Wall clock time and date at job start Tue Mar 31 2020 17:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 C 1.53001 * 109.46956 * 239.99644 * 2 1 3 5 5 N 1.46498 * 109.46840 * 119.99840 * 2 1 3 6 6 N 1.40444 * 126.82558 * 232.36712 * 5 2 1 7 7 C 1.30712 * 106.79511 * 180.25856 * 6 5 2 8 8 N 1.33242 * 108.94383 * 359.75361 * 7 6 5 9 9 C 1.30826 * 109.83006 * 359.97438 * 8 7 6 10 10 C 1.50708 * 125.96118 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46901 * 90.05831 * 10 9 8 12 12 C 1.34777 * 119.99887 * 179.97438 * 11 10 9 13 13 O 1.21753 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.46237 * 119.99910 * 180.02562 * 12 11 10 15 15 S 1.75667 * 125.23009 * 0.08199 * 14 12 11 16 16 C 1.75474 * 92.09246 * 180.22186 * 15 14 12 17 17 C 1.32758 * 111.36080 * 359.83058 * 16 15 14 18 18 C 1.39544 * 125.22636 * 180.02562 * 14 12 11 19 19 C 1.40536 * 123.71881 * 359.97438 * 18 14 12 20 20 H 1.08006 * 119.99685 * 356.99658 * 19 18 14 21 21 C 1.40298 * 120.00526 * 176.99445 * 19 18 14 22 22 N 1.30642 * 120.00509 * 213.45218 * 21 19 18 23 23 Si 1.86802 * 120.00038 * 33.45016 * 21 19 18 24 24 H 1.48495 * 109.47362 * 264.88780 * 23 21 19 25 25 H 1.48500 * 109.46860 * 24.88926 * 23 21 19 26 26 H 1.48503 * 109.47208 * 144.88249 * 23 21 19 27 27 H 1.09008 * 109.46609 * 300.00484 * 1 2 3 28 28 H 1.08998 * 109.46587 * 59.99812 * 1 2 3 29 29 H 1.08999 * 109.47430 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46321 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46812 * 299.99518 * 3 2 1 32 32 H 1.09000 * 109.46932 * 60.00267 * 3 2 1 33 33 H 1.08997 * 109.47272 * 307.71184 * 4 2 1 34 34 H 1.09005 * 109.46536 * 67.70730 * 4 2 1 35 35 H 1.08995 * 109.47118 * 187.70497 * 4 2 1 36 36 H 1.08004 * 125.52745 * 179.70921 * 7 6 5 37 37 H 1.08994 * 109.46915 * 330.06439 * 10 9 8 38 38 H 1.08995 * 109.47161 * 210.05710 * 10 9 8 39 39 H 0.97003 * 119.99934 * 0.02562 * 11 10 9 40 40 H 1.07997 * 124.31530 * 179.86865 * 16 15 14 41 41 H 1.08004 * 122.78495 * 180.02562 * 17 16 15 42 42 H 0.97004 * 120.00011 * 354.97881 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 2.9461 -0.2020 2.1305 7 6 3.1018 -1.1357 3.0319 8 7 2.3251 -2.1723 2.7196 9 6 1.6646 -1.9164 1.6196 10 6 0.6836 -2.8380 0.9418 11 7 -0.6619 -2.5891 1.4651 12 6 -1.7079 -3.3014 1.0012 13 8 -1.5344 -4.1520 0.1475 14 6 -3.0510 -3.0525 1.5232 15 16 -3.4572 -1.8621 2.7495 16 6 -5.1564 -2.2972 2.7009 17 6 -5.3829 -3.2643 1.8200 18 6 -4.2072 -3.7235 1.1230 19 6 -4.2233 -4.7387 0.1512 20 1 -3.3134 -5.0055 -0.3660 21 6 -5.4210 -5.4056 -0.1470 22 7 -5.3997 -6.6677 -0.4835 23 14 -7.0464 -4.4888 -0.0629 24 1 -7.6710 -4.7094 1.2661 25 1 -6.8067 -3.0369 -0.2624 26 1 -7.9537 -4.9912 -1.1258 27 1 -0.3633 0.5140 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 1.5685 -1.7014 -1.3208 34 1 1.7935 -0.1341 -2.1338 35 1 3.1212 -0.8422 -1.1830 36 1 3.7548 -1.0769 3.8901 37 1 0.9633 -3.8732 1.1366 38 1 0.6952 -2.6544 -0.1326 39 1 -0.8001 -1.9111 2.1450 40 1 -5.9205 -1.8366 3.3095 41 1 -6.3663 -3.6731 1.6403 42 1 -4.5519 -7.1249 -0.5981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868081734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:55 Heat of formation + Delta-G solvation = 78.178877 kcal Electronic energy + Delta-G solvation = -26629.954301 eV Core-core repulsion = 22931.529096 eV Total energy + Delta-G solvation = -3698.425205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28497 -38.53217 -37.34160 -36.37116 -34.25478 -33.54875 -31.42997 -31.11176 -29.22708 -27.80070 -27.58238 -27.36136 -25.56058 -22.99341 -21.89472 -21.20612 -20.64758 -19.70447 -19.27851 -18.05466 -16.62731 -16.56019 -15.92183 -15.46577 -15.18930 -14.97715 -14.78942 -14.35769 -14.06420 -13.88585 -13.45249 -13.28915 -13.21117 -12.86290 -12.61723 -12.50043 -12.34238 -12.32066 -11.99871 -11.97166 -11.93827 -11.68471 -11.52191 -11.28049 -10.90685 -10.85815 -10.42963 -10.04206 -9.95977 -9.79120 -9.68516 -9.51288 -9.26603 -8.50398 -8.47594 -7.81078 -7.74311 -7.49234 -4.69828 1.49807 1.93370 2.15160 2.80670 2.83829 2.88098 3.03802 3.23858 3.48502 3.54953 3.66719 3.90277 4.18341 4.18901 4.26635 4.50148 4.60601 4.71401 4.84971 5.01958 5.25620 5.32197 5.41697 5.45245 5.50602 5.56681 5.64347 5.70321 5.75188 5.86992 5.94263 5.98188 6.11659 6.31594 6.43179 6.58589 6.76251 6.83294 6.96951 7.09551 7.14936 7.38572 8.01699 8.09306 8.22767 8.35832 8.63591 9.43682 9.49328 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003390 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.250268 B = 8256.668362 C = 8504.171274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.175 3.825 3 C -0.140 4.140 4 C -0.165 4.165 5 N -0.356 5.356 6 N -0.318 5.318 7 C 0.191 3.809 8 N -0.531 5.531 9 C 0.270 3.730 10 C 0.204 3.796 11 N -0.745 5.745 12 C 0.604 3.396 13 O -0.566 6.566 14 C -0.452 4.452 15 S -0.029 6.029 16 C -0.168 4.168 17 C -0.169 4.169 18 C 0.111 3.889 19 C -0.421 4.421 20 H 0.123 0.877 21 C 0.037 3.963 22 N -0.753 5.753 23 Si 1.070 2.930 24 H -0.270 1.270 25 H -0.260 1.260 26 H -0.282 1.282 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.216 0.784 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.393 0.607 40 H 0.144 0.856 41 H 0.121 0.879 42 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 11.678 0.253 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.092 3.908 3 C -0.198 4.198 4 C -0.223 4.223 5 N -0.148 5.148 6 N -0.145 5.145 7 C -0.112 4.112 8 N -0.259 5.259 9 C -0.006 4.006 10 C 0.078 3.922 11 N -0.401 5.401 12 C 0.403 3.597 13 O -0.450 6.450 14 C -0.570 4.570 15 S 0.226 5.774 16 C -0.302 4.302 17 C -0.202 4.202 18 C 0.101 3.899 19 C -0.450 4.450 20 H 0.140 0.860 21 C -0.192 4.192 22 N -0.372 5.372 23 Si 0.896 3.104 24 H -0.198 1.198 25 H -0.185 1.185 26 H -0.209 1.209 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.693 12.233 0.386 14.456 hybrid contribution 0.778 -0.596 -0.108 0.986 sum 8.470 11.637 0.277 14.396 Atomic orbital electron populations 1.22579 0.91396 1.05831 1.03695 1.20937 0.95208 0.93556 0.81102 1.21905 1.02275 0.92607 1.02979 1.22358 1.02044 1.01729 0.96127 1.50740 1.31483 1.12560 1.20025 1.77962 1.10832 1.23232 1.02505 1.25958 0.98722 0.87301 0.99202 1.70520 1.12339 1.29190 1.13824 1.24320 0.97325 0.86620 0.92384 1.19560 0.79747 0.96514 0.96412 1.45865 1.05244 1.43235 1.45728 1.16717 0.82287 0.79815 0.80880 1.90640 1.84699 1.35203 1.34441 1.21938 0.95320 1.19103 1.20629 1.82831 1.02271 1.45031 1.47226 1.24930 0.99077 1.02648 1.03584 1.21493 0.98860 0.99945 0.99938 1.17755 0.88510 0.91064 0.92544 1.21314 0.98763 1.10804 1.14136 0.85978 1.27783 1.05649 0.94726 0.91013 1.70465 1.33612 1.08272 1.24847 0.83768 0.72721 0.76829 0.77084 1.19750 1.18469 1.20945 0.91536 0.89881 0.89273 0.91351 0.90739 0.91495 0.90996 0.89782 0.91665 0.76768 0.88687 0.89746 0.77374 0.83805 0.86222 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.29 37.16 0.31 -1.82 16 2 C 0.18 1.97 1.06 -131.81 -0.14 1.83 16 3 C -0.14 -1.34 8.05 37.16 0.30 -1.04 16 4 C -0.16 -1.63 8.54 37.16 0.32 -1.31 16 5 N -0.36 -4.87 3.46 -45.70 -0.16 -5.03 16 6 N -0.32 -4.43 11.82 29.29 0.35 -4.08 16 7 C 0.19 2.56 13.03 -91.81 -1.20 1.36 16 8 N -0.53 -8.42 11.19 -11.97 -0.13 -8.55 16 9 C 0.27 4.14 6.92 -155.69 -1.08 3.06 16 10 C 0.20 3.33 4.98 -5.19 -0.03 3.30 16 11 N -0.74 -13.89 3.93 -62.94 -0.25 -14.14 16 12 C 0.60 13.99 7.76 -13.05 -0.10 13.89 16 13 O -0.57 -14.73 14.28 5.14 0.07 -14.65 16 14 C -0.45 -10.80 6.51 -35.88 -0.23 -11.03 16 15 S -0.03 -0.59 22.25 -107.50 -2.39 -2.98 16 16 C -0.17 -3.31 11.07 28.86 0.32 -2.99 16 17 C -0.17 -3.74 8.19 -39.12 -0.32 -4.06 16 18 C 0.11 2.79 5.69 -106.21 -0.60 2.18 16 19 C -0.42 -11.04 9.04 -37.94 -0.34 -11.39 16 20 H 0.12 3.51 5.71 -52.48 -0.30 3.21 16 21 C 0.04 0.89 5.43 -17.28 -0.09 0.80 16 22 N -0.75 -18.51 13.64 55.57 0.76 -17.75 16 23 Si 1.07 21.31 24.88 -169.99 -4.23 17.08 16 24 H -0.27 -5.03 6.68 56.52 0.38 -4.65 16 25 H -0.26 -5.05 6.81 56.52 0.38 -4.67 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 27 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.29 4.08 -51.93 -0.21 1.08 16 30 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.78 5.83 -51.93 -0.30 0.47 16 34 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.22 1.99 8.06 -52.48 -0.42 1.56 16 37 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.08 1.29 4.77 -51.93 -0.25 1.04 16 39 H 0.39 7.09 7.54 -40.82 -0.31 6.79 16 40 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.12 2.48 2.84 -52.48 -0.15 2.33 16 42 H 0.30 7.31 8.73 -40.82 -0.36 6.95 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -29.38 351.33 -8.52 -37.90 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -4.94 Total: 14.11 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.89 Total: -7.19 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.57 Total: -49.56 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.23 Total: 17.08 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.39 Total: -2.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.38 -8.52 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868081734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.075 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds