Wall clock time and date at job start Tue Mar 31 2020 18:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46816 * 2 1 4 4 O 1.21308 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.46755 * 119.99702 * 180.02562 * 3 2 1 6 6 C 1.40121 * 120.09718 * 359.97438 * 5 3 2 7 7 C 1.36529 * 119.90399 * 179.74702 * 6 5 3 8 8 C 1.39336 * 120.09085 * 0.52739 * 7 6 5 9 9 N 1.38888 * 119.90244 * 179.76127 * 8 7 6 10 10 C 1.48723 * 111.01725 * 308.21552 * 9 8 7 11 11 C 1.54385 * 104.51860 * 158.96304 * 10 9 8 12 12 C 1.54257 * 105.14698 * 336.26822 * 11 10 9 13 13 O 1.42905 * 110.32153 * 118.84494 * 12 11 10 14 14 C 1.50697 * 110.32581 * 240.94911 * 12 11 10 15 15 H 1.07998 * 120.00485 * 118.54955 * 14 12 11 16 16 C 1.37877 * 119.99689 * 298.54969 * 14 12 11 17 17 N 1.31516 * 120.00274 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99916 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46920 * 60.00176 * 18 16 14 20 20 H 1.48499 * 109.46936 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47011 * 300.00061 * 18 16 14 22 22 C 1.48566 * 110.99860 * 63.72109 * 9 8 7 23 23 C 1.39287 * 120.19287 * 359.49607 * 8 7 6 24 24 N 1.48016 * 119.95164 * 180.25304 * 23 8 7 25 25 O 1.21796 * 119.99899 * 185.34645 * 24 23 8 26 26 O 1.21799 * 120.00013 * 5.34229 * 24 23 8 27 27 C 1.36565 * 120.09818 * 0.22312 * 23 8 7 28 28 H 1.09002 * 109.47108 * 60.00390 * 1 2 3 29 29 H 1.09004 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47397 * 300.00065 * 1 2 3 31 31 H 1.08997 * 109.47238 * 240.00440 * 2 1 3 32 32 H 1.09002 * 109.47108 * 119.99610 * 2 1 3 33 33 H 1.07997 * 120.04893 * 0.04338 * 6 5 3 34 34 H 1.07996 * 119.95471 * 180.29633 * 7 6 5 35 35 H 1.09002 * 110.39098 * 40.24100 * 10 9 8 36 36 H 1.08994 * 110.50953 * 277.74876 * 10 9 8 37 37 H 1.08995 * 110.32323 * 217.32335 * 11 10 9 38 38 H 1.08997 * 110.32088 * 95.21379 * 11 10 9 39 39 H 0.96696 * 114.00598 * 61.45408 * 13 12 11 40 40 H 0.97001 * 120.00380 * 179.97438 * 17 16 14 41 41 H 1.09004 * 110.40861 * 82.17818 * 22 9 8 42 42 H 1.09000 * 110.51198 * 319.78954 * 22 9 8 43 43 H 1.08001 * 120.04761 * 180.02562 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2439 2.3429 -0.0005 5 6 3.4751 1.6890 -0.0006 6 6 4.3875 0.6256 -0.0006 7 6 5.7289 0.8796 -0.0063 8 6 6.1911 2.1940 -0.0011 9 7 7.5565 2.4479 -0.0020 10 6 8.2395 1.6962 1.0844 11 6 9.7169 1.6317 0.6408 12 6 9.6849 1.7974 -0.8925 13 8 10.4073 2.9679 -1.2803 14 6 10.2656 0.5791 -1.5629 15 1 9.6541 -0.0161 -2.2249 16 6 11.5776 0.2241 -1.3311 17 7 12.3224 0.9491 -0.5253 18 14 12.2972 -1.2865 -2.1616 19 1 12.2249 -1.1226 -3.6357 20 1 13.7150 -1.4489 -1.7509 21 1 11.5238 -2.4884 -1.7587 22 6 8.1904 1.9471 -1.2488 23 6 5.2876 3.2542 -0.0006 24 7 5.7845 4.6485 -0.0007 25 8 4.9996 5.5746 0.0981 26 8 6.9781 4.8696 -0.0994 27 6 3.9442 3.0091 -0.0006 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0301 -0.3936 -0.0009 34 1 6.4328 0.0605 -0.0112 35 1 7.8243 0.6920 1.1705 36 1 8.1499 2.2280 2.0316 37 1 10.1508 0.6683 0.9085 38 1 10.2849 2.4421 1.0975 39 1 11.3440 2.9494 -1.0410 40 1 13.2453 0.6992 -0.3619 41 1 8.0623 2.6680 -2.0564 42 1 7.7684 0.9825 -1.5310 43 1 3.2444 3.8318 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826624331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:44 Heat of formation + Delta-G solvation = -43.061937 kcal Electronic energy + Delta-G solvation = -29268.683738 eV Core-core repulsion = 25089.955515 eV Total energy + Delta-G solvation = -4178.728223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92320 -40.59450 -39.59038 -37.78398 -36.07932 -35.01596 -33.51212 -32.22763 -32.17118 -31.43950 -28.88286 -28.20970 -26.57029 -25.56177 -24.41873 -23.06747 -22.61891 -20.85814 -20.27247 -19.65570 -18.61961 -18.18203 -17.34609 -17.10380 -16.86512 -16.29726 -16.19256 -15.88729 -15.12451 -14.94531 -14.66476 -14.63311 -14.12488 -13.75665 -13.56489 -13.26304 -12.77655 -12.74425 -12.52973 -12.43359 -12.14173 -11.89338 -11.71970 -11.59210 -11.40343 -11.18776 -11.10511 -10.81320 -10.78614 -10.72224 -10.62536 -10.54625 -10.16398 -10.04989 -9.87973 -9.43869 -9.10453 -8.70460 -8.37914 -8.15313 -6.32168 -4.42752 -0.14554 0.25498 1.41769 1.67283 1.96743 3.13133 3.14673 3.21602 3.23142 3.48376 3.77574 4.20049 4.28111 4.34081 4.52414 4.61822 4.64844 4.67223 4.85074 4.95403 5.08414 5.26310 5.34932 5.40397 5.50720 5.54794 5.56594 5.61219 5.65725 5.75386 5.80212 5.87784 6.01374 6.13505 6.34172 6.62914 6.69711 6.82743 7.00431 7.09227 7.26988 7.31539 7.41305 7.67292 8.02738 8.07818 8.59443 9.27036 9.49142 10.74221 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003405 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.458545 B = 8221.696246 C = 9707.628901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.169 4.169 3 C 0.400 3.600 4 O -0.447 6.447 5 C -0.191 4.191 6 C -0.017 4.017 7 C -0.170 4.170 8 C 0.202 3.798 9 N -0.478 5.478 10 C 0.035 3.965 11 C -0.119 4.119 12 C 0.260 3.740 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.061 3.939 23 C -0.044 4.044 24 N 0.024 4.976 25 O -0.209 6.209 26 O -0.074 6.074 27 C 0.002 3.998 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.573 -5.733 3.321 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.278 3.722 4 O -0.322 6.322 5 C -0.193 4.193 6 C -0.036 4.036 7 C -0.191 4.191 8 C 0.104 3.896 9 N -0.200 5.200 10 C -0.090 4.090 11 C -0.157 4.157 12 C 0.220 3.780 13 O -0.388 6.388 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.202 1.202 22 C -0.063 4.063 23 C -0.129 4.129 24 N 0.547 4.453 25 O -0.409 6.409 26 O -0.309 6.309 27 C -0.017 4.017 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.701 -5.085 3.242 18.700 hybrid contribution 1.141 -1.591 -0.210 1.969 sum -16.561 -6.676 3.032 18.111 Atomic orbital electron populations 1.21603 0.93311 1.02028 1.03259 1.21998 0.98682 0.95059 1.04931 1.22299 0.86924 0.91682 0.71342 1.90569 1.58043 1.47710 1.35852 1.20407 0.96017 0.92585 1.10265 1.21444 0.92484 0.99395 0.90259 1.21737 0.96848 0.97069 1.03399 1.19409 0.92833 0.90229 0.87109 1.63313 0.96748 1.53612 1.06321 1.23450 0.97298 0.94778 0.93511 1.22905 0.90874 1.02534 0.99429 1.19117 0.85461 0.84318 0.89134 1.86180 1.26566 1.41970 1.84092 1.21602 0.97271 1.10475 1.28878 0.92200 1.24986 0.96808 0.96946 0.94295 1.69689 1.08562 1.39115 1.35506 0.86531 0.78107 0.82551 0.80085 1.20020 1.21050 1.20207 1.23311 0.96007 0.97578 0.89393 1.20815 0.93640 0.82430 1.15977 1.43346 1.01309 1.02121 0.98521 1.94503 1.54000 1.36087 1.56277 1.94725 0.97770 1.90182 1.48270 1.20925 0.93203 0.98322 0.89271 0.91984 0.91811 0.91997 0.87971 0.88015 0.83446 0.82618 0.93694 0.90992 0.90413 0.91871 0.76906 0.92037 0.90089 0.92746 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.57 16 2 C -0.17 -0.99 5.02 -27.88 -0.14 -1.13 16 3 C 0.40 3.85 7.10 -30.87 -0.22 3.63 16 4 O -0.45 -5.74 15.96 5.53 0.09 -5.65 16 5 C -0.19 -2.00 5.87 -105.05 -0.62 -2.62 16 6 C -0.02 -0.15 9.41 -39.49 -0.37 -0.52 16 7 C -0.17 -1.98 8.00 -39.79 -0.32 -2.30 16 8 C 0.20 3.11 4.89 -83.87 -0.41 2.71 16 9 N -0.48 -8.74 3.25 -166.56 -0.54 -9.28 16 10 C 0.03 0.61 6.33 -2.09 -0.01 0.59 16 11 C -0.12 -2.52 5.54 -25.35 -0.14 -2.66 16 12 C 0.26 6.02 1.05 -90.39 -0.10 5.93 16 13 O -0.58 -14.78 12.94 -35.23 -0.46 -15.24 16 14 C -0.54 -13.42 8.08 -34.44 -0.28 -13.70 16 15 H 0.06 1.45 7.58 -52.49 -0.40 1.05 16 16 C 0.07 1.80 5.02 -17.82 -0.09 1.71 16 17 N -0.89 -22.40 10.81 55.43 0.60 -21.80 16 18 Si 0.90 19.35 29.54 -169.99 -5.02 14.33 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 C 0.06 1.22 5.64 -2.18 -0.01 1.21 16 23 C -0.04 -0.70 6.82 -80.16 -0.55 -1.25 16 24 N 0.02 0.45 4.45 33.86 0.15 0.60 16 25 O -0.21 -3.87 18.43 -29.46 -0.54 -4.41 16 26 O -0.07 -1.53 17.11 -29.46 -0.50 -2.03 16 27 C 0.00 0.03 9.05 -39.49 -0.36 -0.33 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.15 0.70 7.03 -52.49 -0.37 0.33 16 34 H 0.16 1.69 6.69 -52.49 -0.35 1.34 16 35 H 0.04 0.68 6.23 -51.93 -0.32 0.36 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.74 7.24 -51.93 -0.38 1.36 16 38 H 0.06 1.42 7.98 -51.93 -0.41 1.00 16 39 H 0.38 9.78 7.32 45.56 0.33 10.11 16 40 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 41 H 0.08 1.74 8.08 -51.93 -0.42 1.32 16 42 H 0.05 1.00 6.58 -51.93 -0.34 0.66 16 43 H 0.16 2.14 7.17 -52.49 -0.38 1.77 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -29.17 359.72 -8.77 -37.94 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.70 Total: 9.42 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -3.27 Total: -9.29 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.21 Total: -30.49 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.41 Total: -27.33 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.17 -8.77 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826624331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.123 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds