Wall clock time and date at job start Tue Mar 31 2020 17:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35957 * 117.00210 * 2 1 4 4 C 1.38733 * 119.99197 * 179.97438 * 3 2 1 5 5 C 1.38081 * 120.01389 * 180.23574 * 4 3 2 6 6 C 1.38828 * 119.98528 * 359.51671 * 5 4 3 7 7 N 1.40277 * 120.01095 * 180.20882 * 6 5 4 8 8 C 1.37475 * 125.84338 * 64.99443 * 7 6 5 9 9 C 1.50700 * 125.59514 * 0.03530 * 8 7 6 10 10 N 1.29429 * 108.80731 * 179.87976 * 8 7 6 11 11 N 1.40173 * 108.14344 * 0.37700 * 10 8 7 12 12 C 1.46499 * 126.33879 * 179.79243 * 11 10 8 13 13 N 1.46496 * 109.47387 * 269.96331 * 12 11 10 14 14 C 1.46508 * 119.99498 * 269.99906 * 13 12 11 15 15 C 1.36930 * 120.00240 * 89.99804 * 13 12 11 16 16 H 1.08005 * 119.99947 * 22.03961 * 15 13 12 17 17 C 1.38815 * 120.00268 * 202.02940 * 15 13 12 18 18 N 1.31617 * 119.99706 * 11.27466 * 17 15 13 19 19 Si 1.86799 * 120.00194 * 191.26937 * 17 15 13 20 20 H 1.48497 * 109.47051 * 60.00238 * 19 17 15 21 21 H 1.48499 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47103 * 300.00339 * 19 17 15 23 23 C 1.34814 * 125.84233 * 245.30480 * 7 6 5 24 24 S 1.71205 * 126.29474 * 359.97438 * 23 7 6 25 25 C 1.38829 * 119.97665 * 0.48530 * 6 5 4 26 26 C 1.38084 * 119.99012 * 359.74476 * 25 6 5 27 27 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46858 * 299.99780 * 1 2 3 29 29 H 1.08994 * 109.47250 * 59.99519 * 1 2 3 30 30 H 1.08004 * 119.99024 * 359.96342 * 4 3 2 31 31 H 1.07997 * 119.99950 * 179.75241 * 5 4 3 32 32 H 1.08995 * 109.47527 * 90.00286 * 9 8 7 33 33 H 1.09000 * 109.47151 * 210.00638 * 9 8 7 34 34 H 1.09001 * 109.46978 * 330.00048 * 9 8 7 35 35 H 1.09002 * 109.47234 * 29.96589 * 12 11 10 36 36 H 1.09010 * 109.46827 * 149.95865 * 12 11 10 37 37 H 1.09002 * 109.46557 * 94.66075 * 14 13 12 38 38 H 1.09001 * 109.46913 * 214.65449 * 14 13 12 39 39 H 1.08995 * 109.47298 * 334.65964 * 14 13 12 40 40 H 0.97004 * 120.00079 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.00626 * 179.76660 * 25 6 5 42 42 H 1.07996 * 119.99163 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0591 2.5138 0.0055 6 6 3.3032 3.6782 -0.0003 7 7 3.9400 4.9281 0.0003 8 6 4.7299 5.4296 -1.0070 9 6 5.0556 4.7258 -2.2991 10 7 5.1452 6.6067 -0.6647 11 7 4.6294 6.8993 0.6054 12 6 4.8543 8.1275 1.3718 13 7 6.0439 7.9681 2.2117 14 6 5.9151 7.4352 3.5704 15 6 7.2760 8.3173 1.7271 16 1 7.3558 9.0171 0.9083 17 6 8.4226 7.7719 2.2882 18 7 8.3285 6.7619 3.1268 19 14 10.0991 8.4715 1.8530 20 1 10.1547 9.9031 2.2435 21 1 11.1533 7.7186 2.5790 22 1 10.3222 8.3484 0.3899 23 6 3.8870 5.8406 0.9912 24 16 3.0346 5.6849 2.4678 25 6 1.9168 3.6053 -0.0008 26 6 1.2904 2.3747 -0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0196 0.3777 0.0016 31 1 5.1376 2.5698 0.0099 32 1 4.3065 4.9787 -3.0494 33 1 6.0392 5.0416 -2.6469 34 1 5.0568 3.6482 -2.1356 35 1 5.0028 8.9616 0.6860 36 1 3.9877 8.3257 2.0027 37 1 6.0931 6.3599 3.5571 38 1 6.6460 7.9165 4.2202 39 1 4.9106 7.6326 3.9444 40 1 9.1298 6.3806 3.5187 41 1 1.3283 4.5109 -0.0014 42 1 0.2120 2.3179 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794624230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:01 Heat of formation + Delta-G solvation = 97.277862 kcal Electronic energy + Delta-G solvation = -26493.954122 eV Core-core repulsion = 22796.357111 eV Total energy + Delta-G solvation = -3697.597011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.76677 -41.13721 -38.91913 -37.87231 -35.64506 -34.41949 -33.21077 -32.29389 -30.65800 -29.90523 -28.39606 -28.07675 -27.36387 -24.99606 -23.82421 -23.62586 -23.06944 -21.88529 -19.75406 -19.16108 -19.00656 -17.95579 -17.67433 -17.47639 -17.03214 -16.65950 -16.40795 -15.73688 -15.66658 -15.45152 -15.15293 -14.85089 -14.57459 -14.18469 -14.08809 -14.03091 -13.82412 -13.57567 -13.33751 -13.05767 -12.91559 -12.80339 -12.72678 -12.53062 -12.33330 -12.26780 -12.22542 -12.02876 -11.97503 -11.64164 -11.26461 -10.85730 -10.18427 -9.36793 -9.33180 -8.78344 -8.64839 -8.04387 -5.60233 -0.09618 0.14775 0.21015 0.50606 0.80860 1.34921 1.42090 1.47646 1.52054 1.65527 2.28217 2.36665 2.48043 3.15858 3.23033 3.38908 3.55531 3.66571 3.74465 4.03639 4.05974 4.21238 4.30016 4.36694 4.42104 4.44482 4.48638 4.56202 4.65539 4.74480 4.78889 4.81047 4.88196 4.95701 5.12687 5.15025 5.25998 5.37219 5.41137 5.49746 5.59500 5.81612 6.03469 6.32159 6.32391 6.85007 7.47828 7.92589 8.95818 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.003331 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.980516 B = 8404.003274 C = 8697.894741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.145 3.855 4 C -0.139 4.139 5 C -0.064 4.064 6 C 0.061 3.939 7 N -0.443 5.443 8 C 0.260 3.740 9 C -0.070 4.070 10 N -0.298 5.298 11 N -0.360 5.360 12 C 0.353 3.647 13 N -0.563 5.563 14 C 0.183 3.817 15 C -0.285 4.285 16 H 0.086 0.914 17 C -0.037 4.037 18 N -0.924 5.924 19 Si 0.983 3.017 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.459 3.541 24 S -0.683 6.683 25 C -0.042 4.042 26 C -0.190 4.190 27 H 0.123 0.877 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.000 1.000 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.255 0.745 41 H 0.124 0.876 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 -12.166 -14.626 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.099 3.901 4 C -0.158 4.158 5 C -0.084 4.084 6 C -0.028 4.028 7 N -0.140 5.140 8 C -0.018 4.018 9 C -0.129 4.129 10 N -0.119 5.119 11 N -0.157 5.157 12 C 0.146 3.854 13 N -0.279 5.279 14 C 0.038 3.962 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.235 4.235 18 N -0.566 5.566 19 Si 0.809 3.191 20 H -0.194 1.194 21 H -0.219 1.219 22 H -0.197 1.197 23 C 0.094 3.906 24 S -0.556 6.556 25 C -0.062 4.062 26 C -0.209 4.209 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.178 0.822 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.018 0.982 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.142 0.858 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.944 -11.470 -13.814 22.135 hybrid contribution 0.893 -0.006 0.050 0.894 sum -12.051 -11.476 -13.764 21.595 Atomic orbital electron populations 1.23441 0.76046 1.05975 1.02583 1.86096 1.23775 1.25883 1.87894 1.19190 0.92404 0.84777 0.93720 1.20424 0.91904 0.97920 1.05590 1.20959 1.00255 0.90226 0.96944 1.17491 0.92135 0.81126 1.12069 1.43708 1.41155 1.15211 1.13907 1.25885 0.90582 0.90955 0.94385 1.20768 1.05794 1.00145 0.86200 1.77231 1.20955 1.15019 0.98727 1.53672 1.34103 1.16252 1.11685 1.22522 0.90905 0.82659 0.89289 1.45152 1.04095 1.68474 1.10188 1.20650 0.95932 0.95937 0.83633 1.19658 0.82961 1.20833 1.18032 0.89600 1.26087 1.02565 0.96152 0.98725 1.70315 1.29068 1.24192 1.33071 0.85121 0.77868 0.78091 0.78004 1.19422 1.21871 1.19676 1.23885 0.89798 0.84854 0.92049 1.92971 1.57997 1.91014 1.13631 1.20874 0.91843 0.98885 0.94593 1.21287 1.01694 0.90269 1.07647 0.85927 0.91962 0.90919 0.82220 0.84676 0.85877 0.87048 0.87700 0.87350 0.87721 0.98182 0.95005 0.94868 0.93597 0.85814 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.52 10.50 -93.07 -0.98 -6.50 16 3 C 0.15 2.89 6.69 22.51 0.15 3.04 16 4 C -0.14 -2.87 9.98 22.35 0.22 -2.65 16 5 C -0.06 -1.59 8.79 22.37 0.20 -1.40 16 6 C 0.06 1.78 5.01 38.07 0.19 1.97 16 7 N -0.44 -15.42 2.78 -339.50 -0.94 -16.37 16 8 C 0.26 8.11 7.91 137.64 1.09 9.20 16 9 C -0.07 -1.24 10.18 71.24 0.72 -0.52 16 10 N -0.30 -11.56 12.53 -49.51 -0.62 -12.18 16 11 N -0.36 -15.59 3.86 -360.12 -1.39 -16.98 16 12 C 0.35 15.42 6.81 170.96 1.16 16.58 16 13 N -0.56 -29.03 3.17 -738.74 -2.34 -31.37 16 14 C 0.18 9.88 9.01 127.77 1.15 11.03 16 15 C -0.28 -15.36 9.68 84.04 0.81 -14.55 16 16 H 0.09 4.41 7.84 -2.91 -0.02 4.39 16 17 C -0.04 -2.06 5.14 84.86 0.44 -1.62 16 18 N -0.92 -54.83 10.56 21.65 0.23 -54.61 16 19 Si 0.98 43.89 29.57 68.60 2.03 45.92 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.46 19.82 7.77 178.99 1.39 21.21 16 24 S -0.68 -32.72 29.66 -56.49 -1.68 -34.40 16 25 C -0.04 -1.09 9.59 22.37 0.21 -0.87 16 26 C -0.19 -3.76 9.03 22.35 0.20 -3.56 16 27 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 29 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 30 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.51 6.86 -2.39 -0.02 1.49 16 35 H 0.11 4.28 8.03 -2.39 -0.02 4.26 16 36 H 0.11 4.43 7.41 -2.38 -0.02 4.41 16 37 H 0.00 -0.02 7.40 -2.39 -0.02 -0.04 16 38 H 0.03 1.78 7.19 -2.39 -0.02 1.76 16 39 H 0.03 1.67 7.84 -2.39 -0.02 1.65 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.12 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.16 2.24 6.29 -2.91 -0.02 2.23 16 Total: -1.00 -77.99 370.42 4.41 -73.58 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.04 Total: 13.80 kcal Atomic # 6 Polarization: 30.05 SS G_CDS: 9.06 Total: 39.11 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -5.06 Total: -131.51 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.98 Total: -6.50 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -32.72 SS G_CDS: -1.68 Total: -34.40 kcal Total: -77.99 4.41 -73.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794624230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.860 kcal (2) G-P(sol) polarization free energy of solvation -77.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds