Wall clock time and date at job start Tue Mar 31 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00347 * 2 1 4 4 N 1.46499 * 109.47108 * 124.99567 * 3 2 1 5 5 C 1.46500 * 119.99831 * 269.99881 * 4 3 2 6 6 C 1.50703 * 109.47004 * 270.00002 * 5 4 3 7 7 H 1.07996 * 120.00461 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99808 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00305 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99907 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47124 * 60.00158 * 10 8 6 12 12 H 1.48498 * 109.47056 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47113 * 300.00131 * 10 8 6 14 14 C 1.34777 * 120.00288 * 90.00503 * 4 3 2 15 15 O 1.21279 * 120.00313 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99633 * 359.97438 * 14 4 3 17 17 H 1.09006 * 109.87414 * 319.56352 * 16 14 4 18 18 C 1.54316 * 109.88408 * 80.74146 * 16 14 4 19 19 C 1.55160 * 102.94268 * 141.60946 * 18 16 14 20 20 C 1.54910 * 101.58122 * 324.49825 * 19 18 16 21 21 N 1.47026 * 109.88038 * 198.55253 * 16 14 4 22 22 C 1.34771 * 125.65100 * 61.37441 * 21 16 14 23 23 O 1.21278 * 120.00143 * 0.02562 * 22 21 16 24 24 C 1.50706 * 119.99931 * 180.02562 * 22 21 16 25 25 F 1.39908 * 109.46830 * 180.02562 * 24 22 21 26 26 F 1.39902 * 109.46809 * 299.99813 * 24 22 21 27 27 F 1.39894 * 109.47074 * 59.99877 * 24 22 21 28 28 H 1.07995 * 120.00323 * 180.02562 * 1 2 3 29 29 H 1.08009 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08009 * 119.99713 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46902 * 4.99370 * 3 2 1 32 32 H 1.09007 * 109.46956 * 244.99385 * 3 2 1 33 33 H 1.08991 * 109.47508 * 30.00107 * 5 4 3 34 34 H 1.09002 * 109.46952 * 150.00917 * 5 4 3 35 35 H 0.96993 * 119.99970 * 179.97438 * 9 8 6 36 36 H 1.08997 * 110.72381 * 259.97204 * 18 16 14 37 37 H 1.09003 * 110.72277 * 23.06927 * 18 16 14 38 38 H 1.08991 * 111.00600 * 82.57442 * 19 18 16 39 39 H 1.09004 * 111.00084 * 206.38888 * 19 18 16 40 40 H 1.09001 * 110.36852 * 278.17238 * 20 19 18 41 41 H 1.08998 * 110.36449 * 155.84885 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0666 3.6084 9 7 1.9597 3.4660 4.6359 10 14 2.8725 5.8997 3.6769 11 1 2.1358 6.5869 2.5859 12 1 2.4317 6.4401 4.9880 13 1 4.3301 6.1295 3.5111 14 6 4.2496 0.8661 0.9826 15 8 5.0196 0.8879 1.9194 16 6 4.6969 0.3173 -0.3478 17 1 3.8977 -0.2768 -0.7912 18 6 5.0794 1.4764 -1.2919 19 6 6.3181 0.9193 -2.0421 20 6 7.0059 0.0868 -0.9315 21 7 5.8966 -0.5134 -0.1681 22 6 5.9715 -1.6346 0.5760 23 8 4.9922 -2.0358 1.1683 24 6 7.2721 -2.3899 0.6719 25 9 7.1018 -3.5094 1.4935 26 9 7.6657 -2.8046 -0.6050 27 9 8.2559 -1.5571 1.2156 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4024 -0.9314 33 1 1.4887 1.6968 2.5459 34 1 3.0988 1.3604 3.2260 35 1 1.7314 3.9746 5.4297 36 1 4.2694 1.6889 -1.9896 37 1 5.3394 2.3684 -0.7219 38 1 6.0172 0.2852 -2.8760 39 1 6.9650 1.7279 -2.3824 40 1 7.6032 0.7328 -0.2881 41 1 7.6285 -0.6920 -1.3718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816802945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:14 Heat of formation + Delta-G solvation = -205.019780 kcal Electronic energy + Delta-G solvation = -30658.978746 eV Core-core repulsion = 25931.370764 eV Total energy + Delta-G solvation = -4727.607983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.55184 -49.05575 -49.02410 -42.00953 -40.26295 -38.55854 -37.27674 -35.14290 -33.76403 -33.23898 -31.31368 -29.36911 -28.79149 -26.98356 -25.60481 -24.50343 -22.62574 -22.29829 -21.09991 -20.51221 -20.00184 -19.77521 -19.16392 -18.68207 -18.46608 -17.87602 -17.08664 -16.57510 -16.24917 -16.04321 -15.97378 -15.83899 -15.77687 -15.55655 -15.44068 -15.19856 -15.12790 -14.92714 -14.61905 -14.44863 -14.21409 -14.10777 -14.04566 -13.56633 -13.29609 -13.12737 -12.90519 -12.73645 -12.57804 -12.27081 -12.23176 -12.20009 -11.84931 -11.71203 -11.65397 -10.91696 -10.65589 -10.36036 -10.05694 -9.52448 -8.22771 -6.38621 0.43703 0.65606 1.27311 1.36716 1.41528 1.48791 1.66238 1.76923 2.21872 2.35707 2.46723 2.77483 2.92887 3.07115 3.34236 3.42882 3.61205 3.88572 4.02564 4.07027 4.22726 4.33131 4.41633 4.52825 4.59355 4.74197 4.78545 4.93359 4.99302 5.02264 5.08532 5.18651 5.25472 5.48456 5.68951 5.72291 5.75882 5.90487 6.02997 6.18727 6.64243 6.72537 7.24381 7.39235 8.84954 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.004009 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.578437 B = 6983.009295 C = 7438.467780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.191 4.191 3 C 0.130 3.870 4 N -0.593 5.593 5 C 0.267 3.733 6 C -0.539 4.539 7 H 0.062 0.938 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.972 3.028 11 H -0.255 1.255 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.492 3.508 15 O -0.589 6.589 16 C 0.119 3.881 17 H 0.121 0.879 18 C -0.119 4.119 19 C -0.106 4.106 20 C 0.068 3.932 21 N -0.574 5.574 22 C 0.489 3.511 23 O -0.519 6.519 24 C 0.470 3.530 25 F -0.160 7.160 26 F -0.150 7.150 27 F -0.162 7.162 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.019 0.981 34 H -0.015 1.015 35 H 0.266 0.734 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -7.092 -21.392 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.211 4.211 3 C 0.008 3.992 4 N -0.323 5.323 5 C 0.146 3.854 6 C -0.577 4.577 7 H 0.080 0.920 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.795 3.205 11 H -0.179 1.179 12 H -0.208 1.208 13 H -0.202 1.202 14 C 0.279 3.721 15 O -0.469 6.469 16 C 0.013 3.987 17 H 0.139 0.861 18 C -0.157 4.157 19 C -0.144 4.144 20 C -0.052 4.052 21 N -0.306 5.306 22 C 0.270 3.730 23 O -0.394 6.394 24 C 0.412 3.588 25 F -0.141 7.141 26 F -0.131 7.131 27 F -0.143 7.143 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.037 0.963 34 H 0.003 0.997 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.690 -7.331 -20.369 22.974 hybrid contribution 0.165 0.397 1.454 1.516 sum 7.854 -6.934 -18.915 21.623 Atomic orbital electron populations 1.24054 0.95356 1.03008 0.97675 1.23327 0.97034 0.98224 1.02478 1.20973 0.92887 0.96173 0.89133 1.48145 1.11250 1.59645 1.13242 1.18665 0.93554 0.93062 0.80166 1.21644 1.40671 0.93785 1.01620 0.91981 1.25944 0.94588 1.04094 0.94774 1.70081 1.42859 1.38391 1.05860 0.85410 0.78568 0.78564 0.77923 1.17870 1.20783 1.20168 1.21403 0.81997 0.77814 0.90867 1.90646 1.54295 1.58120 1.43839 1.22010 0.89087 0.94621 0.92997 0.86104 1.22805 1.01849 0.94213 0.96875 1.22841 0.95176 1.00368 0.95982 1.23168 0.88796 0.99142 0.94079 1.48278 1.14476 1.21818 1.46053 1.20211 0.88948 0.82798 0.81059 1.90865 1.36708 1.67683 1.44115 1.19675 0.85076 0.78684 0.75342 1.93249 1.95400 1.52766 1.72715 1.93253 1.91658 1.90612 1.37573 1.93279 1.63793 1.71233 1.86023 0.86924 0.87592 0.88140 0.89571 0.86710 0.96317 0.99730 0.92493 0.84938 0.91217 0.86902 0.85908 0.90484 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 14.32 67.79 0.97 -3.08 16 2 C -0.19 -5.44 9.42 25.65 0.24 -5.20 16 3 C 0.13 3.98 5.47 85.63 0.47 4.44 16 4 N -0.59 -25.71 2.44 -830.50 -2.03 -27.74 16 5 C 0.27 14.94 5.16 85.63 0.44 15.38 16 6 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 7 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 8 C 0.00 0.27 5.46 84.65 0.46 0.74 16 9 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 10 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 11 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.49 21.12 6.10 87.66 0.53 21.65 16 15 O -0.59 -32.09 15.69 -3.03 -0.05 -32.13 16 16 C 0.12 3.35 2.35 44.59 0.10 3.46 16 17 H 0.12 2.97 6.62 -2.38 -0.02 2.95 16 18 C -0.12 -2.11 5.84 31.78 0.19 -1.93 16 19 C -0.11 -1.08 7.09 31.99 0.23 -0.86 16 20 C 0.07 1.20 6.21 86.86 0.54 1.74 16 21 N -0.57 -15.97 2.76 -792.18 -2.19 -18.16 16 22 C 0.49 16.27 6.78 87.66 0.59 16.87 16 23 O -0.52 -21.89 16.40 -3.02 -0.05 -21.94 16 24 C 0.47 12.77 2.92 71.24 0.21 12.98 16 25 F -0.16 -4.78 16.92 44.97 0.76 -4.02 16 26 F -0.15 -3.05 15.77 44.97 0.71 -2.34 16 27 F -0.16 -4.40 16.74 44.97 0.75 -3.64 16 28 H 0.11 2.39 8.06 -2.91 -0.02 2.36 16 29 H 0.11 2.50 7.84 -2.91 -0.02 2.47 16 30 H 0.10 2.96 7.78 -2.91 -0.02 2.94 16 31 H 0.09 2.71 7.72 -2.39 -0.02 2.69 16 32 H 0.12 2.47 5.16 -2.38 -0.01 2.45 16 33 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 34 H -0.02 -1.03 7.42 -2.39 -0.02 -1.05 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.13 1.41 7.11 -2.39 -0.02 1.39 16 37 H 0.07 1.60 7.84 -2.39 -0.02 1.58 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.41 6.47 -2.39 -0.02 1.39 16 Total: -1.00 -84.57 358.02 6.51 -78.06 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.07 Total: 7.24 kcal Atomic # 6 Polarization: 30.28 SS G_CDS: 5.22 Total: 35.49 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.93 Total: -103.30 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -0.10 Total: -54.08 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 2.22 Total: -9.99 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -84.57 6.51 -78.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816802945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.956 kcal (2) G-P(sol) polarization free energy of solvation -84.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds