Wall clock time and date at job start Tue Mar 31 2020 17:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46917 * 2 1 4 4 O 1.33624 * 125.80661 * 270.17552 * 3 2 1 5 5 C 1.34221 * 110.92099 * 180.26379 * 4 3 2 6 6 C 1.34157 * 109.14400 * 359.74827 * 5 4 3 7 7 C 1.36497 * 125.80611 * 90.00363 * 3 2 1 8 8 C 1.47229 * 127.20132 * 0.02562 * 7 3 2 9 9 O 1.21538 * 120.00195 * 359.97438 * 8 7 3 10 10 O 1.34774 * 119.99791 * 179.70914 * 8 7 3 11 11 C 1.45196 * 116.99825 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47396 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99337 * 359.97438 * 12 11 10 14 14 N 1.34768 * 120.00290 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00015 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47273 * 90.00026 * 15 14 12 17 17 H 1.08003 * 120.00247 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00292 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99534 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00231 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46967 * 89.99820 * 20 18 16 22 22 H 1.48492 * 109.47248 * 210.00276 * 20 18 16 23 23 H 1.48505 * 109.47068 * 330.00224 * 20 18 16 24 24 C 1.46500 * 120.00329 * 359.97438 * 14 12 11 25 25 C 1.53002 * 109.47092 * 89.99693 * 24 14 12 26 26 C 1.47200 * 109.46999 * 180.02562 * 25 24 14 27 27 N 8.93811 * 96.45970 * 99.57857 * 2 1 3 28 28 H 1.09003 * 109.46633 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47138 * 299.99581 * 1 2 3 30 30 H 1.08999 * 109.47496 * 60.00102 * 1 2 3 31 31 H 1.09000 * 109.47138 * 240.00419 * 2 1 3 32 32 H 1.08999 * 109.47496 * 119.99898 * 2 1 3 33 33 H 1.08002 * 125.42357 * 179.73306 * 5 4 3 34 34 H 1.07996 * 127.02221 * 179.97438 * 6 5 4 35 35 H 1.09012 * 109.47257 * 299.99889 * 11 10 8 36 36 H 1.08996 * 109.47465 * 59.99946 * 11 10 8 37 37 H 1.08999 * 109.47428 * 209.99946 * 15 14 12 38 38 H 1.09005 * 109.47258 * 329.99725 * 15 14 12 39 39 H 0.97002 * 119.99436 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.47264 * 209.99982 * 24 14 12 41 41 H 1.09000 * 109.46882 * 330.00367 * 24 14 12 42 42 H 1.08994 * 109.47302 * 300.00265 * 25 24 14 43 43 H 1.09000 * 109.46706 * 60.00567 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2898 2.1591 -1.0837 5 6 2.7285 3.3798 -0.7389 6 6 2.7641 3.4729 0.5990 7 6 2.2985 2.1738 1.1070 8 6 2.1557 1.7679 2.5150 9 8 1.7611 0.6514 2.7886 10 8 2.4677 2.6327 3.5005 11 6 2.3019 2.1648 4.8650 12 6 2.6957 3.2595 5.8229 13 8 3.0789 4.3287 5.3973 14 7 2.6222 3.0505 7.1522 15 6 3.0055 4.1146 8.0833 16 6 1.7999 4.9598 8.4042 17 1 0.8438 4.7280 7.9587 18 6 1.9177 6.0300 9.2656 19 7 3.0820 6.3127 9.8077 20 14 0.4233 7.0782 9.6627 21 1 -0.2727 6.5186 10.8491 22 1 0.8569 8.4684 9.9532 23 1 -0.5023 7.0808 8.5014 24 6 2.1588 1.7593 7.6662 25 6 3.3551 0.8220 7.8436 26 6 2.8894 -0.4756 8.3595 27 7 2.5356 -1.4779 8.7575 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0086 4.1622 -1.4287 34 1 3.0721 4.3272 1.1834 35 1 1.2593 1.8939 5.0321 36 1 2.9347 1.2927 5.0295 37 1 3.3936 3.6722 9.0008 38 1 3.7748 4.7374 7.6266 39 1 3.1649 7.0657 10.4134 40 1 1.6668 1.9063 8.6276 41 1 1.4540 1.3192 6.9608 42 1 3.8471 0.6749 6.8822 43 1 4.0599 1.2620 8.5490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797486626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:30 Heat of formation + Delta-G solvation = -79.699901 kcal Electronic energy + Delta-G solvation = -27989.071710 eV Core-core repulsion = 23808.754745 eV Total energy + Delta-G solvation = -4180.316965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.88900 -40.36887 -39.11330 -36.94553 -36.40538 -35.28629 -34.34468 -33.10488 -32.93233 -30.92249 -29.58905 -28.98064 -26.84665 -24.78209 -24.09366 -23.39466 -22.69099 -21.55112 -19.93086 -18.83604 -18.28332 -17.70915 -17.07312 -16.76260 -16.54497 -16.42334 -16.19324 -15.84050 -15.37777 -14.76559 -14.74105 -14.55973 -14.51510 -14.12978 -13.71665 -13.39397 -13.22636 -12.96731 -12.82167 -12.73540 -12.55155 -12.48839 -12.21566 -12.10676 -11.91062 -11.79278 -11.37327 -11.33234 -11.06062 -10.98407 -10.70906 -10.63406 -10.62546 -10.23201 -10.10483 -9.76636 -9.14971 -8.92179 -8.51185 -7.97119 -6.13012 -4.17883 0.92890 1.78379 2.26662 2.61129 2.72230 2.80858 2.90599 3.11772 3.26730 3.34136 3.38207 3.61643 4.11763 4.16968 4.38361 4.50329 4.68143 4.76967 4.79827 4.89657 4.92342 5.01375 5.10219 5.13232 5.17250 5.22977 5.26462 5.43079 5.47785 5.55082 5.64421 5.70404 5.75857 5.89854 6.00557 6.07774 6.28304 6.72461 6.82602 7.25628 7.33499 7.56087 7.67694 7.82908 8.08756 8.12047 8.71106 8.88359 9.47853 10.95188 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.002998 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.201429 B = 9338.481259 C =11131.055695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C 0.091 3.909 4 O -0.171 6.171 5 C -0.047 4.047 6 C -0.161 4.161 7 C -0.229 4.229 8 C 0.541 3.459 9 O -0.513 6.513 10 O -0.320 6.320 11 C 0.047 3.953 12 C 0.509 3.491 13 O -0.509 6.509 14 N -0.592 5.592 15 C 0.246 3.754 16 C -0.532 4.532 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.112 3.888 25 C -0.051 4.051 26 C 0.217 3.783 27 N -0.442 5.442 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.212 0.788 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -10.857 -18.687 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 C 0.038 3.962 4 O -0.067 6.067 5 C -0.112 4.112 6 C -0.180 4.180 7 C -0.231 4.231 8 C 0.387 3.613 9 O -0.404 6.404 10 O -0.235 6.235 11 C -0.030 4.030 12 C 0.294 3.706 13 O -0.383 6.383 14 N -0.325 5.325 15 C 0.128 3.872 16 C -0.571 4.571 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.014 4.014 25 C -0.093 4.093 26 C -0.102 4.102 27 N -0.120 5.120 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.228 0.772 34 H 0.185 0.815 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.775 -12.002 -18.360 21.949 hybrid contribution -0.588 1.187 0.491 1.413 sum -1.363 -10.815 -17.868 20.931 Atomic orbital electron populations 1.21711 0.93035 1.02893 1.02620 1.20464 0.97224 0.86174 1.05357 1.22862 0.96045 0.94257 0.83014 1.83784 1.65017 1.23465 1.34449 1.23943 1.04723 0.86068 0.96513 1.23063 1.02991 0.97792 0.94166 1.20164 1.15568 0.96977 0.90433 1.19952 0.73694 0.82374 0.85319 1.90817 1.44040 1.21078 1.84434 1.86636 1.78348 1.43425 1.15068 1.22996 1.03686 0.97497 0.78841 1.19727 0.79818 0.88109 0.82944 1.90740 1.45053 1.25782 1.76733 1.48152 1.64924 1.14266 1.05180 1.19416 0.96778 0.84172 0.86810 1.21411 0.95566 1.12965 1.27113 0.92266 1.24912 0.96178 0.97070 0.95744 1.69916 1.23258 1.29126 1.30840 0.86499 0.82695 0.79664 0.78609 1.20612 1.21069 1.19841 1.21402 0.93866 0.83465 1.02653 1.19892 1.00756 0.85384 1.03246 1.28990 0.93463 0.94498 0.93213 1.81167 1.08865 1.12318 1.09604 0.91098 0.91806 0.92400 0.89596 0.86812 0.77180 0.81454 0.88414 0.88620 0.94307 0.93344 0.92596 0.88189 0.90606 0.87647 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.77 16 2 C -0.06 -0.47 5.94 -27.88 -0.17 -0.63 16 3 C 0.09 0.97 6.63 -34.93 -0.23 0.74 16 4 O -0.17 -1.67 10.52 7.71 0.08 -1.59 16 5 C -0.05 -0.40 12.03 29.29 0.35 -0.05 16 6 C -0.16 -1.77 11.05 -37.45 -0.41 -2.18 16 7 C -0.23 -2.88 6.32 -103.30 -0.65 -3.53 16 8 C 0.54 7.75 7.95 34.38 0.27 8.02 16 9 O -0.51 -7.46 14.64 -19.30 -0.28 -7.74 16 10 O -0.32 -5.10 9.67 -47.38 -0.46 -5.56 16 11 C 0.05 0.68 4.51 36.01 0.16 0.84 16 12 C 0.51 9.49 7.75 -10.99 -0.09 9.40 16 13 O -0.51 -11.95 16.08 -14.11 -0.23 -12.18 16 14 N -0.59 -10.60 2.46 -175.06 -0.43 -11.03 16 15 C 0.25 5.69 5.16 -5.20 -0.03 5.66 16 16 C -0.53 -13.96 9.39 -34.44 -0.32 -14.28 16 17 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 20 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 1.45 5.17 -4.04 -0.02 1.43 16 25 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 26 C 0.22 2.61 15.43 -20.79 -0.32 2.29 16 27 N -0.44 -6.54 18.53 42.11 0.78 -5.76 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.11 1.07 6.49 -51.93 -0.34 0.73 16 33 H 0.21 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.10 1.26 7.40 -51.92 -0.38 0.88 16 36 H 0.10 1.11 7.18 -51.93 -0.37 0.74 16 37 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 42 H 0.11 0.89 7.22 -51.93 -0.37 0.51 16 43 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -34.48 385.98 -5.89 -40.38 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.53 Total: -1.81 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.36 Total: 7.86 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.09 Total: -41.15 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.89 Total: -27.07 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.48 -5.89 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797486626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.321 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds