Wall clock time and date at job start Tue Mar 31 2020 18:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46816 * 2 1 4 4 O 1.21308 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.46755 * 119.99702 * 180.02562 * 3 2 1 6 6 C 1.40121 * 120.09718 * 359.97438 * 5 3 2 7 7 C 1.36529 * 119.90399 * 179.74702 * 6 5 3 8 8 C 1.39336 * 120.09085 * 0.52739 * 7 6 5 9 9 N 1.38888 * 119.90244 * 179.76127 * 8 7 6 10 10 C 1.48723 * 111.01725 * 308.21552 * 9 8 7 11 11 C 1.54385 * 104.51860 * 158.96304 * 10 9 8 12 12 C 1.54257 * 105.14698 * 336.26822 * 11 10 9 13 13 O 1.42905 * 110.32153 * 118.84494 * 12 11 10 14 14 C 1.50697 * 110.32581 * 240.94911 * 12 11 10 15 15 H 1.07998 * 120.00485 * 118.54955 * 14 12 11 16 16 C 1.37877 * 119.99689 * 298.54969 * 14 12 11 17 17 N 1.31516 * 120.00274 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99916 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46920 * 60.00176 * 18 16 14 20 20 H 1.48499 * 109.46936 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47011 * 300.00061 * 18 16 14 22 22 C 1.48566 * 110.99860 * 63.72109 * 9 8 7 23 23 C 1.39287 * 120.19287 * 359.49607 * 8 7 6 24 24 N 1.48016 * 119.95164 * 180.25304 * 23 8 7 25 25 O 1.21796 * 119.99899 * 185.34645 * 24 23 8 26 26 O 1.21799 * 120.00013 * 5.34229 * 24 23 8 27 27 C 1.36565 * 120.09818 * 0.22312 * 23 8 7 28 28 H 1.09002 * 109.47108 * 60.00390 * 1 2 3 29 29 H 1.09004 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47397 * 300.00065 * 1 2 3 31 31 H 1.08997 * 109.47238 * 240.00440 * 2 1 3 32 32 H 1.09002 * 109.47108 * 119.99610 * 2 1 3 33 33 H 1.07997 * 120.04893 * 0.04338 * 6 5 3 34 34 H 1.07996 * 119.95471 * 180.29633 * 7 6 5 35 35 H 1.09002 * 110.39098 * 40.24100 * 10 9 8 36 36 H 1.08994 * 110.50953 * 277.74876 * 10 9 8 37 37 H 1.08995 * 110.32323 * 217.32335 * 11 10 9 38 38 H 1.08997 * 110.32088 * 95.21379 * 11 10 9 39 39 H 0.96696 * 114.00598 * 61.45408 * 13 12 11 40 40 H 0.97001 * 120.00380 * 179.97438 * 17 16 14 41 41 H 1.09004 * 110.40861 * 82.17818 * 22 9 8 42 42 H 1.09000 * 110.51198 * 319.78954 * 22 9 8 43 43 H 1.08001 * 120.04761 * 180.02562 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2439 2.3429 -0.0005 5 6 3.4751 1.6890 -0.0006 6 6 4.3875 0.6256 -0.0006 7 6 5.7289 0.8796 -0.0063 8 6 6.1911 2.1940 -0.0011 9 7 7.5565 2.4479 -0.0020 10 6 8.2395 1.6962 1.0844 11 6 9.7169 1.6317 0.6408 12 6 9.6849 1.7974 -0.8925 13 8 10.4073 2.9679 -1.2803 14 6 10.2656 0.5791 -1.5629 15 1 9.6541 -0.0161 -2.2249 16 6 11.5776 0.2241 -1.3311 17 7 12.3224 0.9491 -0.5253 18 14 12.2972 -1.2865 -2.1616 19 1 12.2249 -1.1226 -3.6357 20 1 13.7150 -1.4489 -1.7509 21 1 11.5238 -2.4884 -1.7587 22 6 8.1904 1.9471 -1.2488 23 6 5.2876 3.2542 -0.0006 24 7 5.7845 4.6485 -0.0007 25 8 4.9996 5.5746 0.0981 26 8 6.9781 4.8696 -0.0994 27 6 3.9442 3.0091 -0.0006 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0301 -0.3936 -0.0009 34 1 6.4328 0.0605 -0.0112 35 1 7.8243 0.6920 1.1705 36 1 8.1499 2.2280 2.0316 37 1 10.1508 0.6683 0.9085 38 1 10.2849 2.4421 1.0975 39 1 11.3440 2.9494 -1.0410 40 1 13.2453 0.6992 -0.3619 41 1 8.0623 2.6680 -2.0564 42 1 7.7684 0.9825 -1.5310 43 1 3.2444 3.8318 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826624331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:43 Heat of formation + Delta-G solvation = -61.064008 kcal Electronic energy + Delta-G solvation = -29269.464366 eV Core-core repulsion = 25089.955515 eV Total energy + Delta-G solvation = -4179.508852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.24115 -41.68803 -40.67818 -39.07266 -37.52931 -36.62558 -34.21649 -34.14718 -33.06634 -32.72962 -30.20524 -29.85806 -27.70627 -26.99287 -25.69817 -24.07988 -23.63620 -22.17262 -21.42420 -21.28920 -19.72447 -19.49902 -18.97638 -18.47751 -18.08857 -17.34781 -17.29190 -16.84177 -16.51528 -16.27369 -15.81006 -15.77860 -15.45795 -15.11931 -14.64305 -14.43023 -14.02524 -13.89278 -13.81713 -13.29004 -13.23399 -13.15157 -13.08774 -12.85806 -12.59086 -12.51828 -12.48794 -12.38827 -12.24191 -12.23649 -12.13491 -11.99135 -11.82737 -11.15985 -10.92310 -10.84603 -10.58611 -10.25074 -10.11706 -9.62587 -8.18691 -6.36250 -1.28629 -0.77399 0.24253 0.43332 1.08116 1.44951 1.48362 1.54418 2.21430 2.38686 2.52985 2.75812 3.06993 3.31394 3.54974 3.62188 3.69029 3.75963 3.93948 4.04443 4.13288 4.18901 4.29674 4.31897 4.37644 4.51663 4.59573 4.67469 4.74941 4.79394 4.92601 5.02515 5.04719 5.09244 5.09263 5.13440 5.31109 5.33680 5.37066 5.51021 5.61476 5.80615 6.04172 6.20367 6.38582 6.58159 6.70611 7.36142 7.50911 8.86332 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003405 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.458545 B = 8221.696246 C = 9707.628901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.403 3.597 4 O -0.486 6.486 5 C -0.179 4.179 6 C 0.021 3.979 7 C -0.162 4.162 8 C 0.176 3.824 9 N -0.495 5.495 10 C 0.045 3.955 11 C -0.109 4.109 12 C 0.241 3.759 13 O -0.598 6.598 14 C -0.559 4.559 15 H 0.063 0.937 16 C 0.031 3.969 17 N -0.911 5.911 18 Si 0.960 3.040 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.073 3.927 23 C -0.060 4.060 24 N 0.028 4.972 25 O -0.204 6.204 26 O -0.140 6.140 27 C -0.007 4.007 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.208 0.792 34 H 0.174 0.826 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.374 0.626 40 H 0.269 0.731 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 -10.031 3.493 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C 0.282 3.718 4 O -0.363 6.363 5 C -0.181 4.181 6 C 0.003 3.997 7 C -0.183 4.183 8 C 0.078 3.922 9 N -0.217 5.217 10 C -0.080 4.080 11 C -0.148 4.148 12 C 0.201 3.799 13 O -0.406 6.406 14 C -0.597 4.597 15 H 0.081 0.919 16 C -0.170 4.170 17 N -0.550 5.550 18 Si 0.785 3.215 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.051 4.051 23 C -0.145 4.145 24 N 0.544 4.456 25 O -0.410 6.410 26 O -0.361 6.361 27 C -0.026 4.026 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.225 0.775 34 H 0.192 0.808 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.223 0.777 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.113 -9.390 3.413 22.458 hybrid contribution 1.691 -0.273 -0.260 1.732 sum -18.423 -9.663 3.153 21.041 Atomic orbital electron populations 1.21637 0.94096 1.03022 1.01824 1.22139 0.97991 0.92052 1.07831 1.22927 0.85829 0.93297 0.69701 1.90583 1.58678 1.49406 1.37680 1.20769 0.97358 0.91627 1.08358 1.21996 0.90525 1.01434 0.85782 1.21942 0.98594 0.95245 1.02478 1.19484 0.91109 0.91811 0.89772 1.63011 0.98726 1.54535 1.05381 1.23348 0.94630 0.96611 0.93386 1.22646 0.93399 1.00598 0.98153 1.19457 0.86906 0.83200 0.90297 1.86187 1.26260 1.43629 1.84514 1.21872 0.97792 1.10985 1.29094 0.91897 1.25682 0.97168 0.99372 0.94760 1.69799 1.08601 1.40249 1.36335 0.85589 0.77275 0.79941 0.78654 1.20429 1.21273 1.18811 1.23063 0.94422 0.97852 0.89790 1.20941 0.94716 0.80244 1.18566 1.43813 1.00883 1.03494 0.97394 1.94449 1.53673 1.37695 1.55174 1.94728 0.98722 1.91060 1.51638 1.21024 0.91822 0.99949 0.89831 0.93586 0.89527 0.93468 0.84841 0.84674 0.77475 0.80829 0.90447 0.90466 0.91733 0.94441 0.77712 0.92172 0.92582 0.90640 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.20 71.98 0.66 -0.65 16 2 C -0.16 -0.92 5.02 29.85 0.15 -0.77 16 3 C 0.40 6.16 7.10 27.92 0.20 6.36 16 4 O -0.49 -11.64 15.96 -3.12 -0.05 -11.69 16 5 C -0.18 -3.03 5.87 -20.14 -0.12 -3.15 16 6 C 0.02 0.23 9.41 22.33 0.21 0.44 16 7 C -0.16 -3.04 8.00 22.13 0.18 -2.86 16 8 C 0.18 5.15 4.89 38.54 0.19 5.34 16 9 N -0.49 -18.12 3.25 -680.88 -2.21 -20.33 16 10 C 0.05 1.55 6.33 86.42 0.55 2.09 16 11 C -0.11 -4.74 5.54 31.49 0.17 -4.56 16 12 C 0.24 11.43 1.05 -10.65 -0.01 11.42 16 13 O -0.60 -32.14 12.94 -148.98 -1.93 -34.06 16 14 C -0.56 -27.62 8.08 25.60 0.21 -27.41 16 15 H 0.06 2.99 7.58 -2.91 -0.02 2.97 16 16 C 0.03 1.54 5.02 84.65 0.43 1.97 16 17 N -0.91 -46.78 10.81 21.45 0.23 -46.55 16 18 Si 0.96 39.23 29.54 68.60 2.03 41.26 16 19 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 C 0.07 2.96 5.64 86.45 0.49 3.45 16 23 C -0.06 -1.88 6.82 36.24 0.25 -1.63 16 24 N 0.03 1.10 4.45 -46.79 -0.21 0.90 16 25 O -0.20 -7.89 18.43 18.89 0.35 -7.54 16 26 O -0.14 -6.22 17.11 18.89 0.32 -5.90 16 27 C -0.01 -0.17 9.05 22.33 0.20 0.04 16 28 H 0.04 0.55 8.10 -2.39 -0.02 0.53 16 29 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.05 0.55 8.10 -2.39 -0.02 0.54 16 31 H 0.13 0.05 8.08 -2.39 -0.02 0.03 16 32 H 0.14 -0.01 8.08 -2.39 -0.02 -0.03 16 33 H 0.21 -0.02 7.03 -2.91 -0.02 -0.04 16 34 H 0.17 2.75 6.69 -2.91 -0.02 2.73 16 35 H 0.08 2.11 6.23 -2.39 -0.01 2.10 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.92 7.24 -2.39 -0.02 2.90 16 38 H 0.04 1.76 7.98 -2.39 -0.02 1.74 16 39 H 0.37 20.39 7.32 -74.06 -0.54 19.85 16 40 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 41 H 0.06 2.51 8.08 -2.38 -0.02 2.49 16 42 H 0.08 2.66 6.58 -2.39 -0.02 2.64 16 43 H 0.15 4.07 7.17 -2.91 -0.02 4.05 16 Total: -1.00 -70.01 359.72 2.80 -67.21 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.52 Total: 26.64 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 3.75 Total: -9.93 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -2.19 Total: -65.98 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -1.31 Total: -59.19 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -70.01 2.80 -67.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826624331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.141 kcal (2) G-P(sol) polarization free energy of solvation -70.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds