Wall clock time and date at job start Tue Mar 31 2020 18:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.65448 * 2 1 4 4 N 1.47311 * 110.60076 * 237.08830 * 2 1 3 5 5 C 1.34520 * 106.61815 * 241.47626 * 4 2 1 6 6 O 1.21532 * 123.77247 * 180.02562 * 5 4 2 7 7 N 1.33795 * 112.46104 * 359.74332 * 5 4 2 8 8 C 1.46500 * 124.18318 * 180.30664 * 7 5 4 9 9 C 1.52994 * 109.47099 * 270.14792 * 8 7 5 10 10 H 1.09007 * 109.47300 * 60.00139 * 9 8 7 11 11 O 1.42900 * 109.47577 * 300.00069 * 9 8 7 12 12 C 1.52998 * 109.47296 * 179.97438 * 9 8 7 13 13 O 1.42895 * 109.47477 * 185.00570 * 12 9 8 14 14 C 1.35679 * 117.00034 * 180.02562 * 13 12 9 15 15 C 1.39317 * 119.81815 * 359.71895 * 14 13 12 16 16 C 1.36437 * 120.18238 * 179.76390 * 15 14 13 17 17 C 1.40833 * 119.81487 * 0.50972 * 16 15 14 18 18 C 1.41208 * 120.17864 * 179.76431 * 17 16 15 19 19 H 1.07995 * 120.00511 * 24.52702 * 18 17 16 20 20 C 1.39895 * 119.99806 * 204.52570 * 18 17 16 21 21 N 1.30883 * 119.99976 * 17.94144 * 20 18 17 22 22 Si 1.86802 * 119.99803 * 197.94659 * 20 18 17 23 23 H 1.48495 * 109.47258 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46967 * 120.00161 * 22 20 18 25 25 H 1.48500 * 109.46840 * 239.99522 * 22 20 18 26 26 C 1.40833 * 119.64067 * 359.74563 * 17 16 15 27 27 C 1.36443 * 119.81065 * 359.97438 * 26 17 16 28 28 C 1.34770 * 111.64017 * 0.43983 * 7 5 4 29 29 O 1.21239 * 127.16021 * 179.85122 * 28 7 5 30 30 H 1.08999 * 109.46988 * 297.09100 * 1 2 3 31 31 H 1.08998 * 109.46979 * 57.08199 * 1 2 3 32 32 H 1.08995 * 109.47079 * 177.08371 * 1 2 3 33 33 H 0.96998 * 126.68912 * 61.44686 * 4 2 1 34 34 H 1.08997 * 109.47128 * 30.15056 * 8 7 5 35 35 H 1.09001 * 109.46989 * 150.15157 * 8 7 5 36 36 H 0.96700 * 113.99289 * 299.99984 * 11 9 8 37 37 H 1.09008 * 109.47182 * 305.00286 * 12 9 8 38 38 H 1.09005 * 109.46974 * 64.99712 * 12 9 8 39 39 H 1.08001 * 119.90722 * 0.02562 * 15 14 13 40 40 H 1.08007 * 120.09161 * 180.25504 * 16 15 14 41 41 H 0.97003 * 119.99584 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.09709 * 180.02562 * 26 17 16 43 43 H 1.08001 * 119.90493 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 7 2.0484 -0.7492 -1.1576 5 6 2.7599 -1.7780 -0.6627 6 8 3.3291 -2.6000 -1.3536 7 7 2.7760 -1.7917 0.6750 8 6 3.4789 -2.7943 1.4795 9 6 2.5415 -3.9699 1.7622 10 1 2.2249 -4.4170 0.8198 11 8 1.3952 -3.5040 2.4770 12 6 3.2757 -5.0172 2.6018 13 8 2.4412 -6.1653 2.7675 14 6 2.9462 -7.1942 3.4935 15 6 4.2278 -7.0991 4.0314 16 6 4.7412 -8.1274 4.7666 17 6 3.9759 -9.2916 4.9722 18 6 4.5015 -10.3625 5.7277 19 1 5.2727 -10.1787 6.4610 20 6 4.0233 -11.6617 5.5262 21 7 3.3676 -11.9553 4.4323 22 14 4.3205 -12.9772 6.8187 23 1 5.0811 -12.3939 7.9530 24 1 3.0171 -13.4927 7.3091 25 1 5.1001 -14.0909 6.2212 26 6 2.6832 -9.3818 4.4205 27 6 2.1824 -8.3422 3.6925 28 6 2.0633 -0.7710 1.1912 29 8 1.8892 -0.5187 2.3642 30 1 -0.3633 0.4680 0.9149 31 1 -0.3633 0.5585 -0.8627 32 1 -0.3633 -1.0263 -0.0523 33 1 1.9043 -0.5415 -2.0941 34 1 4.3532 -3.1497 0.9343 35 1 3.7953 -2.3472 2.4219 36 1 1.6023 -3.0933 3.3276 37 1 4.1968 -5.3076 2.0962 38 1 3.5144 -4.5973 3.5789 39 1 4.8150 -6.2073 3.8694 40 1 5.7334 -8.0505 5.1864 41 1 3.0356 -12.8561 4.2928 42 1 2.0897 -10.2710 4.5738 43 1 1.1911 -8.4095 3.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875409087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:08 Heat of formation + Delta-G solvation = -134.341447 kcal Electronic energy + Delta-G solvation = -28000.115324 eV Core-core repulsion = 23817.428924 eV Total energy + Delta-G solvation = -4182.686400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.47372 -40.67063 -39.69264 -38.98997 -37.75041 -37.35869 -35.75632 -35.19364 -32.29690 -31.55358 -31.28765 -30.85903 -28.05655 -26.54561 -25.60866 -24.06479 -23.17494 -22.57526 -22.31019 -21.55796 -19.30346 -19.23968 -18.66802 -18.23509 -17.80692 -17.47458 -17.24718 -17.04299 -16.50499 -16.31195 -16.02391 -15.73667 -15.53507 -15.43693 -15.22653 -15.06296 -14.64028 -14.09928 -14.00147 -13.95145 -13.62528 -13.39846 -13.21228 -13.09246 -12.90165 -12.80833 -12.63682 -12.43762 -12.34359 -12.05090 -11.73450 -11.65465 -11.57177 -11.23364 -11.16065 -10.88833 -10.76611 -10.45116 -9.57217 -8.94045 -8.60442 -6.23512 0.59883 0.93452 1.01779 1.08355 1.39604 1.50575 1.55097 1.86987 2.18337 2.22514 2.48625 2.71725 2.94879 3.26957 3.62745 3.69136 3.74044 3.77441 3.86836 3.98847 4.12474 4.26431 4.32334 4.34412 4.41146 4.42724 4.58152 4.75521 4.77530 4.84629 4.89171 5.05933 5.20768 5.21228 5.27591 5.57294 5.63274 5.80677 5.87177 5.98096 6.05127 6.25133 6.36398 6.54789 6.61439 6.79452 6.94360 7.06307 7.08716 8.36376 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.001987 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.025341 B =14088.913276 C =14198.685453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.101 3.899 3 H 0.166 0.834 4 N -0.705 5.705 5 C 0.695 3.305 6 O -0.583 6.583 7 N -0.573 5.573 8 C 0.093 3.907 9 C 0.106 3.894 10 H 0.090 0.910 11 O -0.561 6.561 12 C 0.033 3.967 13 O -0.332 6.332 14 C -0.001 4.001 15 C -0.163 4.163 16 C -0.207 4.207 17 C 0.054 3.946 18 C -0.497 4.497 19 H 0.077 0.923 20 C 0.031 3.969 21 N -0.832 5.832 22 Si 0.983 3.017 23 H -0.257 1.257 24 H -0.266 1.266 25 H -0.267 1.267 26 C -0.153 4.153 27 C -0.135 4.135 28 C 0.522 3.478 29 O -0.486 6.486 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.453 0.547 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.386 0.614 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.287 0.713 42 H 0.109 0.891 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 25.589 -9.041 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 H 0.183 0.817 4 N -0.371 5.371 5 C 0.396 3.604 6 O -0.460 6.460 7 N -0.318 5.318 8 C -0.029 4.029 9 C 0.045 3.955 10 H 0.108 0.892 11 O -0.368 6.368 12 C -0.043 4.043 13 O -0.248 6.248 14 C -0.045 4.045 15 C -0.182 4.182 16 C -0.227 4.227 17 C 0.052 3.948 18 C -0.527 4.527 19 H 0.095 0.905 20 C -0.182 4.182 21 N -0.459 5.459 22 Si 0.804 3.196 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.173 4.173 27 C -0.153 4.153 28 C 0.311 3.689 29 O -0.356 6.356 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.068 0.932 33 H 0.300 0.700 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.491 24.854 -9.436 26.813 hybrid contribution 0.572 -0.864 0.496 1.148 sum -2.919 23.990 -8.940 25.768 Atomic orbital electron populations 1.21990 0.89402 1.03450 1.05829 1.22303 0.98409 0.98611 0.81382 0.81669 1.45546 1.53484 1.27756 1.10301 1.16091 0.80070 0.82619 0.81646 1.91020 1.50462 1.42885 1.61625 1.46244 1.49311 1.28510 1.07738 1.22258 0.95053 0.87843 0.97763 1.22111 0.86704 0.91398 0.95250 0.89171 1.86597 1.32545 1.80384 1.37226 1.23351 0.94275 0.85851 1.00823 1.85868 1.43891 1.24973 1.70037 1.18678 0.94663 0.89444 1.01694 1.20717 0.94885 1.00213 1.02349 1.20824 0.99657 0.96251 1.05954 1.17970 0.91497 0.93187 0.92134 1.19737 1.20659 0.92323 1.19975 0.90461 1.26776 0.92680 1.01870 0.96924 1.69905 1.29410 1.22504 1.24058 0.85144 0.79100 0.76901 0.78447 1.18051 1.19035 1.19198 1.20893 0.96276 0.97733 1.02385 1.20002 0.99436 0.92911 1.02995 1.21451 0.76465 0.80242 0.90764 1.90788 1.57089 1.69867 1.17850 0.89364 0.87436 0.93207 0.69993 0.86543 0.85912 0.76441 0.90769 0.90524 0.84978 0.87397 0.90234 0.87295 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.63 71.98 0.69 -0.19 16 2 C 0.10 0.75 4.32 44.37 0.19 0.94 16 3 H 0.17 0.11 8.14 -2.39 -0.02 0.09 16 4 N -0.71 -7.03 6.24 -459.62 -2.87 -9.90 16 5 C 0.70 13.64 8.62 179.44 1.55 15.19 16 6 O -0.58 -16.31 17.48 -3.82 -0.07 -16.38 16 7 N -0.57 -10.56 2.53 -773.14 -1.96 -12.51 16 8 C 0.09 1.72 5.38 86.38 0.46 2.18 16 9 C 0.11 2.65 3.52 30.59 0.11 2.75 16 10 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 11 O -0.56 -14.98 12.69 -144.36 -1.83 -16.81 16 12 C 0.03 0.96 4.37 71.98 0.31 1.27 16 13 O -0.33 -13.49 10.09 -85.35 -0.86 -14.36 16 14 C 0.00 -0.05 6.71 22.79 0.15 0.11 16 15 C -0.16 -7.15 8.96 22.11 0.20 -6.95 16 16 C -0.21 -10.20 9.74 22.48 0.22 -9.98 16 17 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 18 C -0.50 -27.21 9.04 23.40 0.21 -26.99 16 19 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 20 C 0.03 1.61 5.13 85.24 0.44 2.05 16 21 N -0.83 -44.70 10.96 21.82 0.24 -44.46 16 22 Si 0.98 38.91 29.60 68.60 2.03 40.94 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 25 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.15 -8.43 8.64 22.49 0.19 -8.23 16 27 C -0.13 -6.81 9.92 22.11 0.22 -6.59 16 28 C 0.52 8.39 7.18 87.94 0.63 9.02 16 29 O -0.49 -10.03 17.70 -2.90 -0.05 -10.08 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.45 2.15 8.96 -92.71 -0.83 1.32 16 34 H 0.12 2.04 7.86 -2.39 -0.02 2.02 16 35 H 0.12 1.77 8.00 -2.39 -0.02 1.75 16 36 H 0.39 8.29 9.05 -74.06 -0.67 7.62 16 37 H 0.07 1.98 7.64 -2.38 -0.02 1.97 16 38 H 0.08 1.92 7.66 -2.38 -0.02 1.90 16 39 H 0.13 4.66 6.27 -2.91 -0.02 4.64 16 40 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 41 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 42 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 43 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -75.58 370.00 -0.33 -75.91 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.43 Total: 30.20 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 5.47 Total: -22.55 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -4.59 Total: -66.88 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -2.81 Total: -57.62 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -75.58 -0.33 -75.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875409087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.429 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds