Wall clock time and date at job start Tue Mar 31 2020 18:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50694 * 109.47447 * 2 1 4 4 O 1.21287 * 120.00064 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00369 * 180.02562 * 3 2 1 6 6 N 1.40099 * 120.00005 * 180.02562 * 5 3 2 7 7 C 1.34780 * 119.99668 * 180.02562 * 6 5 3 8 8 O 1.21275 * 120.00436 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99731 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47414 * 59.99537 * 9 7 6 11 11 C 1.53001 * 109.47289 * 299.99519 * 9 7 6 12 12 O 1.45205 * 109.46992 * 179.97438 * 9 7 6 13 13 C 1.34706 * 116.99665 * 209.99714 * 12 9 7 14 14 O 1.21465 * 120.00555 * 0.02562 * 13 12 9 15 15 C 1.47772 * 119.99597 * 180.02562 * 13 12 9 16 16 C 1.39973 * 120.03245 * 0.24737 * 15 13 12 17 17 C 1.38314 * 120.35347 * 180.28167 * 16 15 13 18 18 C 1.37756 * 120.41765 * 359.44693 * 17 16 15 19 19 C 1.40758 * 120.05170 * 0.30290 * 18 17 16 20 20 C 1.41435 * 120.17584 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00030 * 24.45468 * 20 19 18 22 22 C 1.39939 * 120.00065 * 204.46286 * 20 19 18 23 23 N 1.30829 * 119.99607 * 17.90334 * 22 20 19 24 24 Si 1.86800 * 120.00329 * 197.89940 * 22 20 19 25 25 H 1.48506 * 109.46809 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.46922 * 119.99918 * 24 22 20 27 27 H 1.48494 * 109.47071 * 239.99940 * 24 22 20 28 28 C 1.39054 * 120.03130 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47832 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47446 * 299.99869 * 1 2 3 31 31 H 1.09008 * 109.47208 * 60.00011 * 1 2 3 32 32 H 1.08999 * 109.46984 * 239.99874 * 2 1 3 33 33 H 1.08997 * 109.46877 * 120.00378 * 2 1 3 34 34 H 0.97001 * 119.99829 * 0.02562 * 5 3 2 35 35 H 0.96996 * 120.00245 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.46861 * 60.00031 * 11 9 7 37 37 H 1.09000 * 109.47533 * 179.97438 * 11 9 7 38 38 H 1.08999 * 109.46907 * 300.00328 * 11 9 7 39 39 H 1.08003 * 119.82072 * 0.02562 * 16 15 13 40 40 H 1.07995 * 119.78855 * 179.72792 * 17 16 15 41 41 H 1.08001 * 119.97640 * 180.27609 * 18 17 16 42 42 H 0.96999 * 120.00065 * 180.02562 * 23 22 20 43 43 H 1.07998 * 120.19977 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 7 3.8244 2.9879 0.0000 7 6 5.1495 3.2341 -0.0010 8 8 5.9376 2.3123 -0.0020 9 6 5.6518 4.6549 -0.0010 10 1 5.2892 5.1685 0.8894 11 6 5.1409 5.3765 -1.2497 12 8 7.1039 4.6549 -0.0016 13 6 7.7156 5.6942 0.5983 14 8 7.0544 6.5762 1.1085 15 6 9.1913 5.7615 0.6359 16 6 9.9541 4.7481 0.0437 17 6 11.3357 4.8014 0.0800 18 6 11.9772 5.8574 0.6891 19 6 11.2273 6.8885 1.2855 20 6 11.8832 7.9737 1.9120 21 1 12.8877 8.2401 1.6180 22 6 11.2308 8.7021 2.9130 23 7 10.1862 8.1948 3.5157 24 14 11.8513 10.3986 3.3889 25 1 13.0384 10.7405 2.5648 26 1 10.7806 11.4006 3.1553 27 1 12.2284 10.4028 4.8251 28 6 9.8236 6.8338 1.2555 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 3.9877 0.9297 -0.0013 35 1 3.1941 3.7251 0.0004 36 1 4.0509 5.3765 -1.2488 37 1 5.5038 6.4043 -1.2495 38 1 5.5035 4.8629 -2.1401 39 1 9.4610 3.9181 -0.4405 40 1 11.9152 4.0123 -0.3759 41 1 13.0564 5.8940 0.7094 42 1 9.7337 8.6998 4.2093 43 1 9.2393 7.6196 1.7110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772022166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:01 Heat of formation + Delta-G solvation = -133.257377 kcal Electronic energy + Delta-G solvation = -27546.632831 eV Core-core repulsion = 23363.993440 eV Total energy + Delta-G solvation = -4182.639391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05205 -41.32628 -40.22503 -39.18628 -37.55353 -36.59773 -35.64043 -34.24041 -33.62202 -32.20359 -31.41910 -31.21600 -27.34508 -26.48108 -25.54490 -24.44110 -22.88996 -22.61975 -21.76533 -21.29520 -19.81114 -19.26237 -18.84941 -18.25028 -17.83602 -17.33075 -17.18643 -16.87761 -16.65932 -16.48023 -16.17126 -15.71389 -15.29166 -15.22298 -14.86579 -14.56081 -14.43198 -14.27538 -14.11706 -13.59677 -13.43901 -13.27006 -13.05809 -12.85655 -12.78930 -12.67166 -12.60609 -12.58361 -12.22423 -12.08660 -12.04115 -12.03965 -11.56445 -11.48251 -11.37917 -11.10381 -11.08145 -9.64572 -9.63011 -9.46373 -8.69678 -6.40305 0.07149 0.40138 0.94816 0.98831 1.38611 1.44530 1.52196 1.54779 1.60680 1.74606 2.19312 2.70254 2.72856 3.25493 3.58816 3.62227 3.69028 3.77259 3.82696 4.18125 4.26446 4.38266 4.49099 4.53585 4.61593 4.69881 4.81615 4.97418 5.00725 5.03534 5.06092 5.10118 5.12310 5.26982 5.31818 5.40972 5.42659 5.52413 5.79155 5.87982 5.99698 6.20834 6.28034 6.51515 6.62505 6.71337 6.85045 6.87039 7.13032 8.28133 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002141 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.901703 B =13075.500620 C =13756.736353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.511 3.489 4 O -0.577 6.577 5 N -0.519 5.519 6 N -0.514 5.514 7 C 0.529 3.471 8 O -0.547 6.547 9 C 0.070 3.930 10 H 0.118 0.882 11 C -0.161 4.161 12 O -0.329 6.329 13 C 0.520 3.480 14 O -0.534 6.534 15 C -0.128 4.128 16 C -0.183 4.183 17 C -0.099 4.099 18 C -0.202 4.202 19 C 0.065 3.935 20 C -0.491 4.491 21 H 0.088 0.912 22 C 0.030 3.970 23 N -0.825 5.825 24 Si 0.984 3.016 25 H -0.251 1.251 26 H -0.269 1.269 27 H -0.266 1.266 28 C -0.119 4.119 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.440 0.560 35 H 0.440 0.560 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.288 0.712 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 -13.177 -7.370 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.300 3.700 4 O -0.454 6.454 5 N -0.269 5.269 6 N -0.263 5.263 7 C 0.314 3.686 8 O -0.422 6.422 9 C 0.010 3.990 10 H 0.135 0.865 11 C -0.218 4.218 12 O -0.245 6.245 13 C 0.368 3.632 14 O -0.425 6.425 15 C -0.129 4.129 16 C -0.202 4.202 17 C -0.117 4.117 18 C -0.222 4.222 19 C 0.063 3.937 20 C -0.520 4.520 21 H 0.106 0.894 22 C -0.185 4.185 23 N -0.451 5.451 24 Si 0.805 3.195 25 H -0.174 1.174 26 H -0.194 1.194 27 H -0.190 1.190 28 C -0.139 4.139 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.283 0.717 35 H 0.284 0.716 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.861 -12.906 -7.041 21.627 hybrid contribution 0.109 1.016 0.644 1.208 sum -15.752 -11.890 -6.397 20.746 Atomic orbital electron populations 1.21579 0.92712 1.03153 1.02187 1.21710 0.98311 0.89013 1.07639 1.22066 0.79137 0.94220 0.74583 1.90733 1.55454 1.47702 1.51527 1.45294 1.07876 0.97383 1.76337 1.44591 1.06006 1.00010 1.75711 1.20259 0.81065 0.90803 0.76470 1.90754 1.55459 1.46104 1.49895 1.22480 0.79142 0.92956 1.04430 0.86484 1.22233 1.03652 1.01015 0.94884 1.86687 1.21218 1.45701 1.70898 1.21697 0.89745 0.78439 0.73326 1.90738 1.67065 1.39530 1.45168 1.19025 0.87372 0.99843 1.06698 1.20936 0.94170 0.99430 1.05669 1.20944 0.93823 0.98040 0.98880 1.21503 0.99170 0.95356 1.06121 1.17915 0.91350 0.92940 0.91507 1.19881 1.02264 1.12417 1.17444 0.89381 1.26867 0.94080 1.03105 0.94435 1.69871 1.18240 1.38333 1.18653 0.85121 0.79448 0.76197 0.78771 1.17405 1.19395 1.19049 1.21470 0.95301 0.97254 0.99863 0.89153 0.93353 0.93126 0.85457 0.85750 0.71657 0.71593 0.86865 0.90950 0.90105 0.85645 0.84318 0.86547 0.90087 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 71.98 0.66 -0.55 16 2 C -0.13 -0.85 6.42 29.84 0.19 -0.66 16 3 C 0.51 8.01 7.95 87.66 0.70 8.71 16 4 O -0.58 -13.43 15.82 -3.05 -0.05 -13.48 16 5 N -0.52 -8.59 6.26 -173.53 -1.09 -9.68 16 6 N -0.51 -10.28 6.15 -173.54 -1.07 -11.34 16 7 C 0.53 13.95 7.35 87.66 0.64 14.60 16 8 O -0.55 -18.13 16.34 15.79 0.26 -17.88 16 9 C 0.07 1.97 2.99 29.85 0.09 2.06 16 10 H 0.12 3.29 7.16 -2.39 -0.02 3.27 16 11 C -0.16 -3.41 9.45 71.98 0.68 -2.73 16 12 O -0.33 -12.46 8.65 -49.77 -0.43 -12.89 16 13 C 0.52 23.32 7.87 70.34 0.55 23.88 16 14 O -0.53 -25.49 15.59 19.95 0.31 -25.18 16 15 C -0.13 -6.26 5.87 -20.14 -0.12 -6.38 16 16 C -0.18 -7.96 9.62 22.71 0.22 -7.75 16 17 C -0.10 -4.10 10.01 22.17 0.22 -3.88 16 18 C -0.20 -9.37 9.78 22.77 0.22 -9.15 16 19 C 0.07 3.47 5.57 -21.32 -0.12 3.36 16 20 C -0.49 -25.92 9.05 23.47 0.21 -25.71 16 21 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 22 C 0.03 1.53 5.14 85.25 0.44 1.97 16 23 N -0.83 -44.50 10.96 21.83 0.24 -44.26 16 24 Si 0.98 38.28 29.60 68.60 2.03 40.31 16 25 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 28 C -0.12 -6.49 8.24 23.02 0.19 -6.30 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.05 0.58 8.10 -2.38 -0.02 0.56 16 32 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.44 6.11 8.00 -213.32 -1.71 4.41 16 35 H 0.44 7.60 7.42 -213.33 -1.58 6.02 16 36 H 0.11 1.57 7.56 -2.39 -0.02 1.55 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.13 4.95 7.59 -2.91 -0.02 4.93 16 40 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 41 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 42 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 43 H 0.11 6.47 5.74 -2.91 -0.02 6.46 16 Total: -1.00 -73.86 377.89 2.77 -71.08 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -2.22 Total: 31.83 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.78 Total: -8.52 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -1.91 Total: -65.28 kcal Atomic # 8 Polarization: -69.51 SS G_CDS: 0.09 Total: -69.42 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -73.86 2.77 -71.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772022166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.174 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds