Wall clock time and date at job start Tue Mar 31 2020 18:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50694 * 109.47447 * 2 1 4 4 O 1.21287 * 120.00064 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00369 * 180.02562 * 3 2 1 6 6 N 1.40099 * 120.00005 * 180.02562 * 5 3 2 7 7 C 1.34780 * 119.99668 * 180.02562 * 6 5 3 8 8 O 1.21275 * 120.00436 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99731 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47414 * 59.99537 * 9 7 6 11 11 C 1.53001 * 109.47289 * 299.99519 * 9 7 6 12 12 O 1.45205 * 109.46992 * 179.97438 * 9 7 6 13 13 C 1.34706 * 116.99665 * 209.99714 * 12 9 7 14 14 O 1.21465 * 120.00555 * 0.02562 * 13 12 9 15 15 C 1.47772 * 119.99597 * 180.02562 * 13 12 9 16 16 C 1.39973 * 120.03245 * 0.24737 * 15 13 12 17 17 C 1.38314 * 120.35347 * 180.28167 * 16 15 13 18 18 C 1.37756 * 120.41765 * 359.44693 * 17 16 15 19 19 C 1.40758 * 120.05170 * 0.30290 * 18 17 16 20 20 C 1.41435 * 120.17584 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00030 * 24.45468 * 20 19 18 22 22 C 1.39939 * 120.00065 * 204.46286 * 20 19 18 23 23 N 1.30829 * 119.99607 * 17.90334 * 22 20 19 24 24 Si 1.86800 * 120.00329 * 197.89940 * 22 20 19 25 25 H 1.48506 * 109.46809 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.46922 * 119.99918 * 24 22 20 27 27 H 1.48494 * 109.47071 * 239.99940 * 24 22 20 28 28 C 1.39054 * 120.03130 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47832 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47446 * 299.99869 * 1 2 3 31 31 H 1.09008 * 109.47208 * 60.00011 * 1 2 3 32 32 H 1.08999 * 109.46984 * 239.99874 * 2 1 3 33 33 H 1.08997 * 109.46877 * 120.00378 * 2 1 3 34 34 H 0.97001 * 119.99829 * 0.02562 * 5 3 2 35 35 H 0.96996 * 120.00245 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.46861 * 60.00031 * 11 9 7 37 37 H 1.09000 * 109.47533 * 179.97438 * 11 9 7 38 38 H 1.08999 * 109.46907 * 300.00328 * 11 9 7 39 39 H 1.08003 * 119.82072 * 0.02562 * 16 15 13 40 40 H 1.07995 * 119.78855 * 179.72792 * 17 16 15 41 41 H 1.08001 * 119.97640 * 180.27609 * 18 17 16 42 42 H 0.96999 * 120.00065 * 180.02562 * 23 22 20 43 43 H 1.07998 * 120.19977 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 7 3.8244 2.9879 0.0000 7 6 5.1495 3.2341 -0.0010 8 8 5.9376 2.3123 -0.0020 9 6 5.6518 4.6549 -0.0010 10 1 5.2892 5.1685 0.8894 11 6 5.1409 5.3765 -1.2497 12 8 7.1039 4.6549 -0.0016 13 6 7.7156 5.6942 0.5983 14 8 7.0544 6.5762 1.1085 15 6 9.1913 5.7615 0.6359 16 6 9.9541 4.7481 0.0437 17 6 11.3357 4.8014 0.0800 18 6 11.9772 5.8574 0.6891 19 6 11.2273 6.8885 1.2855 20 6 11.8832 7.9737 1.9120 21 1 12.8877 8.2401 1.6180 22 6 11.2308 8.7021 2.9130 23 7 10.1862 8.1948 3.5157 24 14 11.8513 10.3986 3.3889 25 1 13.0384 10.7405 2.5648 26 1 10.7806 11.4006 3.1553 27 1 12.2284 10.4028 4.8251 28 6 9.8236 6.8338 1.2555 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 3.9877 0.9297 -0.0013 35 1 3.1941 3.7251 0.0004 36 1 4.0509 5.3765 -1.2488 37 1 5.5038 6.4043 -1.2495 38 1 5.5035 4.8629 -2.1401 39 1 9.4610 3.9181 -0.4405 40 1 11.9152 4.0123 -0.3759 41 1 13.0564 5.8940 0.7094 42 1 9.7337 8.6998 4.2093 43 1 9.2393 7.6196 1.7110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772022166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:02 Heat of formation + Delta-G solvation = -113.018253 kcal Electronic energy + Delta-G solvation = -27545.755197 eV Core-core repulsion = 23363.993440 eV Total energy + Delta-G solvation = -4181.761757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88236 -40.08751 -39.09685 -37.42520 -36.01740 -35.58671 -33.80199 -33.50525 -32.70337 -30.71550 -30.05210 -29.52480 -25.62698 -25.35740 -24.56878 -23.06083 -21.72023 -21.04588 -20.62365 -19.86028 -18.35529 -18.21052 -17.71057 -16.71474 -16.58100 -16.30484 -15.89557 -15.62496 -15.21211 -14.96220 -14.75108 -14.59552 -14.19151 -13.83147 -13.61385 -13.21913 -13.06425 -12.89322 -12.81554 -12.60310 -12.39083 -12.23801 -11.74028 -11.70402 -11.66834 -11.57970 -11.23573 -11.13309 -10.80447 -10.66209 -10.60065 -10.53983 -10.29491 -10.04733 -9.74897 -9.57462 -9.27438 -8.74333 -7.78891 -7.58622 -6.86034 -4.46436 1.31207 1.89308 1.93109 2.36508 2.74511 2.95039 3.05076 3.09132 3.11193 3.49975 3.68200 3.88008 4.07196 4.43390 4.53289 4.59869 4.60059 4.69733 4.86013 5.04089 5.15296 5.33970 5.46259 5.50678 5.51099 5.62810 5.77885 5.91095 6.10614 6.24899 6.30552 6.40881 6.55394 6.79847 6.90250 6.93404 7.10993 7.13875 7.27472 7.49918 7.64992 7.72045 7.87607 7.97676 8.06633 8.39676 8.42104 8.73632 8.75832 10.09390 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002141 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.901703 B =13075.500620 C =13756.736353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.511 3.489 4 O -0.540 6.540 5 N -0.521 5.521 6 N -0.525 5.525 7 C 0.521 3.479 8 O -0.511 6.511 9 C 0.080 3.920 10 H 0.116 0.884 11 C -0.166 4.166 12 O -0.325 6.325 13 C 0.515 3.485 14 O -0.515 6.515 15 C -0.115 4.115 16 C -0.190 4.190 17 C -0.104 4.104 18 C -0.199 4.199 19 C 0.094 3.906 20 C -0.459 4.459 21 H 0.083 0.917 22 C 0.073 3.927 23 N -0.787 5.787 24 Si 0.911 3.089 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.274 1.274 28 C -0.088 4.088 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.433 0.567 35 H 0.433 0.567 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.284 0.716 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 -11.629 -6.435 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.298 3.702 4 O -0.415 6.415 5 N -0.270 5.270 6 N -0.276 5.276 7 C 0.306 3.694 8 O -0.383 6.383 9 C 0.019 3.981 10 H 0.134 0.866 11 C -0.224 4.224 12 O -0.242 6.242 13 C 0.362 3.638 14 O -0.404 6.404 15 C -0.116 4.116 16 C -0.210 4.210 17 C -0.122 4.122 18 C -0.219 4.219 19 C 0.092 3.908 20 C -0.488 4.488 21 H 0.101 0.899 22 C -0.146 4.146 23 N -0.412 5.412 24 Si 0.735 3.265 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.107 4.107 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.275 0.725 35 H 0.275 0.725 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.458 -11.325 -6.085 20.105 hybrid contribution 0.136 0.721 0.436 0.853 sum -15.321 -10.604 -5.649 19.471 Atomic orbital electron populations 1.21555 0.92245 1.02078 1.03648 1.21577 0.98932 0.91696 1.05220 1.21194 0.79943 0.92933 0.76116 1.90743 1.54694 1.46220 1.49888 1.45028 1.07391 0.98253 1.76316 1.44792 1.06857 0.98542 1.77435 1.20572 0.80435 0.91752 0.76658 1.90770 1.54406 1.45400 1.47694 1.22058 0.81761 0.91605 1.02652 0.86629 1.22210 1.01494 1.02257 0.96439 1.86767 1.18270 1.47236 1.71905 1.22047 0.90218 0.78093 0.73430 1.90761 1.66697 1.38618 1.44298 1.18768 0.85770 1.00000 1.07076 1.20626 0.93676 0.99808 1.06881 1.20523 0.93809 0.97818 1.00050 1.21204 0.98240 0.95588 1.06841 1.17543 0.90982 0.91731 0.90575 1.19595 1.01629 1.11186 1.16400 0.89869 1.25972 0.94163 0.99529 0.94936 1.69786 1.16809 1.36696 1.17870 0.86217 0.79964 0.81503 0.78845 1.18283 1.19560 1.19911 1.21655 0.95022 0.96481 0.97582 0.91540 0.91737 0.91764 0.88165 0.88147 0.72489 0.72469 0.90435 0.89816 0.90650 0.87611 0.88433 0.88273 0.90463 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.20 37.15 0.34 -0.39 16 2 C -0.13 -0.63 6.42 -27.89 -0.18 -0.81 16 3 C 0.51 4.46 7.95 -10.99 -0.09 4.37 16 4 O -0.54 -6.55 15.82 5.55 0.09 -6.46 16 5 N -0.52 -4.77 6.26 31.22 0.20 -4.58 16 6 N -0.53 -5.62 6.15 31.22 0.19 -5.43 16 7 C 0.52 7.12 7.35 -10.98 -0.08 7.04 16 8 O -0.51 -8.68 16.34 -14.10 -0.23 -8.91 16 9 C 0.08 1.15 2.99 -27.88 -0.08 1.07 16 10 H 0.12 1.62 7.16 -51.93 -0.37 1.25 16 11 C -0.17 -1.87 9.45 37.16 0.35 -1.52 16 12 O -0.33 -6.18 8.65 -47.19 -0.41 -6.58 16 13 C 0.51 11.30 7.87 34.63 0.27 11.58 16 14 O -0.51 -11.87 15.59 -19.24 -0.30 -12.17 16 15 C -0.11 -2.75 5.87 -105.05 -0.62 -3.37 16 16 C -0.19 -4.25 9.62 -38.90 -0.37 -4.62 16 17 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 18 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 19 C 0.09 2.45 5.57 -106.87 -0.60 1.85 16 20 C -0.46 -11.80 9.05 -37.73 -0.34 -12.14 16 21 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 22 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 23 N -0.79 -20.38 10.96 55.55 0.61 -19.77 16 24 Si 0.91 18.38 29.60 -169.99 -5.03 13.34 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 28 C -0.09 -2.30 8.24 -38.43 -0.32 -2.62 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.43 3.43 8.00 -182.60 -1.46 1.97 16 35 H 0.43 4.06 7.42 -182.60 -1.35 2.70 16 36 H 0.08 0.62 7.56 -51.93 -0.39 0.23 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.11 2.19 7.59 -52.48 -0.40 1.80 16 40 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 43 H 0.14 3.77 5.74 -52.49 -0.30 3.47 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -32.74 377.89 -9.40 -42.14 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.63 Total: 8.27 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.58 Total: -5.55 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 1.00 Total: -29.77 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.85 Total: -34.13 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.74 -9.40 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772022166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.879 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds