Wall clock time and date at job start Tue Mar 31 2020 18:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.65448 * 2 1 4 4 N 1.47311 * 110.60076 * 237.08830 * 2 1 3 5 5 C 1.34520 * 106.61815 * 241.47626 * 4 2 1 6 6 O 1.21532 * 123.77247 * 180.02562 * 5 4 2 7 7 N 1.33795 * 112.46104 * 359.74332 * 5 4 2 8 8 C 1.46500 * 124.18318 * 180.30664 * 7 5 4 9 9 C 1.52994 * 109.47099 * 270.14792 * 8 7 5 10 10 H 1.09007 * 109.47300 * 60.00139 * 9 8 7 11 11 O 1.42900 * 109.47577 * 300.00069 * 9 8 7 12 12 C 1.52998 * 109.47296 * 179.97438 * 9 8 7 13 13 O 1.42895 * 109.47477 * 185.00570 * 12 9 8 14 14 C 1.35679 * 117.00034 * 180.02562 * 13 12 9 15 15 C 1.39317 * 119.81815 * 359.71895 * 14 13 12 16 16 C 1.36437 * 120.18238 * 179.76390 * 15 14 13 17 17 C 1.40833 * 119.81487 * 0.50972 * 16 15 14 18 18 C 1.41208 * 120.17864 * 179.76431 * 17 16 15 19 19 H 1.07995 * 120.00511 * 24.52702 * 18 17 16 20 20 C 1.39895 * 119.99806 * 204.52570 * 18 17 16 21 21 N 1.30883 * 119.99976 * 17.94144 * 20 18 17 22 22 Si 1.86802 * 119.99803 * 197.94659 * 20 18 17 23 23 H 1.48495 * 109.47258 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46967 * 120.00161 * 22 20 18 25 25 H 1.48500 * 109.46840 * 239.99522 * 22 20 18 26 26 C 1.40833 * 119.64067 * 359.74563 * 17 16 15 27 27 C 1.36443 * 119.81065 * 359.97438 * 26 17 16 28 28 C 1.34770 * 111.64017 * 0.43983 * 7 5 4 29 29 O 1.21239 * 127.16021 * 179.85122 * 28 7 5 30 30 H 1.08999 * 109.46988 * 297.09100 * 1 2 3 31 31 H 1.08998 * 109.46979 * 57.08199 * 1 2 3 32 32 H 1.08995 * 109.47079 * 177.08371 * 1 2 3 33 33 H 0.96998 * 126.68912 * 61.44686 * 4 2 1 34 34 H 1.08997 * 109.47128 * 30.15056 * 8 7 5 35 35 H 1.09001 * 109.46989 * 150.15157 * 8 7 5 36 36 H 0.96700 * 113.99289 * 299.99984 * 11 9 8 37 37 H 1.09008 * 109.47182 * 305.00286 * 12 9 8 38 38 H 1.09005 * 109.46974 * 64.99712 * 12 9 8 39 39 H 1.08001 * 119.90722 * 0.02562 * 15 14 13 40 40 H 1.08007 * 120.09161 * 180.25504 * 16 15 14 41 41 H 0.97003 * 119.99584 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.09709 * 180.02562 * 26 17 16 43 43 H 1.08001 * 119.90493 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 7 2.0484 -0.7492 -1.1576 5 6 2.7599 -1.7780 -0.6627 6 8 3.3291 -2.6000 -1.3536 7 7 2.7760 -1.7917 0.6750 8 6 3.4789 -2.7943 1.4795 9 6 2.5415 -3.9699 1.7622 10 1 2.2249 -4.4170 0.8198 11 8 1.3952 -3.5040 2.4770 12 6 3.2757 -5.0172 2.6018 13 8 2.4412 -6.1653 2.7675 14 6 2.9462 -7.1942 3.4935 15 6 4.2278 -7.0991 4.0314 16 6 4.7412 -8.1274 4.7666 17 6 3.9759 -9.2916 4.9722 18 6 4.5015 -10.3625 5.7277 19 1 5.2727 -10.1787 6.4610 20 6 4.0233 -11.6617 5.5262 21 7 3.3676 -11.9553 4.4323 22 14 4.3205 -12.9772 6.8187 23 1 5.0811 -12.3939 7.9530 24 1 3.0171 -13.4927 7.3091 25 1 5.1001 -14.0909 6.2212 26 6 2.6832 -9.3818 4.4205 27 6 2.1824 -8.3422 3.6925 28 6 2.0633 -0.7710 1.1912 29 8 1.8892 -0.5187 2.3642 30 1 -0.3633 0.4680 0.9149 31 1 -0.3633 0.5585 -0.8627 32 1 -0.3633 -1.0263 -0.0523 33 1 1.9043 -0.5415 -2.0941 34 1 4.3532 -3.1497 0.9343 35 1 3.7953 -2.3472 2.4219 36 1 1.6023 -3.0933 3.3276 37 1 4.1968 -5.3076 2.0962 38 1 3.5144 -4.5973 3.5789 39 1 4.8150 -6.2073 3.8694 40 1 5.7334 -8.0505 5.1864 41 1 3.0356 -12.8561 4.2928 42 1 2.0897 -10.2710 4.5738 43 1 1.1911 -8.4095 3.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875409087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:09 Heat of formation + Delta-G solvation = -109.026646 kcal Electronic energy + Delta-G solvation = -27999.017592 eV Core-core repulsion = 23817.428924 eV Total energy + Delta-G solvation = -4181.588668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.76717 -39.08433 -38.89104 -37.66930 -36.60064 -36.12679 -34.95668 -33.31586 -31.22549 -30.76016 -29.68265 -29.01101 -26.93981 -25.07164 -24.61182 -22.99714 -22.32442 -20.94307 -20.71240 -20.52103 -18.47917 -17.59999 -17.37392 -17.10155 -16.85612 -16.45616 -16.12201 -15.85540 -15.49688 -15.22940 -14.76041 -14.58799 -14.38094 -14.17768 -13.95176 -13.82705 -13.41393 -13.01598 -12.87121 -12.48298 -12.37988 -12.30214 -12.14724 -11.80959 -11.52392 -11.27756 -11.18164 -11.14681 -10.90043 -10.66803 -10.53680 -10.42618 -10.01219 -9.96943 -9.81502 -9.70943 -9.33827 -9.01766 -7.63862 -7.03117 -6.71880 -4.24973 1.29893 1.79091 2.64624 2.72699 2.77336 2.95658 3.09510 3.14662 3.20880 3.51642 3.82070 3.96022 4.14546 4.28927 4.36939 4.59056 4.62123 4.78449 4.90861 5.00162 5.07150 5.10791 5.17300 5.29289 5.36264 5.54004 5.57485 5.67284 5.90672 6.05997 6.22905 6.35606 6.67536 6.72557 6.98161 7.03083 7.11422 7.18933 7.45778 7.55175 7.57496 7.76034 7.79200 8.01307 8.20873 8.44843 8.65595 8.90517 8.99052 10.22558 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.001987 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.025341 B =14088.913276 C =14198.685453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 H 0.127 0.873 4 N -0.726 5.726 5 C 0.702 3.298 6 O -0.539 6.539 7 N -0.568 5.568 8 C 0.089 3.911 9 C 0.095 3.905 10 H 0.113 0.887 11 O -0.546 6.546 12 C 0.042 3.958 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.167 4.167 16 C -0.198 4.198 17 C 0.088 3.912 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.134 4.134 27 C -0.118 4.118 28 C 0.529 3.471 29 O -0.461 6.461 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.440 0.560 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.376 0.624 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.280 0.720 42 H 0.126 0.874 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 23.282 -8.928 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 H 0.145 0.855 4 N -0.391 5.391 5 C 0.402 3.598 6 O -0.412 6.412 7 N -0.314 5.314 8 C -0.033 4.033 9 C 0.034 3.966 10 H 0.131 0.869 11 O -0.351 6.351 12 C -0.035 4.035 13 O -0.232 6.232 14 C -0.053 4.053 15 C -0.186 4.186 16 C -0.218 4.218 17 C 0.086 3.914 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.137 4.137 28 C 0.316 3.684 29 O -0.330 6.330 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.284 0.716 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.223 0.777 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.817 22.479 -9.299 24.624 hybrid contribution 0.743 -0.344 0.555 0.989 sum -3.074 22.135 -8.744 23.997 Atomic orbital electron populations 1.21976 0.90465 1.04323 1.04310 1.22087 0.97889 0.97846 0.83892 0.85533 1.45581 1.55124 1.29193 1.09251 1.15885 0.79927 0.82273 0.81699 1.91051 1.48343 1.41012 1.60775 1.46162 1.49152 1.28364 1.07714 1.22334 0.95811 0.88595 0.96557 1.22276 0.86569 0.90917 0.96809 0.86947 1.86625 1.31830 1.80219 1.36413 1.22971 0.94135 0.87278 0.99145 1.85883 1.42348 1.24146 1.70774 1.18611 0.94773 0.89295 1.02619 1.20390 0.94968 0.99448 1.03802 1.20557 0.99156 0.96359 1.05751 1.17605 0.90907 0.91839 0.91092 1.19487 1.19470 0.91253 1.19051 0.90508 1.25891 0.93329 0.99935 0.95115 1.69847 1.28628 1.21486 1.22451 0.86286 0.79006 0.80055 0.81498 1.18484 1.19737 1.20095 1.20983 0.96013 0.97505 1.00800 1.19840 0.98704 0.92322 1.02823 1.20803 0.77091 0.80415 0.90077 1.90800 1.56313 1.69289 1.16616 0.89633 0.90351 0.91000 0.71562 0.87116 0.87935 0.77651 0.91945 0.92531 0.88896 0.88724 0.90963 0.85653 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.63 37.16 0.36 -0.30 16 2 C 0.09 0.48 4.32 -68.20 -0.29 0.18 16 3 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 4 N -0.73 -4.46 6.24 -59.19 -0.37 -4.83 16 5 C 0.70 7.29 8.62 -88.02 -0.76 6.53 16 6 O -0.54 -7.60 17.48 5.34 0.09 -7.50 16 7 N -0.57 -5.64 2.53 -120.73 -0.31 -5.94 16 8 C 0.09 0.89 5.38 -4.05 -0.02 0.87 16 9 C 0.09 1.23 3.52 -26.73 -0.09 1.13 16 10 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 11 O -0.55 -7.53 12.69 -40.06 -0.51 -8.04 16 12 C 0.04 0.64 4.37 37.16 0.16 0.80 16 13 O -0.32 -6.55 10.09 -23.57 -0.24 -6.78 16 14 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 15 C -0.17 -3.78 8.96 -39.83 -0.36 -4.13 16 16 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 17 C 0.09 2.37 5.57 -106.81 -0.60 1.77 16 18 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.86 10.96 55.55 0.61 -20.25 16 22 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 27 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 28 C 0.53 4.77 7.18 -10.55 -0.08 4.69 16 29 O -0.46 -5.16 17.70 5.59 0.10 -5.06 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.44 1.61 8.96 -40.82 -0.37 1.25 16 34 H 0.11 1.04 7.86 -51.93 -0.41 0.64 16 35 H 0.10 0.86 8.00 -51.93 -0.42 0.44 16 36 H 0.38 4.27 9.05 45.56 0.41 4.68 16 37 H 0.06 0.90 7.64 -51.92 -0.40 0.51 16 38 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 39 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 40 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 43 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -33.70 370.00 -8.29 -42.00 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.73 Total: 9.37 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -3.49 Total: -12.32 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: -0.07 Total: -31.02 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.55 Total: -27.39 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.70 -8.29 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875409087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.030 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds