Wall clock time and date at job start Tue Mar 31 2020 18:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99672 * 2 1 4 4 C 1.54339 * 109.99206 * 238.96161 * 2 1 3 5 5 C 1.55152 * 103.02082 * 218.66834 * 4 2 1 6 6 H 1.09007 * 111.00388 * 277.23473 * 5 4 2 7 7 O 1.42896 * 111.03843 * 153.39767 * 5 4 2 8 8 C 1.54906 * 101.58388 * 35.30423 * 5 4 2 9 9 N 1.47022 * 109.88253 * 121.09616 * 2 1 3 10 10 C 1.34776 * 125.64595 * 298.39459 * 9 2 1 11 11 O 1.21360 * 120.00040 * 359.72053 * 10 9 2 12 12 C 1.49348 * 119.99998 * 179.71373 * 10 9 2 13 13 O 1.21373 * 119.99926 * 0.02562 * 12 10 9 14 14 N 1.34776 * 119.99998 * 179.97438 * 12 10 9 15 15 C 1.39729 * 120.00144 * 184.51562 * 14 12 10 16 16 C 1.39014 * 120.04402 * 144.89996 * 15 14 12 17 17 C 1.38141 * 120.06377 * 180.02562 * 16 15 14 18 18 C 1.38187 * 120.14073 * 359.95106 * 17 16 15 19 19 C 1.38915 * 120.08365 * 0.04650 * 18 17 16 20 20 O 1.35758 * 120.03137 * 179.97438 * 19 18 17 21 21 C 1.34826 * 116.99889 * 5.32336 * 20 19 18 22 22 H 1.08002 * 119.99970 * 354.95835 * 21 20 19 23 23 C 1.38645 * 120.00248 * 174.96286 * 21 20 19 24 24 N 1.31561 * 119.99763 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00420 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47144 * 89.99936 * 25 23 21 27 27 H 1.48508 * 109.47080 * 210.00027 * 25 23 21 28 28 H 1.48499 * 109.46737 * 329.99731 * 25 23 21 29 29 C 1.38760 * 119.93723 * 359.97438 * 19 18 17 30 30 H 1.08995 * 109.47267 * 300.36173 * 1 2 3 31 31 H 1.09000 * 109.46701 * 60.35879 * 1 2 3 32 32 H 1.08996 * 109.47120 * 180.35472 * 1 2 3 33 33 H 1.09006 * 110.84873 * 100.19661 * 4 2 1 34 34 H 1.09000 * 110.66544 * 337.04943 * 4 2 1 35 35 H 0.96704 * 113.99927 * 186.32812 * 7 5 4 36 36 H 1.08995 * 110.37115 * 204.15445 * 8 5 4 37 37 H 1.08997 * 110.46026 * 81.87595 * 8 5 4 38 38 H 0.96998 * 120.00323 * 4.51014 * 14 12 10 39 39 H 1.07999 * 119.96955 * 359.97438 * 16 15 14 40 40 H 1.07999 * 119.93593 * 179.97438 * 17 16 15 41 41 H 1.08002 * 119.95783 * 179.97438 * 18 17 16 42 42 H 0.97003 * 120.00213 * 179.97438 * 24 23 21 43 43 H 1.08000 * 120.06669 * 180.27712 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 4.1670 -0.8769 -0.6578 7 8 3.5420 -2.6946 -1.4616 8 6 2.8099 -1.8825 0.7368 9 7 2.0300 -0.7141 1.1839 10 6 1.8074 -0.3620 2.4657 11 8 1.1470 0.6244 2.7181 12 6 2.3732 -1.1859 3.5754 13 8 3.0339 -2.1722 3.3230 14 7 2.1510 -0.8335 4.8572 15 6 2.7574 -1.5483 5.8935 16 6 3.1689 -0.8888 7.0460 17 6 3.7690 -1.5949 8.0705 18 6 3.9612 -2.9583 7.9538 19 6 3.5523 -3.6234 6.8048 20 8 3.7421 -4.9628 6.6910 21 6 4.2313 -5.6055 7.7706 22 1 4.5297 -5.0444 8.6438 23 6 4.3512 -6.9867 7.7597 24 7 3.9882 -7.6702 6.6958 25 14 5.0282 -7.8773 9.2557 26 1 3.9118 -8.2299 10.1691 27 1 5.7230 -9.1161 8.8219 28 1 5.9882 -6.9940 9.9652 29 6 2.9496 -2.9173 5.7734 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.3598 -0.0450 -2.0192 34 1 1.3067 -1.4405 -1.6225 35 1 4.2385 -3.2588 -1.0986 36 1 3.6655 -2.0412 1.3932 37 1 2.1806 -2.7721 0.7134 38 1 1.5701 -0.0838 5.0604 39 1 3.0201 0.1767 7.1401 40 1 4.0882 -1.0804 8.9648 41 1 4.4310 -3.5074 8.7564 42 1 4.0725 -8.6365 6.6880 43 1 2.6268 -3.4330 4.8810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788340997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:27 Heat of formation + Delta-G solvation = -124.684260 kcal Electronic energy + Delta-G solvation = -28400.708704 eV Core-core repulsion = 24218.441072 eV Total energy + Delta-G solvation = -4182.267633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34776 -41.08125 -40.19329 -39.13944 -38.29801 -36.87542 -35.68265 -34.26726 -32.99768 -31.31925 -31.16586 -30.28031 -27.44704 -27.11778 -26.36977 -24.07086 -23.32020 -22.70967 -21.99947 -20.80144 -20.04481 -19.27186 -18.65813 -18.56796 -18.14486 -17.35711 -17.12312 -16.79391 -16.69752 -16.05439 -15.89329 -15.82255 -15.50525 -15.24849 -15.11624 -14.88402 -14.48640 -14.41475 -14.27844 -14.08448 -13.60059 -13.53923 -13.26395 -13.13029 -13.01651 -12.78376 -12.69829 -12.48211 -12.35675 -12.13018 -12.05084 -11.81681 -11.47029 -11.29487 -11.16031 -10.77988 -10.56290 -10.02727 -9.43582 -8.95409 -8.46778 -6.16120 -0.07606 0.56535 0.67558 1.01844 1.35888 1.45657 1.53942 1.93490 2.12941 2.21863 2.80090 2.95020 3.13086 3.17442 3.46673 3.53944 3.54869 3.95308 4.02971 4.10107 4.21488 4.28622 4.33020 4.36068 4.54159 4.58679 4.65094 4.66245 4.69906 4.84543 4.90192 4.95147 5.03498 5.10210 5.13256 5.25439 5.29103 5.34349 5.59813 5.69899 5.85611 6.00606 6.03823 6.12199 6.50592 6.73222 6.76443 6.97162 7.77793 8.76637 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002806 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.726665 B = 9975.938192 C =11501.493341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 H 0.098 0.902 4 C -0.114 4.114 5 C 0.097 3.903 6 H 0.092 0.908 7 O -0.567 6.567 8 C 0.061 3.939 9 N -0.580 5.580 10 C 0.532 3.468 11 O -0.527 6.527 12 C 0.498 3.502 13 O -0.516 6.516 14 N -0.627 5.627 15 C 0.174 3.826 16 C -0.199 4.199 17 C -0.047 4.047 18 C -0.249 4.249 19 C 0.129 3.871 20 O -0.231 6.231 21 C -0.414 4.414 22 H 0.107 0.893 23 C -0.025 4.025 24 N -0.922 5.922 25 Si 1.021 2.979 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.249 1.249 29 C -0.206 4.206 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.433 0.567 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.127 0.873 42 H 0.272 0.728 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 18.034 -11.461 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.116 0.884 4 C -0.151 4.151 5 C 0.037 3.963 6 H 0.110 0.890 7 O -0.375 6.375 8 C -0.062 4.062 9 N -0.315 5.315 10 C 0.315 3.685 11 O -0.405 6.405 12 C 0.280 3.720 13 O -0.391 6.391 14 N -0.275 5.275 15 C 0.081 3.919 16 C -0.220 4.220 17 C -0.065 4.065 18 C -0.268 4.268 19 C 0.078 3.922 20 O -0.138 6.138 21 C -0.490 4.490 22 H 0.125 0.875 23 C -0.222 4.222 24 N -0.560 5.560 25 Si 0.840 3.160 26 H -0.188 1.188 27 H -0.198 1.198 28 H -0.173 1.173 29 C -0.228 4.228 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.274 0.726 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.137 17.798 -12.143 21.773 hybrid contribution 0.337 -1.036 1.020 1.492 sum -2.800 16.762 -11.123 20.311 Atomic orbital electron populations 1.22133 0.93551 1.02430 1.03752 1.22012 0.95710 0.97082 0.82361 0.88436 1.22788 0.96682 0.99526 0.96123 1.22971 0.98413 0.87472 0.87448 0.89022 1.86455 1.62223 1.36293 1.52485 1.23462 0.96792 0.88072 0.97874 1.48267 1.50564 1.28357 1.04291 1.19276 0.81469 0.84917 0.82866 1.90742 1.39548 1.26895 1.83301 1.20541 0.81353 0.85466 0.84651 1.90815 1.38430 1.26289 1.83543 1.42924 1.47338 1.33896 1.03298 1.17291 0.96830 0.88847 0.88977 1.20904 1.06459 1.01001 0.93606 1.21040 0.94807 0.91856 0.98793 1.21391 1.09667 0.96705 0.99074 1.19604 0.93567 0.84687 0.94382 1.83959 1.74334 1.16217 1.39269 1.21903 1.42480 0.90585 0.94011 0.87544 1.26661 0.97264 0.96058 1.02199 1.70213 1.46922 1.08068 1.30793 0.84552 0.78603 0.77497 0.75325 1.18783 1.19773 1.17278 1.20143 1.09277 0.93470 0.99867 0.92765 0.88434 0.92916 0.86427 0.89323 0.74995 0.89223 0.91112 0.72626 0.82107 0.82022 0.85558 0.91868 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.11 71.98 0.66 -1.89 16 2 C 0.13 2.09 3.46 45.35 0.16 2.24 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.11 -1.43 6.22 31.79 0.20 -1.23 16 5 C 0.10 1.50 4.43 31.98 0.14 1.65 16 6 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 7 O -0.57 -9.40 13.47 -148.98 -2.01 -11.40 16 8 C 0.06 1.35 5.79 86.85 0.50 1.85 16 9 N -0.58 -13.14 3.06 -789.72 -2.42 -15.56 16 10 C 0.53 14.46 7.70 87.24 0.67 15.13 16 11 O -0.53 -14.80 15.53 -3.28 -0.05 -14.85 16 12 C 0.50 15.87 7.69 87.24 0.67 16.55 16 13 O -0.52 -19.78 11.22 -3.32 -0.04 -19.81 16 14 N -0.63 -18.61 5.32 -304.90 -1.62 -20.23 16 15 C 0.17 6.25 6.29 38.20 0.24 6.49 16 16 C -0.20 -5.92 9.97 22.43 0.22 -5.70 16 17 C -0.05 -1.48 10.03 22.23 0.22 -1.26 16 18 C -0.25 -10.57 9.17 22.42 0.21 -10.37 16 19 C 0.13 6.61 6.64 22.56 0.15 6.76 16 20 O -0.23 -14.34 9.76 -22.79 -0.22 -14.56 16 21 C -0.41 -24.26 9.49 67.92 0.64 -23.61 16 22 H 0.11 5.61 5.20 -2.91 -0.02 5.60 16 23 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 24 N -0.92 -57.53 13.67 21.61 0.30 -57.24 16 25 Si 1.02 42.85 29.55 68.60 2.03 44.88 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 29 C -0.21 -9.59 8.63 22.52 0.19 -9.40 16 30 H 0.05 1.08 6.89 -2.39 -0.02 1.07 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 1.20 7.85 -2.39 -0.02 1.18 16 35 H 0.40 4.27 9.11 -74.05 -0.67 3.59 16 36 H 0.09 2.32 6.16 -2.39 -0.01 2.31 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.43 10.04 8.30 -92.71 -0.77 9.27 16 39 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.13 5.36 5.63 -2.91 -0.02 5.34 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.11 5.47 6.24 -2.91 -0.02 5.45 16 Total: -1.00 -79.88 361.66 0.95 -78.93 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.36 Total: 33.58 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.34 Total: -3.74 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -3.75 Total: -93.02 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -2.32 Total: -60.62 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.88 0.95 -78.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788340997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.755 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds