Wall clock time and date at job start Tue Mar 31 2020 17:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 C 1.53001 * 109.46956 * 239.99644 * 2 1 3 5 5 N 1.46498 * 109.46840 * 119.99840 * 2 1 3 6 6 N 1.40444 * 126.82558 * 232.36712 * 5 2 1 7 7 C 1.30712 * 106.79511 * 180.25856 * 6 5 2 8 8 N 1.33242 * 108.94383 * 359.75361 * 7 6 5 9 9 C 1.30826 * 109.83006 * 359.97438 * 8 7 6 10 10 C 1.50708 * 125.96118 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46901 * 90.05831 * 10 9 8 12 12 C 1.34777 * 119.99887 * 179.97438 * 11 10 9 13 13 O 1.21753 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.46237 * 119.99910 * 180.02562 * 12 11 10 15 15 S 1.75667 * 125.23009 * 0.08199 * 14 12 11 16 16 C 1.75474 * 92.09246 * 180.22186 * 15 14 12 17 17 C 1.32758 * 111.36080 * 359.83058 * 16 15 14 18 18 C 1.39544 * 125.22636 * 180.02562 * 14 12 11 19 19 C 1.40536 * 123.71881 * 359.97438 * 18 14 12 20 20 H 1.08006 * 119.99685 * 356.99658 * 19 18 14 21 21 C 1.40298 * 120.00526 * 176.99445 * 19 18 14 22 22 N 1.30642 * 120.00509 * 213.45218 * 21 19 18 23 23 Si 1.86802 * 120.00038 * 33.45016 * 21 19 18 24 24 H 1.48495 * 109.47362 * 264.88780 * 23 21 19 25 25 H 1.48500 * 109.46860 * 24.88926 * 23 21 19 26 26 H 1.48503 * 109.47208 * 144.88249 * 23 21 19 27 27 H 1.09008 * 109.46609 * 300.00484 * 1 2 3 28 28 H 1.08998 * 109.46587 * 59.99812 * 1 2 3 29 29 H 1.08999 * 109.47430 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46321 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46812 * 299.99518 * 3 2 1 32 32 H 1.09000 * 109.46932 * 60.00267 * 3 2 1 33 33 H 1.08997 * 109.47272 * 307.71184 * 4 2 1 34 34 H 1.09005 * 109.46536 * 67.70730 * 4 2 1 35 35 H 1.08995 * 109.47118 * 187.70497 * 4 2 1 36 36 H 1.08004 * 125.52745 * 179.70921 * 7 6 5 37 37 H 1.08994 * 109.46915 * 330.06439 * 10 9 8 38 38 H 1.08995 * 109.47161 * 210.05710 * 10 9 8 39 39 H 0.97003 * 119.99934 * 0.02562 * 11 10 9 40 40 H 1.07997 * 124.31530 * 179.86865 * 16 15 14 41 41 H 1.08004 * 122.78495 * 180.02562 * 17 16 15 42 42 H 0.97004 * 120.00011 * 354.97881 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 2.9461 -0.2020 2.1305 7 6 3.1018 -1.1357 3.0319 8 7 2.3251 -2.1723 2.7196 9 6 1.6646 -1.9164 1.6196 10 6 0.6836 -2.8380 0.9418 11 7 -0.6619 -2.5891 1.4651 12 6 -1.7079 -3.3014 1.0012 13 8 -1.5344 -4.1520 0.1475 14 6 -3.0510 -3.0525 1.5232 15 16 -3.4572 -1.8621 2.7495 16 6 -5.1564 -2.2972 2.7009 17 6 -5.3829 -3.2643 1.8200 18 6 -4.2072 -3.7235 1.1230 19 6 -4.2233 -4.7387 0.1512 20 1 -3.3134 -5.0055 -0.3660 21 6 -5.4210 -5.4056 -0.1470 22 7 -5.3997 -6.6677 -0.4835 23 14 -7.0464 -4.4888 -0.0629 24 1 -7.6710 -4.7094 1.2661 25 1 -6.8067 -3.0369 -0.2624 26 1 -7.9537 -4.9912 -1.1258 27 1 -0.3633 0.5140 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 1.5685 -1.7014 -1.3208 34 1 1.7935 -0.1341 -2.1338 35 1 3.1212 -0.8422 -1.1830 36 1 3.7548 -1.0769 3.8901 37 1 0.9633 -3.8732 1.1366 38 1 0.6952 -2.6544 -0.1326 39 1 -0.8001 -1.9111 2.1450 40 1 -5.9205 -1.8366 3.3095 41 1 -6.3663 -3.6731 1.6403 42 1 -4.5519 -7.1249 -0.5981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868081734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:55 Heat of formation + Delta-G solvation = 60.462722 kcal Electronic energy + Delta-G solvation = -26630.722531 eV Core-core repulsion = 22931.529096 eV Total energy + Delta-G solvation = -3699.193435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.40460 -40.29823 -38.38214 -38.04154 -35.87055 -35.33891 -32.69511 -32.24490 -30.93235 -29.12968 -28.52302 -28.41697 -27.15848 -24.08191 -23.57143 -22.50507 -22.16536 -21.14945 -20.79239 -19.65263 -18.29024 -17.72242 -17.16811 -16.80602 -16.64732 -16.39731 -16.33272 -15.68788 -15.13389 -15.09623 -15.05092 -14.88054 -14.57300 -14.12001 -14.07125 -13.72500 -13.57408 -13.43340 -13.40098 -13.24541 -13.03493 -12.88616 -12.84185 -12.59227 -12.41956 -12.08131 -11.86493 -11.71651 -11.26985 -11.09862 -10.96359 -10.91041 -10.74824 -10.34257 -10.14513 -9.65272 -9.56507 -9.17530 -6.58257 0.20794 0.33165 1.11188 1.20142 1.23750 1.43297 1.67046 1.73115 1.75743 1.82471 2.06578 2.41527 2.49566 2.88514 3.12671 3.26201 3.61068 3.63154 3.75507 3.83097 4.16864 4.24612 4.35170 4.38123 4.48441 4.50768 4.60712 4.64873 4.72327 4.75353 4.88023 5.02118 5.09372 5.11406 5.16057 5.20782 5.28822 5.32697 5.41160 5.42546 5.55859 5.69309 6.14961 6.31307 6.54739 6.82276 6.97606 7.60661 7.61727 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003390 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.250268 B = 8256.668362 C = 8504.171274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.167 3.833 3 C -0.133 4.133 4 C -0.162 4.162 5 N -0.350 5.350 6 N -0.322 5.322 7 C 0.190 3.810 8 N -0.556 5.556 9 C 0.260 3.740 10 C 0.210 3.790 11 N -0.726 5.726 12 C 0.599 3.401 13 O -0.603 6.603 14 C -0.483 4.483 15 S 0.022 5.978 16 C -0.146 4.146 17 C -0.203 4.203 18 C 0.098 3.902 19 C -0.465 4.465 20 H 0.079 0.921 21 C 0.011 3.989 22 N -0.774 5.774 23 Si 1.103 2.897 24 H -0.241 1.241 25 H -0.251 1.251 26 H -0.272 1.272 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.252 0.748 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.398 0.602 40 H 0.194 0.806 41 H 0.137 0.863 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 14.833 1.619 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.085 3.915 3 C -0.190 4.190 4 C -0.219 4.219 5 N -0.142 5.142 6 N -0.150 5.150 7 C -0.112 4.112 8 N -0.284 5.284 9 C -0.017 4.017 10 C 0.084 3.916 11 N -0.381 5.381 12 C 0.397 3.603 13 O -0.490 6.490 14 C -0.601 4.601 15 S 0.279 5.721 16 C -0.281 4.281 17 C -0.236 4.236 18 C 0.088 3.912 19 C -0.494 4.494 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.392 5.392 23 Si 0.922 3.078 24 H -0.167 1.167 25 H -0.176 1.176 26 H -0.199 1.199 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.232 0.768 40 H 0.211 0.789 41 H 0.153 0.847 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.080 15.413 1.770 17.054 hybrid contribution 1.212 -1.433 -0.456 1.931 sum 8.292 13.980 1.314 16.307 Atomic orbital electron populations 1.22531 0.91964 1.04128 1.04475 1.21240 0.94773 0.94757 0.80698 1.21883 1.02084 0.91146 1.03897 1.22360 1.01808 1.01267 0.96507 1.50956 1.30920 1.11940 1.20367 1.77949 1.10897 1.23499 1.02635 1.26686 0.98413 0.86213 0.99888 1.70494 1.13134 1.30546 1.14260 1.23908 0.97695 0.87283 0.92836 1.19488 0.78767 0.96271 0.97082 1.45571 1.05413 1.42099 1.44978 1.16907 0.83292 0.79613 0.80482 1.90628 1.85478 1.36829 1.36037 1.22489 0.95582 1.20197 1.21812 1.82566 1.02549 1.42496 1.44527 1.25536 0.99759 1.00738 1.02047 1.21529 0.98577 1.01918 1.01539 1.18163 0.90423 0.90529 0.92126 1.21131 0.98306 1.13515 1.16496 0.90315 1.29028 1.08152 0.94513 0.89538 1.70552 1.32731 1.08909 1.27049 0.83422 0.69407 0.76153 0.78860 1.16686 1.17552 1.19886 0.92197 0.87677 0.92047 0.91526 0.88044 0.92343 0.92502 0.87138 0.91638 0.73254 0.90077 0.88871 0.76786 0.78901 0.84664 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.29 71.98 0.60 -3.35 16 2 C 0.17 3.52 1.06 3.61 0.00 3.52 16 3 C -0.13 -2.20 8.05 71.98 0.58 -1.62 16 4 C -0.16 -2.97 8.54 71.98 0.61 -2.36 16 5 N -0.35 -9.21 3.46 -298.49 -1.03 -10.25 16 6 N -0.32 -8.45 11.82 -61.24 -0.72 -9.17 16 7 C 0.19 4.77 13.03 180.77 2.36 7.13 16 8 N -0.56 -17.26 11.19 -191.77 -2.15 -19.41 16 9 C 0.26 7.91 6.92 138.23 0.96 8.86 16 10 C 0.21 7.07 4.98 85.64 0.43 7.50 16 11 N -0.73 -27.65 3.93 -471.22 -1.85 -29.50 16 12 C 0.60 28.77 7.76 86.32 0.67 29.44 16 13 O -0.60 -33.49 14.28 -4.52 -0.06 -33.55 16 14 C -0.48 -23.27 6.51 24.66 0.16 -23.11 16 15 S 0.02 0.82 22.25 -56.49 -1.26 -0.43 16 16 C -0.15 -5.19 11.07 66.64 0.74 -4.45 16 17 C -0.20 -8.55 8.19 22.61 0.19 -8.36 16 18 C 0.10 4.98 5.69 -20.89 -0.12 4.86 16 19 C -0.46 -25.74 9.04 23.33 0.21 -25.53 16 20 H 0.08 4.94 5.71 -2.91 -0.02 4.93 16 21 C 0.01 0.54 5.43 85.37 0.46 1.00 16 22 N -0.77 -39.87 13.64 21.89 0.30 -39.57 16 23 Si 1.10 41.95 24.88 68.60 1.71 43.66 16 24 H -0.24 -8.06 6.68 99.48 0.66 -7.39 16 25 H -0.25 -9.16 6.81 99.48 0.68 -8.48 16 26 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 27 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.77 4.08 -2.39 -0.01 1.76 16 30 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.22 5.83 -2.39 -0.01 1.21 16 34 H 0.11 1.43 8.13 -2.38 -0.02 1.41 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.25 3.98 8.06 -2.91 -0.02 3.96 16 37 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.09 2.98 4.77 -2.39 -0.01 2.97 16 39 H 0.40 14.29 7.54 -92.71 -0.70 13.59 16 40 H 0.19 4.91 8.06 -2.91 -0.02 4.88 16 41 H 0.14 5.21 2.84 -2.91 -0.01 5.21 16 42 H 0.29 15.13 8.73 -92.70 -0.81 14.32 16 Total: -1.00 -67.79 351.33 3.05 -64.74 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.28 Total: 39.96 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 7.84 Total: -6.46 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -5.45 Total: -107.91 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.06 Total: -33.55 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.71 Total: 43.66 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.26 Total: -0.43 kcal Total: -67.79 3.05 -64.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868081734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.199 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds