Wall clock time and date at job start Tue Mar 31 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00347 * 2 1 4 4 N 1.46499 * 109.47108 * 124.99567 * 3 2 1 5 5 C 1.46500 * 119.99831 * 269.99881 * 4 3 2 6 6 C 1.50703 * 109.47004 * 270.00002 * 5 4 3 7 7 H 1.07996 * 120.00461 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99808 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00305 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99907 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47124 * 60.00158 * 10 8 6 12 12 H 1.48498 * 109.47056 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47113 * 300.00131 * 10 8 6 14 14 C 1.34777 * 120.00288 * 90.00503 * 4 3 2 15 15 O 1.21279 * 120.00313 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99633 * 359.97438 * 14 4 3 17 17 H 1.09006 * 109.87414 * 319.56352 * 16 14 4 18 18 C 1.54316 * 109.88408 * 80.74146 * 16 14 4 19 19 C 1.55160 * 102.94268 * 141.60946 * 18 16 14 20 20 C 1.54910 * 101.58122 * 324.49825 * 19 18 16 21 21 N 1.47026 * 109.88038 * 198.55253 * 16 14 4 22 22 C 1.34771 * 125.65100 * 61.37441 * 21 16 14 23 23 O 1.21278 * 120.00143 * 0.02562 * 22 21 16 24 24 C 1.50706 * 119.99931 * 180.02562 * 22 21 16 25 25 F 1.39908 * 109.46830 * 180.02562 * 24 22 21 26 26 F 1.39902 * 109.46809 * 299.99813 * 24 22 21 27 27 F 1.39894 * 109.47074 * 59.99877 * 24 22 21 28 28 H 1.07995 * 120.00323 * 180.02562 * 1 2 3 29 29 H 1.08009 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08009 * 119.99713 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46902 * 4.99370 * 3 2 1 32 32 H 1.09007 * 109.46956 * 244.99385 * 3 2 1 33 33 H 1.08991 * 109.47508 * 30.00107 * 5 4 3 34 34 H 1.09002 * 109.46952 * 150.00917 * 5 4 3 35 35 H 0.96993 * 119.99970 * 179.97438 * 9 8 6 36 36 H 1.08997 * 110.72381 * 259.97204 * 18 16 14 37 37 H 1.09003 * 110.72277 * 23.06927 * 18 16 14 38 38 H 1.08991 * 111.00600 * 82.57442 * 19 18 16 39 39 H 1.09004 * 111.00084 * 206.38888 * 19 18 16 40 40 H 1.09001 * 110.36852 * 278.17238 * 20 19 18 41 41 H 1.08998 * 110.36449 * 155.84885 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0666 3.6084 9 7 1.9597 3.4660 4.6359 10 14 2.8725 5.8997 3.6769 11 1 2.1358 6.5869 2.5859 12 1 2.4317 6.4401 4.9880 13 1 4.3301 6.1295 3.5111 14 6 4.2496 0.8661 0.9826 15 8 5.0196 0.8879 1.9194 16 6 4.6969 0.3173 -0.3478 17 1 3.8977 -0.2768 -0.7912 18 6 5.0794 1.4764 -1.2919 19 6 6.3181 0.9193 -2.0421 20 6 7.0059 0.0868 -0.9315 21 7 5.8966 -0.5134 -0.1681 22 6 5.9715 -1.6346 0.5760 23 8 4.9922 -2.0358 1.1683 24 6 7.2721 -2.3899 0.6719 25 9 7.1018 -3.5094 1.4935 26 9 7.6657 -2.8046 -0.6050 27 9 8.2559 -1.5571 1.2156 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 1.4887 1.6968 2.5459 34 1 3.0988 1.3604 3.2260 35 1 1.7314 3.9746 5.4297 36 1 4.2694 1.6889 -1.9896 37 1 5.3394 2.3684 -0.7219 38 1 6.0172 0.2852 -2.8760 39 1 6.9650 1.7279 -2.3824 40 1 7.6032 0.7328 -0.2881 41 1 7.6285 -0.6920 -1.3718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816802945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:14 Heat of formation + Delta-G solvation = -180.996904 kcal Electronic energy + Delta-G solvation = -30657.937036 eV Core-core repulsion = 25931.370764 eV Total energy + Delta-G solvation = -4726.566273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.44719 -47.97954 -47.90050 -40.74613 -38.76355 -37.36135 -35.69768 -33.21633 -32.37720 -31.96660 -30.10105 -27.88409 -27.35283 -25.56880 -24.18815 -22.90003 -21.79656 -20.94903 -19.89218 -19.25865 -18.90396 -18.53804 -17.95079 -17.26342 -16.55610 -16.47237 -15.45902 -15.34953 -14.97458 -14.73334 -14.64013 -14.47414 -14.45466 -14.34734 -14.25829 -14.05294 -14.02587 -13.76399 -13.60678 -13.13565 -12.92661 -12.72237 -12.47644 -12.21294 -11.93362 -11.67952 -11.43646 -11.24599 -11.13234 -11.00118 -10.92829 -10.60222 -10.41396 -10.21293 -9.69225 -9.50183 -9.20230 -8.66772 -8.44531 -7.73808 -6.05148 -4.10741 1.66350 1.83870 2.43513 2.81336 3.23198 3.29509 3.34808 3.36397 3.42109 3.81093 3.93982 4.04786 4.20184 4.38290 4.42423 4.67408 4.88854 4.97085 5.11467 5.21881 5.28671 5.33559 5.41501 5.43673 5.51202 5.60419 5.63255 5.80184 5.95986 5.99349 6.15500 6.80128 6.86302 6.90103 7.05205 7.38939 7.44852 7.50567 7.90107 8.20864 8.32899 8.85206 9.00335 9.53964 11.02976 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.004009 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.578437 B = 6983.009295 C = 7438.467780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.133 3.867 4 N -0.587 5.587 5 C 0.249 3.751 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.503 3.497 15 O -0.525 6.525 16 C 0.115 3.885 17 H 0.103 0.897 18 C -0.122 4.122 19 C -0.126 4.126 20 C 0.083 3.917 21 N -0.576 5.576 22 C 0.501 3.499 23 O -0.466 6.466 24 C 0.457 3.543 25 F -0.153 7.153 26 F -0.171 7.171 27 F -0.163 7.163 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 -8.233 -17.655 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.009 3.991 4 N -0.318 5.318 5 C 0.130 3.870 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.287 3.713 15 O -0.401 6.401 16 C 0.009 3.991 17 H 0.120 0.880 18 C -0.160 4.160 19 C -0.164 4.164 20 C -0.039 4.039 21 N -0.310 5.310 22 C 0.281 3.719 23 O -0.337 6.337 24 C 0.399 3.601 25 F -0.134 7.134 26 F -0.153 7.153 27 F -0.144 7.144 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.163 -8.483 -16.539 19.920 hybrid contribution 0.356 0.797 0.280 0.917 sum 7.520 -7.686 -16.259 19.493 Atomic orbital electron populations 1.23815 0.95780 1.01788 1.00297 1.23451 0.96527 0.99031 1.00118 1.20678 0.93224 0.95622 0.89568 1.48160 1.09878 1.60040 1.13732 1.19289 0.95481 0.93682 0.78526 1.21357 1.40861 0.93184 1.01256 0.92511 1.24938 0.95046 0.98720 0.95330 1.69929 1.41766 1.36284 1.05156 0.86566 0.78755 0.84914 0.77208 1.20234 1.21170 1.20230 1.20246 0.82933 0.79079 0.89056 1.90692 1.52633 1.55696 1.41106 1.21861 0.88091 0.92923 0.96253 0.87969 1.22676 0.98985 0.96967 0.97353 1.22763 0.96926 0.99825 0.96845 1.22757 0.89425 0.98127 0.93614 1.47984 1.13225 1.22846 1.46930 1.19700 0.88606 0.82151 0.81435 1.90899 1.34811 1.66028 1.41997 1.20157 0.86077 0.79193 0.74685 1.93263 1.95377 1.52494 1.72291 1.93212 1.91994 1.90897 1.39174 1.93274 1.64105 1.71169 1.85881 0.88734 0.88238 0.87695 0.89122 0.90897 0.94838 0.93925 0.92620 0.88526 0.88999 0.89867 0.88738 0.89554 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.32 29.02 0.42 -1.94 16 2 C -0.17 -2.51 9.42 -36.02 -0.34 -2.85 16 3 C 0.13 2.09 5.47 -5.19 -0.03 2.06 16 4 N -0.59 -12.33 2.44 -176.43 -0.43 -12.76 16 5 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 6 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.50 10.45 6.10 -10.98 -0.07 10.38 16 15 O -0.53 -13.47 15.69 5.56 0.09 -13.38 16 16 C 0.12 1.69 2.35 -68.11 -0.16 1.53 16 17 H 0.10 1.35 6.62 -51.93 -0.34 1.01 16 18 C -0.12 -1.28 5.84 -24.90 -0.15 -1.42 16 19 C -0.13 -0.94 7.09 -24.58 -0.17 -1.11 16 20 C 0.08 0.83 6.21 -2.53 -0.02 0.82 16 21 N -0.58 -8.27 2.76 -164.32 -0.45 -8.73 16 22 C 0.50 8.24 6.78 -10.98 -0.07 8.16 16 23 O -0.47 -9.39 16.40 5.56 0.09 -9.30 16 24 C 0.46 6.29 2.92 36.01 0.10 6.39 16 25 F -0.15 -2.25 16.92 2.25 0.04 -2.22 16 26 F -0.17 -1.91 15.77 2.25 0.04 -1.88 16 27 F -0.16 -2.24 16.74 2.25 0.04 -2.20 16 28 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.10 1.25 7.84 -52.48 -0.41 0.84 16 30 H 0.11 1.56 7.78 -52.48 -0.41 1.15 16 31 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 32 H 0.07 0.89 5.16 -51.92 -0.27 0.62 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.10 0.77 7.11 -51.93 -0.37 0.40 16 37 H 0.09 1.14 7.84 -51.93 -0.41 0.74 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.70 6.47 -51.93 -0.34 0.36 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -35.33 358.02 -5.40 -40.73 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.99 Total: -1.48 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: -0.93 Total: 15.19 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.15 Total: -47.42 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.18 Total: -22.68 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.33 -5.40 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816802945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.262 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds