8 C 0.516 3.484 9 O -0.438 6.438 10 C 0.054 3.946 11 O -0.338 6.338 12 C 0.517 3.483 13 O -0.551 6.551 14 C -0.276 4.276 15 C -0.031 4.031 16 C -0.185 4.185 17 C 0.132 3.868 18 C -0.432 4.432 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.762 5.762 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.261 1.261 26 C -0.239 4.239 27 C -0.025 4.025 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.410 0.590 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.270 -18.788 1.615 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.009 3.991 4 N -0.398 5.398 5 C 0.395 3.605 6 O -0.398 6.398 7 N -0.358 5.358 8 C 0.301 3.699 9 O -0.303 6.303 10 C -0.024 4.024 11 O -0.255 6.255 12 C 0.370 3.630 13 O -0.445 6.445 14 C -0.279 4.279 15 C -0.050 4.050 16 C -0.204 4.204 17 C 0.128 3.872 18 C -0.459 4.459 19 H 0.106 0.894 20 C -0.150 4.150 21 N -0.385 5.385 22 Si 0.740 3.260 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.258 4.258 27 C -0.044 4.044 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.245 0.755 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.818 -17.405 1.455 22.905 hybrid contribution 1.009 -0.604 0.016 1.176 sum -13.810 -18.009 1.471 22.742 Atomic orbital electron populations 1.21680 0.94303 1.02278 1.02564 1.21739 0.97174 0.95566 1.02824 1.21369 0.77456 0.97316 1.02960 1.45248 1.07750 1.06827 1.79952 1.16066 0.81091 0.84896 0.78497 1.91100 1.66834 1.29766 1.52106 1.44001 1.06911 1.11357 1.73563 1.20478 0.89640 0.83090 0.76727 1.90890 1.69436 1.30082 1.39857 1.22364 0.89445 0.85559 1.05065 1.86698 1.26373 1.26597 1.85818 1.21700 0.78229 0.91103 0.71985 1.90701 1.59884 1.42926 1.50961 1.18147 0.93615 0.87211 1.28907 1.20435 0.92202 0.97055 0.95296 1.20967 1.00015 0.90827 1.08568 1.17865 0.91128 0.93440 0.84721 1.19929 0.98675 0.94848 1.32457 0.89413 1.26174 0.97362 0.99027 0.92445 1.69730 1.14899 1.34400 1.19447 0.86204 0.78521 0.80949 0.80328 1.18330 1.19930 1.18535 1.20738 0.94996 0.95481 1.14618 1.20628 0.97770 0.92340 0.93645 0.92208 0.92198 0.92072 0.91187 0.91188 0.91181 0.91186 0.76749 0.75475 0.88041 0.88050 0.87982 0.85897 0.89873 0.88106 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 37.16 0.37 -0.17 16 2 C -0.14 -0.49 6.05 -26.73 -0.16 -0.65 16 3 C 0.13 0.87 5.67 -4.04 -0.02 0.85 16 4 N -0.74 -5.01 5.56 -65.24 -0.36 -5.38 16 5 C 0.69 8.10 8.50 -86.93 -0.74 7.36 16 6 O -0.53 -9.26 14.74 -18.48 -0.27 -9.53 16 7 N -0.69 -6.55 5.24 -15.78 -0.08 -6.63 16 8 C 0.52 7.33 7.85 -10.99 -0.09 7.24 16 9 O -0.44 -8.78 14.90 -25.37 -0.38 -9.16 16 10 C 0.05 0.73 5.95 36.01 0.21 0.95 16 11 O -0.34 -6.56 8.98 -47.39 -0.43 -6.99 16 12 C 0.52 11.22 7.89 34.51 0.27 11.49 16 13 O -0.55 -12.21 16.11 -19.27 -0.31 -12.52 16 14 C -0.28 -6.55 5.89 -104.75 -0.62 -7.16 16 15 C -0.03 -0.75 9.52 -39.59 -0.38 -1.13 16 16 C -0.18 -4.66 8.63 -39.27 -0.34 -5.00 16 17 C 0.13 3.37 5.57 -106.80 -0.60 2.77 16 18 C -0.43 -10.65 9.04 -37.75 -0.34 -10.99 16 19 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 20 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 21 N -0.76 -18.22 10.95 55.56 0.61 -17.61 16 22 Si 0.92 17.06 29.60 -169.99 -5.03 12.03 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 26 C -0.24 -5.76 9.73 -39.27 -0.38 -6.14 16 27 C -0.03 -0.59 9.55 -39.59 -0.38 -0.97 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.20 8.14 -51.94 -0.42 -0.22 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 1.18 8.49 -40.82 -0.35 0.84 16 36 H 0.41 1.69 8.71 -40.82 -0.36 1.33 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 40 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 41 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.11 2.33 7.59 -52.49 -0.40 1.93 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -35.20 378.42 -9.43 -44.62 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.60 Total: 5.41 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.27 Total: 0.05 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.16 Total: -29.62 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.39 Total: -38.20 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.20 -9.43 -44.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758690495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.363 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds