Wall clock time and date at job start Tue Mar 31 2020 18:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99672 * 2 1 4 4 C 1.54339 * 109.99206 * 238.96161 * 2 1 3 5 5 C 1.55152 * 103.02082 * 218.66834 * 4 2 1 6 6 H 1.09007 * 111.00388 * 277.23473 * 5 4 2 7 7 O 1.42896 * 111.03843 * 153.39767 * 5 4 2 8 8 C 1.54906 * 101.58388 * 35.30423 * 5 4 2 9 9 N 1.47022 * 109.88253 * 121.09616 * 2 1 3 10 10 C 1.34776 * 125.64595 * 298.39459 * 9 2 1 11 11 O 1.21360 * 120.00040 * 359.72053 * 10 9 2 12 12 C 1.49348 * 119.99998 * 179.71373 * 10 9 2 13 13 O 1.21373 * 119.99926 * 0.02562 * 12 10 9 14 14 N 1.34776 * 119.99998 * 179.97438 * 12 10 9 15 15 C 1.39729 * 120.00144 * 184.51562 * 14 12 10 16 16 C 1.39014 * 120.04402 * 144.89996 * 15 14 12 17 17 C 1.38141 * 120.06377 * 180.02562 * 16 15 14 18 18 C 1.38187 * 120.14073 * 359.95106 * 17 16 15 19 19 C 1.38915 * 120.08365 * 0.04650 * 18 17 16 20 20 O 1.35758 * 120.03137 * 179.97438 * 19 18 17 21 21 C 1.34826 * 116.99889 * 5.32336 * 20 19 18 22 22 H 1.08002 * 119.99970 * 354.95835 * 21 20 19 23 23 C 1.38645 * 120.00248 * 174.96286 * 21 20 19 24 24 N 1.31561 * 119.99763 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00420 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47144 * 89.99936 * 25 23 21 27 27 H 1.48508 * 109.47080 * 210.00027 * 25 23 21 28 28 H 1.48499 * 109.46737 * 329.99731 * 25 23 21 29 29 C 1.38760 * 119.93723 * 359.97438 * 19 18 17 30 30 H 1.08995 * 109.47267 * 300.36173 * 1 2 3 31 31 H 1.09000 * 109.46701 * 60.35879 * 1 2 3 32 32 H 1.08996 * 109.47120 * 180.35472 * 1 2 3 33 33 H 1.09006 * 110.84873 * 100.19661 * 4 2 1 34 34 H 1.09000 * 110.66544 * 337.04943 * 4 2 1 35 35 H 0.96704 * 113.99927 * 186.32812 * 7 5 4 36 36 H 1.08995 * 110.37115 * 204.15445 * 8 5 4 37 37 H 1.08997 * 110.46026 * 81.87595 * 8 5 4 38 38 H 0.96998 * 120.00323 * 4.51014 * 14 12 10 39 39 H 1.07999 * 119.96955 * 359.97438 * 16 15 14 40 40 H 1.07999 * 119.93593 * 179.97438 * 17 16 15 41 41 H 1.08002 * 119.95783 * 179.97438 * 18 17 16 42 42 H 0.97003 * 120.00213 * 179.97438 * 24 23 21 43 43 H 1.08000 * 120.06669 * 180.27712 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 4.1670 -0.8769 -0.6578 7 8 3.5420 -2.6946 -1.4616 8 6 2.8099 -1.8825 0.7368 9 7 2.0300 -0.7141 1.1839 10 6 1.8074 -0.3620 2.4657 11 8 1.1470 0.6244 2.7181 12 6 2.3732 -1.1859 3.5754 13 8 3.0339 -2.1722 3.3230 14 7 2.1510 -0.8335 4.8572 15 6 2.7574 -1.5483 5.8935 16 6 3.1689 -0.8888 7.0460 17 6 3.7690 -1.5949 8.0705 18 6 3.9612 -2.9583 7.9538 19 6 3.5523 -3.6234 6.8048 20 8 3.7421 -4.9628 6.6910 21 6 4.2313 -5.6055 7.7706 22 1 4.5297 -5.0444 8.6438 23 6 4.3512 -6.9867 7.7597 24 7 3.9882 -7.6702 6.6958 25 14 5.0282 -7.8773 9.2557 26 1 3.9118 -8.2299 10.1691 27 1 5.7230 -9.1161 8.8219 28 1 5.9882 -6.9940 9.9652 29 6 2.9496 -2.9173 5.7734 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.3598 -0.0450 -2.0192 34 1 1.3067 -1.4405 -1.6225 35 1 4.2385 -3.2588 -1.0986 36 1 3.6655 -2.0412 1.3932 37 1 2.1806 -2.7721 0.7134 38 1 1.5701 -0.0838 5.0604 39 1 3.0201 0.1767 7.1401 40 1 4.0882 -1.0804 8.9648 41 1 4.4310 -3.5074 8.7564 42 1 4.0725 -8.6365 6.6880 43 1 2.6268 -3.4330 4.8810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788340997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:27 Heat of formation + Delta-G solvation = -98.273653 kcal Electronic energy + Delta-G solvation = -28399.563455 eV Core-core repulsion = 24218.441072 eV Total energy + Delta-G solvation = -4181.122383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16682 -39.79213 -38.69089 -38.06732 -36.66535 -36.06177 -34.23711 -32.29424 -32.12367 -30.39220 -29.68445 -28.68425 -26.31525 -25.57048 -25.06221 -22.79552 -22.02035 -21.46460 -20.84071 -19.67692 -18.41857 -17.83144 -17.75835 -17.16854 -17.04170 -16.20562 -15.79334 -15.31587 -15.13006 -14.86311 -14.58059 -14.29643 -14.18231 -14.13487 -13.74150 -13.63652 -13.55004 -13.15175 -12.91614 -12.79390 -12.60115 -12.30406 -12.04595 -11.81231 -11.63861 -11.60759 -11.34543 -11.09950 -11.05484 -11.01817 -10.79202 -10.49569 -10.47316 -9.91069 -9.59115 -9.19366 -9.06213 -8.85866 -7.82358 -7.25771 -6.46288 -4.05526 1.21738 1.98382 2.21517 2.29410 3.11060 3.12532 3.17443 3.18145 3.26786 3.78825 3.94459 4.08690 4.25860 4.35649 4.53327 4.59747 4.79273 4.93710 4.99006 5.07462 5.26001 5.26863 5.40270 5.45429 5.53069 5.57025 5.67646 5.73596 5.77641 5.86335 5.99582 6.02155 6.12212 6.28518 6.52769 6.68172 6.91997 6.95517 7.00994 7.27346 7.28879 7.32537 7.40970 7.62337 7.70640 7.98001 8.03734 8.98662 9.68502 10.71418 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002806 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.726665 B = 9975.938192 C =11501.493341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.085 0.915 4 C -0.122 4.122 5 C 0.089 3.911 6 H 0.076 0.924 7 O -0.556 6.556 8 C 0.062 3.938 9 N -0.585 5.585 10 C 0.528 3.472 11 O -0.519 6.519 12 C 0.501 3.499 13 O -0.487 6.487 14 N -0.636 5.636 15 C 0.167 3.833 16 C -0.229 4.229 17 C -0.058 4.058 18 C -0.241 4.241 19 C 0.166 3.834 20 O -0.172 6.172 21 C -0.392 4.392 22 H 0.093 0.907 23 C 0.040 3.960 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 C -0.184 4.184 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.387 0.613 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.270 0.730 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 14.601 -11.976 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.103 0.897 4 C -0.159 4.159 5 C 0.029 3.971 6 H 0.094 0.906 7 O -0.361 6.361 8 C -0.060 4.060 9 N -0.321 5.321 10 C 0.312 3.688 11 O -0.395 6.395 12 C 0.283 3.717 13 O -0.361 6.361 14 N -0.282 5.282 15 C 0.075 3.925 16 C -0.250 4.250 17 C -0.076 4.076 18 C -0.261 4.261 19 C 0.111 3.889 20 O -0.075 6.075 21 C -0.469 4.469 22 H 0.111 0.889 23 C -0.165 4.165 24 N -0.494 5.494 25 Si 0.766 3.234 26 H -0.199 1.199 27 H -0.202 1.202 28 H -0.192 1.192 29 C -0.205 4.205 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.080 0.920 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.374 14.284 -12.635 19.367 hybrid contribution 0.500 -0.293 1.295 1.419 sum -2.874 13.990 -11.340 18.237 Atomic orbital electron populations 1.22160 0.93864 1.02883 1.03355 1.21720 0.95422 0.96536 0.83091 0.89721 1.22766 0.97410 0.99340 0.96432 1.22967 0.97400 0.87311 0.89425 0.90599 1.86484 1.61446 1.35849 1.52343 1.23464 0.97779 0.88582 0.96215 1.48151 1.51332 1.28306 1.04277 1.19763 0.81240 0.85217 0.82625 1.90746 1.38957 1.26689 1.83142 1.20006 0.81971 0.85759 0.84003 1.90801 1.37243 1.24985 1.83028 1.42988 1.47378 1.33914 1.03922 1.17173 0.97642 0.90115 0.87611 1.20305 1.10282 0.98795 0.95627 1.20522 0.96488 0.93566 0.97070 1.21224 1.09700 0.94847 1.00328 1.19099 0.91913 0.85521 0.92356 1.83990 1.71563 1.13955 1.38002 1.21351 1.42207 0.89775 0.93527 0.88939 1.25305 0.97073 0.95467 0.98648 1.70050 1.43831 1.07735 1.27803 0.85704 0.78950 0.78972 0.79750 1.19854 1.20244 1.19162 1.20142 1.07927 0.91606 1.00871 0.90858 0.91162 0.92070 0.89183 0.89102 0.76420 0.87409 0.89698 0.74533 0.87075 0.86804 0.85299 0.91971 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.11 37.16 0.34 -1.10 16 2 C 0.13 1.21 3.46 -66.94 -0.23 0.98 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -0.91 6.22 -24.89 -0.15 -1.07 16 5 C 0.09 0.75 4.43 -24.59 -0.11 0.64 16 6 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 7 O -0.56 -4.88 13.47 -35.23 -0.47 -5.35 16 8 C 0.06 0.68 5.79 -2.53 -0.01 0.66 16 9 N -0.58 -6.78 3.06 -163.56 -0.50 -7.29 16 10 C 0.53 7.30 7.70 -11.63 -0.09 7.22 16 11 O -0.52 -7.62 15.53 5.49 0.09 -7.54 16 12 C 0.50 7.93 7.69 -11.63 -0.09 7.84 16 13 O -0.49 -8.86 11.22 5.48 0.06 -8.80 16 14 N -0.64 -9.81 5.32 -10.31 -0.05 -9.87 16 15 C 0.17 3.09 6.29 -83.77 -0.53 2.57 16 16 C -0.23 -3.88 9.97 -39.33 -0.39 -4.27 16 17 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 18 C -0.24 -5.17 9.17 -39.35 -0.36 -5.53 16 19 C 0.17 4.06 6.64 -39.14 -0.26 3.80 16 20 O -0.17 -4.95 9.76 0.04 0.00 -4.95 16 21 C -0.39 -10.92 9.49 30.88 0.29 -10.62 16 22 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 23 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 24 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 25 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 29 C -0.18 -4.10 8.63 -39.19 -0.34 -4.44 16 30 H 0.07 0.78 6.89 -51.93 -0.36 0.42 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.39 2.13 9.11 45.56 0.42 2.55 16 36 H 0.11 1.32 6.16 -51.93 -0.32 1.00 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.42 5.34 8.30 -40.82 -0.34 5.00 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.13 2.73 5.63 -52.49 -0.30 2.44 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 3.13 6.24 -52.49 -0.33 2.80 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -33.49 361.66 -6.55 -40.04 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.42 Total: 11.16 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.43 Total: -3.75 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.20 Total: -41.58 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.33 Total: -26.65 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.49 -6.55 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788340997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.237 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds