Wall clock time and date at job start Tue Mar 31 2020 17:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35957 * 117.00210 * 2 1 4 4 C 1.38733 * 119.99197 * 179.97438 * 3 2 1 5 5 C 1.38081 * 120.01389 * 180.23574 * 4 3 2 6 6 C 1.38828 * 119.98528 * 359.51671 * 5 4 3 7 7 N 1.40277 * 120.01095 * 180.20882 * 6 5 4 8 8 C 1.37475 * 125.84338 * 64.99443 * 7 6 5 9 9 C 1.50700 * 125.59514 * 0.03530 * 8 7 6 10 10 N 1.29429 * 108.80731 * 179.87976 * 8 7 6 11 11 N 1.40173 * 108.14344 * 0.37700 * 10 8 7 12 12 C 1.46499 * 126.33879 * 179.79243 * 11 10 8 13 13 N 1.46496 * 109.47387 * 269.96331 * 12 11 10 14 14 C 1.46508 * 119.99498 * 269.99906 * 13 12 11 15 15 C 1.36930 * 120.00240 * 89.99804 * 13 12 11 16 16 H 1.08005 * 119.99947 * 22.03961 * 15 13 12 17 17 C 1.38815 * 120.00268 * 202.02940 * 15 13 12 18 18 N 1.31617 * 119.99706 * 11.27466 * 17 15 13 19 19 Si 1.86799 * 120.00194 * 191.26937 * 17 15 13 20 20 H 1.48497 * 109.47051 * 60.00238 * 19 17 15 21 21 H 1.48499 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47103 * 300.00339 * 19 17 15 23 23 C 1.34814 * 125.84233 * 245.30480 * 7 6 5 24 24 S 1.71205 * 126.29474 * 359.97438 * 23 7 6 25 25 C 1.38829 * 119.97665 * 0.48530 * 6 5 4 26 26 C 1.38084 * 119.99012 * 359.74476 * 25 6 5 27 27 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46858 * 299.99780 * 1 2 3 29 29 H 1.08994 * 109.47250 * 59.99519 * 1 2 3 30 30 H 1.08004 * 119.99024 * 359.96342 * 4 3 2 31 31 H 1.07997 * 119.99950 * 179.75241 * 5 4 3 32 32 H 1.08995 * 109.47527 * 90.00286 * 9 8 7 33 33 H 1.09000 * 109.47151 * 210.00638 * 9 8 7 34 34 H 1.09001 * 109.46978 * 330.00048 * 9 8 7 35 35 H 1.09002 * 109.47234 * 29.96589 * 12 11 10 36 36 H 1.09010 * 109.46827 * 149.95865 * 12 11 10 37 37 H 1.09002 * 109.46557 * 94.66075 * 14 13 12 38 38 H 1.09001 * 109.46913 * 214.65449 * 14 13 12 39 39 H 1.08995 * 109.47298 * 334.65964 * 14 13 12 40 40 H 0.97004 * 120.00079 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.00626 * 179.76660 * 25 6 5 42 42 H 1.07996 * 119.99163 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0591 2.5138 0.0055 6 6 3.3032 3.6782 -0.0003 7 7 3.9400 4.9281 0.0003 8 6 4.7299 5.4296 -1.0070 9 6 5.0556 4.7258 -2.2991 10 7 5.1452 6.6067 -0.6647 11 7 4.6294 6.8993 0.6054 12 6 4.8543 8.1275 1.3718 13 7 6.0439 7.9681 2.2117 14 6 5.9151 7.4352 3.5704 15 6 7.2760 8.3173 1.7271 16 1 7.3558 9.0171 0.9083 17 6 8.4226 7.7719 2.2882 18 7 8.3285 6.7619 3.1268 19 14 10.0991 8.4715 1.8530 20 1 10.1547 9.9031 2.2435 21 1 11.1533 7.7186 2.5790 22 1 10.3222 8.3484 0.3899 23 6 3.8870 5.8406 0.9912 24 16 3.0346 5.6849 2.4678 25 6 1.9168 3.6053 -0.0008 26 6 1.2904 2.3747 -0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0196 0.3777 0.0016 31 1 5.1376 2.5698 0.0099 32 1 4.3065 4.9787 -3.0494 33 1 6.0392 5.0416 -2.6469 34 1 5.0568 3.6482 -2.1356 35 1 5.0028 8.9616 0.6860 36 1 3.9877 8.3257 2.0027 37 1 6.0931 6.3599 3.5571 38 1 6.6460 7.9165 4.2202 39 1 4.9106 7.6326 3.9444 40 1 9.1298 6.3806 3.5187 41 1 1.3283 4.5109 -0.0014 42 1 0.2120 2.3179 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794624230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:02 Heat of formation + Delta-G solvation = 115.842941 kcal Electronic energy + Delta-G solvation = -26493.149079 eV Core-core repulsion = 22796.357111 eV Total energy + Delta-G solvation = -3696.791969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23423 -40.22269 -37.85837 -36.12261 -34.13114 -32.98181 -31.44932 -31.27690 -29.47290 -28.63896 -27.47450 -26.28882 -25.71218 -23.48068 -22.78823 -22.31136 -21.25571 -20.56171 -18.53773 -18.11630 -17.12005 -16.74363 -16.07366 -15.96784 -15.77821 -15.65295 -14.79954 -14.76014 -14.07639 -13.99649 -13.80911 -13.60389 -13.47030 -13.12160 -13.03335 -12.82452 -12.67875 -12.20934 -12.09491 -11.60295 -11.48550 -11.30406 -11.11437 -11.05838 -10.89448 -10.63927 -10.56163 -10.29586 -10.21741 -10.15261 -9.72658 -9.21481 -8.86566 -8.33565 -7.37416 -6.93214 -6.84917 -6.06549 -3.54406 1.00484 1.16150 1.81656 2.09249 2.19841 2.96747 3.05576 3.08291 3.26771 3.28214 3.29560 3.47627 4.23306 4.55640 4.58786 4.65712 4.77986 4.85145 4.89474 5.04972 5.18718 5.19153 5.22901 5.26129 5.32477 5.34256 5.44760 5.64300 5.67371 5.81042 5.88270 6.08987 6.11620 6.11835 6.32373 6.37814 6.83577 6.91904 7.09774 7.24153 7.32346 7.54318 7.73505 7.88904 8.02455 8.84804 9.41762 9.88355 10.92856 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.003331 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.980516 B = 8404.003274 C = 8697.894741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.138 3.862 4 C -0.141 4.141 5 C -0.062 4.062 6 C 0.097 3.903 7 N -0.454 5.454 8 C 0.239 3.761 9 C -0.070 4.070 10 N -0.267 5.267 11 N -0.347 5.347 12 C 0.338 3.662 13 N -0.537 5.537 14 C 0.151 3.849 15 C -0.276 4.276 16 H 0.081 0.919 17 C 0.017 3.983 18 N -0.880 5.880 19 Si 0.917 3.083 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.461 3.539 24 S -0.635 6.635 25 C -0.036 4.036 26 C -0.197 4.197 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.133 0.867 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 -10.540 -11.838 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.092 3.908 4 C -0.161 4.161 5 C -0.082 4.082 6 C 0.006 3.994 7 N -0.153 5.153 8 C -0.040 4.040 9 C -0.130 4.130 10 N -0.087 5.087 11 N -0.147 5.147 12 C 0.131 3.869 13 N -0.250 5.250 14 C 0.007 3.993 15 C -0.407 4.407 16 H 0.099 0.901 17 C -0.186 4.186 18 N -0.520 5.520 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.204 1.204 23 C 0.100 3.900 24 S -0.507 6.507 25 C -0.056 4.056 26 C -0.216 4.216 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.150 0.850 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.782 -9.818 -10.949 18.844 hybrid contribution 0.873 -0.266 -0.567 1.074 sum -10.909 -10.084 -11.516 18.797 Atomic orbital electron populations 1.23094 0.78196 1.04015 1.01652 1.86084 1.21573 1.26736 1.88473 1.19070 0.92292 0.84190 0.95238 1.20203 0.91343 0.97931 1.06595 1.20949 1.00273 0.90245 0.96754 1.17206 0.91349 0.82105 1.08745 1.43713 1.41758 1.14909 1.14914 1.24662 0.93457 0.92250 0.93642 1.20377 1.04210 0.99587 0.88825 1.77230 1.19004 1.12660 0.99848 1.55040 1.33509 1.15977 1.10212 1.22837 0.91638 0.83412 0.88980 1.45259 1.03644 1.66333 1.09808 1.21150 0.96402 0.98897 0.82846 1.19416 0.82255 1.20822 1.18205 0.90124 1.25299 0.99170 0.95723 0.98407 1.70135 1.28881 1.22161 1.30857 0.86145 0.82298 0.78718 0.78294 1.20290 1.21219 1.20383 1.24354 0.89618 0.84084 0.91986 1.92970 1.56125 1.90262 1.11338 1.20872 0.92492 0.98137 0.94100 1.21055 1.00284 0.91327 1.08977 0.88193 0.92302 0.92516 0.84285 0.84667 0.89167 0.88295 0.89766 0.89244 0.88194 0.94072 0.93084 0.95722 0.92803 0.84960 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.23 10.50 -19.61 -0.21 -3.43 16 3 C 0.14 1.57 6.69 -39.22 -0.26 1.31 16 4 C -0.14 -1.64 9.98 -39.46 -0.39 -2.03 16 5 C -0.06 -0.83 8.79 -39.42 -0.35 -1.18 16 6 C 0.10 1.46 5.01 -83.55 -0.42 1.05 16 7 N -0.45 -8.07 2.78 -58.66 -0.16 -8.23 16 8 C 0.24 3.92 7.91 -154.03 -1.22 2.70 16 9 C -0.07 -0.74 10.18 36.01 0.37 -0.38 16 10 N -0.27 -5.28 12.53 33.00 0.41 -4.87 16 11 N -0.35 -7.49 3.86 -65.18 -0.25 -7.74 16 12 C 0.34 7.31 6.81 -63.76 -0.43 6.88 16 13 N -0.54 -13.49 3.17 -184.85 -0.59 -14.08 16 14 C 0.15 3.88 9.01 59.85 0.54 4.42 16 15 C -0.28 -7.32 9.68 -15.06 -0.15 -7.47 16 16 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 17 C 0.02 0.46 5.14 -17.43 -0.09 0.37 16 18 N -0.88 -25.05 10.56 55.49 0.59 -24.47 16 19 Si 0.92 20.96 29.57 -169.99 -5.03 15.94 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 C 0.46 9.88 7.77 -86.74 -0.67 9.21 16 24 S -0.63 -14.87 29.66 -107.50 -3.19 -18.06 16 25 C -0.04 -0.49 9.59 -39.42 -0.38 -0.87 16 26 C -0.20 -2.21 9.03 -39.46 -0.36 -2.57 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.76 6.86 -51.93 -0.36 0.40 16 35 H 0.09 1.78 8.03 -51.93 -0.42 1.36 16 36 H 0.10 2.08 7.41 -51.92 -0.38 1.69 16 37 H 0.04 1.19 7.40 -51.93 -0.38 0.80 16 38 H 0.05 1.36 7.19 -51.93 -0.37 0.98 16 39 H 0.02 0.59 7.84 -51.93 -0.41 0.18 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 42 H 0.14 1.16 6.29 -52.49 -0.33 0.83 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -34.31 370.42 -11.19 -45.50 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.53 Total: 1.28 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -2.82 Total: 12.59 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.00 Total: -59.39 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.21 Total: -3.43 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: -14.87 SS G_CDS: -3.19 Total: -18.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.31 -11.19 -45.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794624230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.343 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds