Wall clock time and date at job start Tue Mar 31 2020 18:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99407 * 2 1 4 4 C 1.54321 * 109.88263 * 121.09375 * 2 1 3 5 5 C 1.55160 * 102.94087 * 141.61254 * 4 2 1 6 6 H 1.08991 * 111.00517 * 206.42414 * 5 4 2 7 7 O 1.42904 * 111.00340 * 82.60790 * 5 4 2 8 8 C 1.54910 * 101.58198 * 324.49814 * 5 4 2 9 9 N 1.47024 * 109.88341 * 238.90822 * 2 1 3 10 10 C 1.34777 * 125.65111 * 61.59006 * 9 2 1 11 11 O 1.21362 * 119.99806 * 0.02562 * 10 9 2 12 12 C 1.49349 * 120.00005 * 180.02562 * 10 9 2 13 13 O 1.21376 * 120.00218 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00000 * 180.02562 * 12 10 9 15 15 C 1.39721 * 120.00020 * 175.49644 * 14 12 10 16 16 C 1.39022 * 120.04255 * 214.86137 * 15 14 12 17 17 C 1.38135 * 120.06464 * 179.74805 * 16 15 14 18 18 C 1.38191 * 120.14235 * 0.54537 * 17 16 15 19 19 C 1.38922 * 120.08045 * 359.70422 * 18 17 16 20 20 O 1.35742 * 120.02749 * 179.97438 * 19 18 17 21 21 C 1.34836 * 117.00343 * 5.36841 * 20 19 18 22 22 H 1.07998 * 119.99602 * 354.96102 * 21 20 19 23 23 C 1.38651 * 120.00071 * 174.96266 * 21 20 19 24 24 N 1.31565 * 120.00179 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00039 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46757 * 60.00364 * 25 23 21 27 27 H 1.48494 * 109.47112 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47220 * 300.00256 * 25 23 21 29 29 C 1.38754 * 119.93623 * 0.02562 * 19 18 17 30 30 H 1.09000 * 109.47181 * 298.90221 * 1 2 3 31 31 H 1.08999 * 109.47505 * 58.90484 * 1 2 3 32 32 H 1.09003 * 109.47257 * 178.90505 * 1 2 3 33 33 H 1.09001 * 110.72229 * 259.97573 * 4 2 1 34 34 H 1.08993 * 110.72173 * 23.07305 * 4 2 1 35 35 H 0.96700 * 113.99779 * 179.97438 * 7 5 4 36 36 H 1.09005 * 110.36730 * 155.84401 * 8 5 4 37 37 H 1.08991 * 110.36894 * 278.06193 * 8 5 4 38 38 H 0.97004 * 119.99802 * 355.48761 * 14 12 10 39 39 H 1.08003 * 119.96496 * 359.97438 * 16 15 14 40 40 H 1.08003 * 119.93290 * 180.27346 * 17 16 15 41 41 H 1.08001 * 119.95604 * 179.72850 * 18 17 16 42 42 H 0.96991 * 120.00095 * 180.02562 * 24 23 21 43 43 H 1.08002 * 120.06755 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2876 -1.5142 0.6924 6 1 3.4853 -2.4109 1.2795 7 8 4.4386 -0.6682 0.6512 8 6 2.8146 -1.8794 -0.7368 9 7 2.0300 -0.7140 -1.1840 10 6 1.8072 -0.3621 -2.4658 11 8 1.1427 0.6216 -2.7182 12 6 2.3780 -1.1826 -3.5755 13 8 3.0430 -2.1662 -3.3230 14 7 2.1556 -0.8305 -4.8572 15 6 2.7662 -1.5418 -5.8932 16 6 3.1716 -0.8807 -7.0470 17 6 3.7801 -1.5826 -8.0693 18 6 3.9776 -2.9454 -7.9536 19 6 3.5702 -3.6131 -6.8055 20 8 3.7643 -4.9518 -6.6932 21 6 4.4565 -5.5551 -7.6806 22 1 4.7579 -4.9912 -8.5511 23 6 4.7813 -6.8991 -7.5786 24 7 4.4136 -7.5861 -6.5184 25 14 5.7396 -7.7350 -8.9469 26 1 7.0519 -7.0606 -9.1154 27 1 5.9570 -9.1620 -8.5986 28 1 4.9713 -7.6468 -10.2146 29 6 2.9637 -2.9103 -5.7742 30 1 -0.3633 0.4967 0.8997 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 2.3529 -0.0459 2.0201 34 1 1.3040 -1.4436 1.6201 35 1 5.2342 -1.1026 0.3143 36 1 3.6717 -2.0337 -1.3923 37 1 2.1903 -2.7725 -0.7131 38 1 1.5715 -0.0831 -5.0605 39 1 3.0140 0.1835 -7.1425 40 1 4.0981 -1.0661 -8.9629 41 1 4.4497 -3.4920 -8.7566 42 1 4.6412 -8.5262 -6.4469 43 1 2.6465 -3.4271 -4.8805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788340996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:24 Heat of formation + Delta-G solvation = -97.934680 kcal Electronic energy + Delta-G solvation = -28522.578366 eV Core-core repulsion = 24341.470682 eV Total energy + Delta-G solvation = -4181.107684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.11387 -39.77521 -38.67995 -38.01409 -36.63742 -35.80135 -34.20412 -32.28472 -32.06935 -30.47331 -29.66723 -28.66355 -26.29897 -25.56475 -25.05705 -22.78784 -21.98399 -21.41234 -20.78201 -19.58616 -18.42322 -18.16127 -17.56194 -17.06294 -16.83077 -16.15459 -15.64322 -15.13158 -15.07009 -14.94843 -14.65459 -14.31686 -14.21337 -14.12266 -13.91057 -13.62501 -13.49708 -12.90829 -12.89099 -12.59478 -12.47152 -12.41558 -11.94725 -11.79459 -11.65086 -11.59557 -11.34365 -11.07370 -11.04571 -11.02957 -10.77967 -10.50872 -10.47678 -9.86543 -9.56786 -9.16439 -8.94974 -8.84474 -7.80464 -7.24504 -6.45444 -4.04749 1.27686 2.05457 2.26301 2.31332 3.12554 3.13333 3.16625 3.23351 3.38937 3.76462 3.95609 4.13388 4.21626 4.41876 4.54219 4.57537 4.87740 5.03448 5.08711 5.10888 5.26956 5.28342 5.37760 5.44787 5.56368 5.57932 5.63711 5.76171 5.79184 5.91078 6.02691 6.06262 6.14525 6.30106 6.55030 6.70981 6.95551 7.00261 7.04634 7.29728 7.31354 7.36969 7.42470 7.65869 7.75228 7.98904 8.07544 8.99434 9.69361 10.72243 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.002801 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.588545 B = 9994.637314 C =11228.371949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 H 0.083 0.917 4 C -0.121 4.121 5 C 0.086 3.914 6 H 0.085 0.915 7 O -0.558 6.558 8 C 0.063 3.937 9 N -0.581 5.581 10 C 0.527 3.473 11 O -0.523 6.523 12 C 0.502 3.498 13 O -0.488 6.488 14 N -0.637 5.637 15 C 0.168 3.832 16 C -0.229 4.229 17 C -0.058 4.058 18 C -0.242 4.242 19 C 0.166 3.834 20 O -0.173 6.173 21 C -0.393 4.393 22 H 0.093 0.907 23 C 0.040 3.960 24 N -0.861 5.861 25 Si 0.941 3.059 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.270 1.270 29 C -0.185 4.185 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.385 0.615 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.271 0.729 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 12.929 12.673 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 H 0.101 0.899 4 C -0.159 4.159 5 C 0.026 3.974 6 H 0.102 0.898 7 O -0.365 6.365 8 C -0.060 4.060 9 N -0.315 5.315 10 C 0.310 3.690 11 O -0.399 6.399 12 C 0.283 3.717 13 O -0.362 6.362 14 N -0.283 5.283 15 C 0.075 3.925 16 C -0.250 4.250 17 C -0.076 4.076 18 C -0.261 4.261 19 C 0.111 3.889 20 O -0.075 6.075 21 C -0.469 4.469 22 H 0.110 0.890 23 C -0.165 4.165 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.195 1.195 29 C -0.206 4.206 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.233 0.767 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.498 12.795 13.191 18.920 hybrid contribution 0.599 -0.471 -1.105 1.342 sum -3.899 12.324 12.086 17.696 Atomic orbital electron populations 1.22184 0.94245 1.02677 1.03269 1.21663 0.94653 0.96827 0.83486 0.89887 1.22818 0.95836 1.00317 0.96942 1.22994 0.86524 0.93350 0.94525 0.89774 1.86473 1.20272 1.41690 1.88052 1.23471 0.97797 0.88269 0.96451 1.48203 1.50836 1.28257 1.04201 1.19720 0.81378 0.85188 0.82698 1.90738 1.39098 1.26868 1.83197 1.20041 0.81934 0.85682 0.84003 1.90793 1.37166 1.25160 1.83058 1.42996 1.47119 1.34205 1.03962 1.17178 0.97530 0.90172 0.87573 1.20313 1.10180 0.98859 0.95655 1.20523 0.96408 0.93603 0.97109 1.21224 1.09938 0.94899 1.00067 1.19093 0.92471 0.85119 0.92190 1.83983 1.63911 1.14197 1.45456 1.21304 1.33584 0.93431 0.98562 0.89000 1.25298 0.97438 0.95572 0.98152 1.70039 1.43118 1.09109 1.27239 0.85777 0.79593 0.78351 0.79683 1.19466 1.20280 1.19480 1.20136 1.08668 0.91526 1.00271 0.91295 0.90967 0.92204 0.88879 0.88777 0.76683 0.87321 0.89695 0.74544 0.87073 0.86807 0.85313 0.91945 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.09 37.16 0.34 -1.14 16 2 C 0.14 1.34 3.46 -66.95 -0.23 1.11 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -0.88 6.21 -24.90 -0.15 -1.03 16 5 C 0.09 0.70 4.43 -24.58 -0.11 0.59 16 6 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 7 O -0.56 -5.15 13.47 -35.23 -0.47 -5.63 16 8 C 0.06 0.68 5.80 -2.53 -0.01 0.66 16 9 N -0.58 -7.10 3.07 -163.56 -0.50 -7.60 16 10 C 0.53 7.67 7.70 -11.63 -0.09 7.58 16 11 O -0.52 -8.12 15.53 5.49 0.09 -8.03 16 12 C 0.50 8.18 7.69 -11.63 -0.09 8.09 16 13 O -0.49 -9.05 11.21 5.47 0.06 -8.99 16 14 N -0.64 -10.09 5.32 -10.31 -0.05 -10.14 16 15 C 0.17 3.16 6.29 -83.77 -0.53 2.63 16 16 C -0.23 -3.94 9.96 -39.33 -0.39 -4.33 16 17 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 18 C -0.24 -5.21 9.17 -39.35 -0.36 -5.57 16 19 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 20 O -0.17 -4.98 9.75 0.06 0.00 -4.98 16 21 C -0.39 -10.95 9.49 30.88 0.29 -10.66 16 22 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 23 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 24 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 25 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 29 C -0.18 -4.14 8.64 -39.19 -0.34 -4.48 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 35 H 0.38 2.33 9.12 45.56 0.42 2.75 16 36 H 0.11 1.37 6.16 -51.93 -0.32 1.05 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.42 5.53 8.30 -40.82 -0.34 5.20 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 41 H 0.13 2.74 5.63 -52.49 -0.30 2.44 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.13 3.14 6.23 -52.49 -0.33 2.82 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -34.06 361.66 -6.55 -40.61 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.42 Total: 11.58 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.43 Total: -3.17 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.20 Total: -42.21 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.33 Total: -27.62 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.06 -6.55 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788340996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.324 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds