Wall clock time and date at job start Tue Mar 31 2020 18:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99407 * 2 1 4 4 C 1.54321 * 109.88263 * 121.09375 * 2 1 3 5 5 C 1.55160 * 102.94087 * 141.61254 * 4 2 1 6 6 H 1.08991 * 111.00517 * 206.42414 * 5 4 2 7 7 O 1.42904 * 111.00340 * 82.60790 * 5 4 2 8 8 C 1.54910 * 101.58198 * 324.49814 * 5 4 2 9 9 N 1.47024 * 109.88341 * 238.90822 * 2 1 3 10 10 C 1.34777 * 125.65111 * 61.59006 * 9 2 1 11 11 O 1.21362 * 119.99806 * 0.02562 * 10 9 2 12 12 C 1.49349 * 120.00005 * 180.02562 * 10 9 2 13 13 O 1.21376 * 120.00218 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00000 * 180.02562 * 12 10 9 15 15 C 1.39721 * 120.00020 * 175.49644 * 14 12 10 16 16 C 1.39022 * 120.04255 * 214.86137 * 15 14 12 17 17 C 1.38135 * 120.06464 * 179.74805 * 16 15 14 18 18 C 1.38191 * 120.14235 * 0.54537 * 17 16 15 19 19 C 1.38922 * 120.08045 * 359.70422 * 18 17 16 20 20 O 1.35742 * 120.02749 * 179.97438 * 19 18 17 21 21 C 1.34836 * 117.00343 * 5.36841 * 20 19 18 22 22 H 1.07998 * 119.99602 * 354.96102 * 21 20 19 23 23 C 1.38651 * 120.00071 * 174.96266 * 21 20 19 24 24 N 1.31565 * 120.00179 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00039 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46757 * 60.00364 * 25 23 21 27 27 H 1.48494 * 109.47112 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47220 * 300.00256 * 25 23 21 29 29 C 1.38754 * 119.93623 * 0.02562 * 19 18 17 30 30 H 1.09000 * 109.47181 * 298.90221 * 1 2 3 31 31 H 1.08999 * 109.47505 * 58.90484 * 1 2 3 32 32 H 1.09003 * 109.47257 * 178.90505 * 1 2 3 33 33 H 1.09001 * 110.72229 * 259.97573 * 4 2 1 34 34 H 1.08993 * 110.72173 * 23.07305 * 4 2 1 35 35 H 0.96700 * 113.99779 * 179.97438 * 7 5 4 36 36 H 1.09005 * 110.36730 * 155.84401 * 8 5 4 37 37 H 1.08991 * 110.36894 * 278.06193 * 8 5 4 38 38 H 0.97004 * 119.99802 * 355.48761 * 14 12 10 39 39 H 1.08003 * 119.96496 * 359.97438 * 16 15 14 40 40 H 1.08003 * 119.93290 * 180.27346 * 17 16 15 41 41 H 1.08001 * 119.95604 * 179.72850 * 18 17 16 42 42 H 0.96991 * 120.00095 * 180.02562 * 24 23 21 43 43 H 1.08002 * 120.06755 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2876 -1.5142 0.6924 6 1 3.4853 -2.4109 1.2795 7 8 4.4386 -0.6682 0.6512 8 6 2.8146 -1.8794 -0.7368 9 7 2.0300 -0.7140 -1.1840 10 6 1.8072 -0.3621 -2.4658 11 8 1.1427 0.6216 -2.7182 12 6 2.3780 -1.1826 -3.5755 13 8 3.0430 -2.1662 -3.3230 14 7 2.1556 -0.8305 -4.8572 15 6 2.7662 -1.5418 -5.8932 16 6 3.1716 -0.8807 -7.0470 17 6 3.7801 -1.5826 -8.0693 18 6 3.9776 -2.9454 -7.9536 19 6 3.5702 -3.6131 -6.8055 20 8 3.7643 -4.9518 -6.6932 21 6 4.4565 -5.5551 -7.6806 22 1 4.7579 -4.9912 -8.5511 23 6 4.7813 -6.8991 -7.5786 24 7 4.4136 -7.5861 -6.5184 25 14 5.7396 -7.7350 -8.9469 26 1 7.0519 -7.0606 -9.1154 27 1 5.9570 -9.1620 -8.5986 28 1 4.9713 -7.6468 -10.2146 29 6 2.9637 -2.9103 -5.7742 30 1 -0.3633 0.4967 0.8997 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 2.3529 -0.0459 2.0201 34 1 1.3040 -1.4436 1.6201 35 1 5.2342 -1.1026 0.3143 36 1 3.6717 -2.0337 -1.3923 37 1 2.1903 -2.7725 -0.7131 38 1 1.5715 -0.0831 -5.0605 39 1 3.0140 0.1835 -7.1425 40 1 4.0981 -1.0661 -8.9629 41 1 4.4497 -3.4920 -8.7566 42 1 4.6412 -8.5262 -6.4469 43 1 2.6465 -3.4271 -4.8805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788340996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:23 Heat of formation + Delta-G solvation = -124.922308 kcal Electronic energy + Delta-G solvation = -28523.748637 eV Core-core repulsion = 24341.470682 eV Total energy + Delta-G solvation = -4182.277955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.32552 -41.07336 -40.19279 -39.12522 -38.29251 -36.63229 -35.66308 -34.26403 -32.96376 -31.31781 -31.24225 -30.27722 -27.43938 -27.09126 -26.39288 -24.08424 -23.32353 -22.67121 -21.93226 -20.74268 -20.03028 -19.34753 -18.86059 -18.43079 -18.00609 -17.28947 -17.10356 -16.79319 -16.44246 -16.14691 -15.91297 -15.68030 -15.50586 -15.38052 -15.02786 -14.88152 -14.81728 -14.41551 -14.28039 -13.61560 -13.56372 -13.40915 -13.26523 -13.21018 -13.04108 -12.75213 -12.67451 -12.41915 -12.34136 -12.16218 -12.13679 -11.75102 -11.42678 -11.33624 -11.17932 -10.77028 -10.53798 -9.93339 -9.43457 -8.95593 -8.46269 -6.15733 -0.06102 0.58046 0.67656 1.05617 1.36092 1.47221 1.52774 1.95598 2.16150 2.27814 2.79810 3.02174 3.14920 3.19322 3.40297 3.52767 3.62822 3.90317 4.09897 4.12956 4.25939 4.32777 4.35815 4.43475 4.55108 4.62719 4.66066 4.67918 4.75893 4.82671 4.90712 4.95414 5.05511 5.10150 5.14303 5.26543 5.31315 5.34444 5.59635 5.69653 5.89175 6.02138 6.06921 6.12309 6.53164 6.75927 6.78371 6.97446 7.77785 8.76846 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.002801 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.588545 B = 9994.637314 C =11228.371949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.074 0.926 4 C -0.112 4.112 5 C 0.092 3.908 6 H 0.112 0.888 7 O -0.575 6.575 8 C 0.056 3.944 9 N -0.577 5.577 10 C 0.528 3.472 11 O -0.535 6.535 12 C 0.499 3.501 13 O -0.515 6.515 14 N -0.628 5.628 15 C 0.174 3.826 16 C -0.201 4.201 17 C -0.047 4.047 18 C -0.249 4.249 19 C 0.129 3.871 20 O -0.230 6.230 21 C -0.415 4.415 22 H 0.107 0.893 23 C -0.024 4.024 24 N -0.921 5.921 25 Si 1.021 2.979 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.255 1.255 29 C -0.206 4.206 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.396 0.604 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.433 0.567 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.127 0.873 42 H 0.273 0.727 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 15.531 12.444 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.032 3.968 6 H 0.130 0.870 7 O -0.383 6.383 8 C -0.066 4.066 9 N -0.310 5.310 10 C 0.310 3.690 11 O -0.414 6.414 12 C 0.281 3.719 13 O -0.390 6.390 14 N -0.276 5.276 15 C 0.081 3.919 16 C -0.221 4.221 17 C -0.065 4.065 18 C -0.268 4.268 19 C 0.078 3.922 20 O -0.137 6.137 21 C -0.491 4.491 22 H 0.124 0.876 23 C -0.221 4.221 24 N -0.559 5.559 25 Si 0.840 3.160 26 H -0.180 1.180 27 H -0.198 1.198 28 H -0.179 1.179 29 C -0.227 4.227 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.273 0.727 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.377 15.476 12.985 20.670 hybrid contribution 0.466 -0.945 -0.935 1.409 sum -3.911 14.531 12.050 19.278 Atomic orbital electron populations 1.22138 0.93362 1.02783 1.03462 1.21937 0.95386 0.96559 0.83503 0.90784 1.22884 0.95706 1.00656 0.95706 1.23103 0.86572 0.94458 0.92648 0.87001 1.86442 1.21104 1.42724 1.88055 1.23597 0.96933 0.88070 0.98019 1.48386 1.50014 1.28496 1.04071 1.19325 0.81665 0.84928 0.83105 1.90728 1.39922 1.27262 1.83449 1.20529 0.81353 0.85384 0.84601 1.90805 1.38271 1.26367 1.83544 1.42936 1.47081 1.34190 1.03359 1.17300 0.96776 0.88953 0.88914 1.20900 1.06522 1.00991 0.93712 1.21034 0.94734 0.91935 0.98783 1.21396 1.09882 0.96703 0.98870 1.19591 0.94037 0.84431 0.94124 1.83951 1.66353 1.16495 1.46881 1.21867 1.33918 0.94233 0.99100 0.87590 1.26652 0.98391 0.95990 1.01067 1.70202 1.45948 1.09573 1.30210 0.84622 0.78237 0.76972 0.76210 1.18043 1.19785 1.17921 1.20138 1.09940 0.93295 0.99350 0.88594 0.93360 0.91986 0.87546 0.86413 0.75405 0.89648 0.89436 0.72725 0.82268 0.82040 0.85496 0.91848 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.09 71.98 0.65 -1.93 16 2 C 0.13 2.32 3.46 45.34 0.16 2.48 16 3 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -1.32 6.21 31.78 0.20 -1.13 16 5 C 0.09 1.33 4.43 31.99 0.14 1.47 16 6 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 7 O -0.57 -9.85 13.47 -148.98 -2.01 -11.86 16 8 C 0.06 1.21 5.80 86.85 0.50 1.71 16 9 N -0.58 -13.91 3.07 -789.72 -2.42 -16.33 16 10 C 0.53 15.34 7.70 87.24 0.67 16.01 16 11 O -0.54 -16.35 15.53 -3.28 -0.05 -16.40 16 12 C 0.50 16.51 7.69 87.24 0.67 17.18 16 13 O -0.52 -20.08 11.21 -3.33 -0.04 -20.11 16 14 N -0.63 -19.35 5.32 -304.89 -1.62 -20.97 16 15 C 0.17 6.38 6.29 38.20 0.24 6.62 16 16 C -0.20 -6.13 9.96 22.43 0.22 -5.91 16 17 C -0.05 -1.51 10.03 22.23 0.22 -1.28 16 18 C -0.25 -10.65 9.17 22.42 0.21 -10.45 16 19 C 0.13 6.66 6.64 22.56 0.15 6.81 16 20 O -0.23 -14.27 9.75 -22.71 -0.22 -14.49 16 21 C -0.42 -24.35 9.49 67.92 0.64 -23.70 16 22 H 0.11 5.59 5.20 -2.91 -0.02 5.57 16 23 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 24 N -0.92 -57.30 13.67 21.61 0.30 -57.01 16 25 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 28 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 29 C -0.21 -9.63 8.64 22.52 0.19 -9.44 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.03 6.90 -2.39 -0.02 1.01 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.12 0.87 7.85 -2.39 -0.02 0.85 16 35 H 0.40 4.54 9.12 -74.06 -0.68 3.87 16 36 H 0.09 2.26 6.16 -2.38 -0.01 2.25 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.43 10.62 8.30 -92.71 -0.77 9.85 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 41 H 0.13 5.40 5.63 -2.91 -0.02 5.38 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.11 5.54 6.23 -2.91 -0.02 5.52 16 Total: -1.00 -81.09 361.66 0.95 -80.14 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.36 Total: 34.68 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.34 Total: -2.44 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -3.75 Total: -94.31 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -2.32 Total: -62.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -81.09 0.95 -80.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788340996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.780 kcal (2) G-P(sol) polarization free energy of solvation -81.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds