Wall clock time and date at job start Tue Mar 31 2020 17:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46917 * 2 1 4 4 O 1.33624 * 125.80661 * 270.17552 * 3 2 1 5 5 C 1.34221 * 110.92099 * 180.26379 * 4 3 2 6 6 C 1.34157 * 109.14400 * 359.74827 * 5 4 3 7 7 C 1.36497 * 125.80611 * 90.00363 * 3 2 1 8 8 C 1.47229 * 127.20132 * 0.02562 * 7 3 2 9 9 O 1.21538 * 120.00195 * 359.97438 * 8 7 3 10 10 O 1.34774 * 119.99791 * 179.70914 * 8 7 3 11 11 C 1.45196 * 116.99825 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47396 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99337 * 359.97438 * 12 11 10 14 14 N 1.34768 * 120.00290 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00015 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47273 * 90.00026 * 15 14 12 17 17 H 1.08003 * 120.00247 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00292 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99534 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00231 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46967 * 89.99820 * 20 18 16 22 22 H 1.48492 * 109.47248 * 210.00276 * 20 18 16 23 23 H 1.48505 * 109.47068 * 330.00224 * 20 18 16 24 24 C 1.46500 * 120.00329 * 359.97438 * 14 12 11 25 25 C 1.53002 * 109.47092 * 89.99693 * 24 14 12 26 26 C 1.47200 * 109.46999 * 180.02562 * 25 24 14 27 27 N 8.93811 * 96.45970 * 99.57857 * 2 1 3 28 28 H 1.09003 * 109.46633 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47138 * 299.99581 * 1 2 3 30 30 H 1.08999 * 109.47496 * 60.00102 * 1 2 3 31 31 H 1.09000 * 109.47138 * 240.00419 * 2 1 3 32 32 H 1.08999 * 109.47496 * 119.99898 * 2 1 3 33 33 H 1.08002 * 125.42357 * 179.73306 * 5 4 3 34 34 H 1.07996 * 127.02221 * 179.97438 * 6 5 4 35 35 H 1.09012 * 109.47257 * 299.99889 * 11 10 8 36 36 H 1.08996 * 109.47465 * 59.99946 * 11 10 8 37 37 H 1.08999 * 109.47428 * 209.99946 * 15 14 12 38 38 H 1.09005 * 109.47258 * 329.99725 * 15 14 12 39 39 H 0.97002 * 119.99436 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.47264 * 209.99982 * 24 14 12 41 41 H 1.09000 * 109.46882 * 330.00367 * 24 14 12 42 42 H 1.08994 * 109.47302 * 300.00265 * 25 24 14 43 43 H 1.09000 * 109.46706 * 60.00567 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2898 2.1591 -1.0837 5 6 2.7285 3.3798 -0.7389 6 6 2.7641 3.4729 0.5990 7 6 2.2985 2.1738 1.1070 8 6 2.1557 1.7679 2.5150 9 8 1.7611 0.6514 2.7886 10 8 2.4677 2.6327 3.5005 11 6 2.3019 2.1648 4.8650 12 6 2.6957 3.2595 5.8229 13 8 3.0789 4.3287 5.3973 14 7 2.6222 3.0505 7.1522 15 6 3.0055 4.1146 8.0833 16 6 1.7999 4.9598 8.4042 17 1 0.8438 4.7280 7.9587 18 6 1.9177 6.0300 9.2656 19 7 3.0820 6.3127 9.8077 20 14 0.4233 7.0782 9.6627 21 1 -0.2727 6.5186 10.8491 22 1 0.8569 8.4684 9.9532 23 1 -0.5023 7.0808 8.5014 24 6 2.1588 1.7593 7.6662 25 6 3.3551 0.8220 7.8436 26 6 2.8894 -0.4756 8.3595 27 7 2.5356 -1.4779 8.7575 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0086 4.1622 -1.4287 34 1 3.0721 4.3272 1.1834 35 1 1.2593 1.8939 5.0321 36 1 2.9347 1.2927 5.0295 37 1 3.3936 3.6722 9.0008 38 1 3.7748 4.7374 7.6266 39 1 3.1649 7.0657 10.4134 40 1 1.6668 1.9063 8.6276 41 1 1.4540 1.3192 6.9608 42 1 3.8471 0.6749 6.8822 43 1 4.0599 1.2620 8.5490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797486626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:29 Heat of formation + Delta-G solvation = -99.502902 kcal Electronic energy + Delta-G solvation = -27989.930433 eV Core-core repulsion = 23808.754745 eV Total energy + Delta-G solvation = -4181.175687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.66915 -41.55330 -40.50287 -38.07990 -37.54261 -36.71898 -35.05852 -34.88848 -33.87554 -32.23266 -30.86563 -29.87290 -28.48265 -25.77604 -25.36963 -24.49631 -23.96286 -22.45849 -20.85632 -20.21002 -19.23177 -18.87998 -18.39080 -18.08794 -17.77144 -17.71514 -17.16393 -17.09169 -16.57437 -16.14039 -15.87171 -15.72949 -15.39299 -15.22044 -14.84538 -14.53039 -14.40903 -14.12081 -13.83489 -13.78588 -13.64307 -13.59230 -13.52129 -13.28851 -13.17358 -12.96948 -12.74410 -12.54183 -12.51393 -12.19752 -12.09115 -12.03514 -11.75162 -11.67939 -11.63387 -10.95831 -10.70972 -10.58116 -9.68014 -9.58411 -8.18636 -6.30444 0.03221 1.00764 1.19810 1.40652 1.43110 1.52127 1.58133 1.76462 1.83742 1.84822 1.93744 2.33173 2.45802 3.04573 3.14211 3.47708 3.55366 3.63518 3.79182 3.93023 3.99311 4.09322 4.12972 4.13593 4.27355 4.42523 4.52190 4.54161 4.74666 4.79810 4.94900 4.96556 4.99679 5.01772 5.06667 5.21451 5.31510 5.32103 5.33893 5.56280 5.83241 5.95010 6.11100 6.52404 6.59579 6.65953 6.78544 7.24904 7.42043 8.88408 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.002998 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.201429 B = 9338.481259 C =11131.055695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C 0.099 3.901 4 O -0.169 6.169 5 C -0.023 4.023 6 C -0.193 4.193 7 C -0.263 4.263 8 C 0.540 3.460 9 O -0.519 6.519 10 O -0.343 6.343 11 C 0.055 3.945 12 C 0.506 3.494 13 O -0.568 6.568 14 N -0.589 5.589 15 C 0.261 3.739 16 C -0.544 4.544 17 H 0.054 0.946 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.957 3.043 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.107 3.893 25 C -0.040 4.040 26 C 0.245 3.755 27 N -0.487 5.487 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.254 0.746 34 H 0.161 0.839 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.043 0.957 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -12.196 -20.349 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C 0.045 3.955 4 O -0.064 6.064 5 C -0.087 4.087 6 C -0.212 4.212 7 C -0.266 4.266 8 C 0.387 3.613 9 O -0.411 6.411 10 O -0.258 6.258 11 C -0.022 4.022 12 C 0.294 3.706 13 O -0.447 6.447 14 N -0.321 5.321 15 C 0.140 3.860 16 C -0.582 4.582 17 H 0.072 0.928 18 C -0.186 4.186 19 N -0.564 5.564 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.017 4.017 25 C -0.081 4.081 26 C -0.072 4.072 27 N -0.165 5.165 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.270 0.730 34 H 0.178 0.822 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.636 -13.400 -20.012 24.139 hybrid contribution -0.308 1.611 0.943 1.892 sum -1.944 -11.789 -19.069 22.503 Atomic orbital electron populations 1.21698 0.92518 1.03837 1.01896 1.20572 0.97537 0.84997 1.06146 1.23214 0.94791 0.94873 0.82584 1.83827 1.64731 1.23860 1.34027 1.24672 1.01889 0.85942 0.96243 1.23138 1.05099 0.97512 0.95458 1.20338 1.17711 0.98437 0.90075 1.20202 0.73368 0.82111 0.85605 1.90795 1.44583 1.21132 1.84585 1.86629 1.78866 1.44568 1.15756 1.22973 1.05401 0.96180 0.77613 1.20436 0.78467 0.88334 0.83398 1.90710 1.47739 1.28478 1.77767 1.47984 1.64484 1.14963 1.04637 1.18902 0.94714 0.84986 0.87384 1.21751 0.96245 1.13555 1.26682 0.92764 1.25697 0.98708 0.98354 0.95864 1.70015 1.24995 1.29782 1.31588 0.85564 0.79532 0.78037 0.78582 1.19198 1.20983 1.19982 1.21646 0.95439 0.81601 1.03035 1.19842 0.99597 0.83740 1.04890 1.29054 0.92169 0.94108 0.91886 1.81210 1.10199 1.13857 1.11223 0.89351 0.93983 0.91612 0.86944 0.87830 0.73025 0.82177 0.86440 0.85148 0.93888 0.97421 0.92506 0.88758 0.87791 0.84883 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.06 -0.83 5.94 29.85 0.18 -0.66 16 3 C 0.10 1.96 6.63 25.28 0.17 2.13 16 4 O -0.17 -2.92 10.52 4.66 0.05 -2.87 16 5 C -0.02 -0.34 12.03 66.89 0.80 0.46 16 6 C -0.19 -4.18 11.05 23.65 0.26 -3.92 16 7 C -0.26 -6.53 6.32 -19.01 -0.12 -6.65 16 8 C 0.54 15.28 7.95 70.19 0.56 15.84 16 9 O -0.52 -14.54 14.64 19.71 0.29 -14.26 16 10 O -0.34 -10.92 9.67 -50.47 -0.49 -11.40 16 11 C 0.05 1.51 4.51 71.24 0.32 1.83 16 12 C 0.51 18.91 7.75 87.66 0.68 19.58 16 13 O -0.57 -27.76 16.08 15.76 0.25 -27.50 16 14 N -0.59 -20.90 2.46 -826.17 -2.03 -22.93 16 15 C 0.26 12.31 5.16 85.63 0.44 12.76 16 16 C -0.54 -28.97 9.39 25.60 0.24 -28.73 16 17 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.01 0.72 5.46 84.66 0.46 1.18 16 19 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 20 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.11 2.56 5.17 86.38 0.45 3.01 16 25 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 26 C 0.25 5.39 15.43 89.45 1.38 6.77 16 27 N -0.49 -13.68 18.53 19.99 0.37 -13.31 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.80 6.49 -2.39 -0.02 1.78 16 33 H 0.25 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.12 2.78 7.40 -2.38 -0.02 2.76 16 36 H 0.13 2.64 7.18 -2.39 -0.02 2.63 16 37 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 38 H 0.01 0.43 7.42 -2.38 -0.02 0.41 16 39 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 41 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 42 H 0.13 1.75 7.22 -2.39 -0.02 1.74 16 43 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -78.01 385.98 8.51 -69.50 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.04 Total: 8.24 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.71 Total: 21.82 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.37 Total: -88.81 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: 0.10 Total: -56.03 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -78.01 8.51 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797486626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.002 kcal (2) G-P(sol) polarization free energy of solvation -78.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds