Wall clock time and date at job start Tue Mar 31 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46965 * 2 1 4 4 C 1.52996 * 109.47157 * 119.99487 * 2 1 3 5 5 H 1.08998 * 109.47655 * 300.00872 * 4 2 1 6 6 N 1.46494 * 109.47286 * 180.02562 * 4 2 1 7 7 C 1.34777 * 120.00282 * 85.00438 * 6 4 2 8 8 O 1.21759 * 119.99652 * 359.97438 * 7 6 4 9 9 C 1.46237 * 120.00534 * 179.97438 * 7 6 4 10 10 S 1.75667 * 125.22523 * 0.02562 * 9 7 6 11 11 C 1.75479 * 92.08915 * 179.97438 * 10 9 7 12 12 C 1.32764 * 111.36467 * 0.02562 * 11 10 9 13 13 C 1.39547 * 125.22685 * 179.71793 * 9 7 6 14 14 C 1.40537 * 123.71587 * 0.02562 * 13 9 7 15 15 H 1.08000 * 120.00106 * 334.95321 * 14 13 9 16 16 C 1.40309 * 119.99731 * 154.95526 * 14 13 9 17 17 N 1.30642 * 119.99789 * 162.38816 * 16 14 13 18 18 Si 1.86793 * 120.00235 * 342.39396 * 16 14 13 19 19 H 1.48496 * 109.47445 * 94.00411 * 18 16 14 20 20 H 1.48504 * 109.47205 * 214.00378 * 18 16 14 21 21 H 1.48505 * 109.47331 * 334.00464 * 18 16 14 22 22 C 1.50705 * 109.46770 * 60.00316 * 4 2 1 23 23 N 1.30522 * 126.34281 * 75.02653 * 22 4 2 24 24 N 1.28600 * 109.66993 * 179.97438 * 23 22 4 25 25 C 1.30516 * 109.67550 * 0.02562 * 24 23 22 26 26 N 1.35487 * 126.34870 * 255.29514 * 22 4 2 27 27 C 1.46499 * 126.98045 * 359.97438 * 26 22 4 28 28 H 1.08993 * 109.47212 * 299.99896 * 1 2 3 29 29 H 1.09006 * 109.47044 * 60.00273 * 1 2 3 30 30 H 1.09002 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47550 * 240.00423 * 2 1 3 32 32 H 1.08999 * 109.47729 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.47418 * 300.00080 * 3 2 1 34 34 H 1.09006 * 109.46941 * 59.99716 * 3 2 1 35 35 H 0.97001 * 120.00357 * 265.00004 * 6 4 2 36 36 H 1.07994 * 124.31532 * 179.97438 * 11 10 9 37 37 H 1.07997 * 122.78644 * 179.97438 * 12 11 10 38 38 H 0.96999 * 119.99644 * 179.97438 * 17 16 14 39 39 H 1.07993 * 126.35021 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47409 * 270.17873 * 27 26 22 41 41 H 1.08994 * 109.47199 * 30.18452 * 27 26 22 42 42 H 1.09004 * 109.47197 * 150.18309 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -0.2074 2.1392 6 7 3.5050 -0.7206 1.2496 7 6 4.1784 0.3374 1.7432 8 8 3.5692 1.2930 2.1884 9 6 5.6408 0.3377 1.7440 10 16 6.6547 -0.9624 1.1377 11 6 8.1237 -0.0925 1.5436 12 6 7.8522 1.0850 2.0934 13 6 6.4452 1.3734 2.2211 14 6 5.9396 2.5645 2.7696 15 1 4.9548 2.9110 2.4931 16 6 6.7144 3.3035 3.6763 17 7 6.4187 4.5520 3.9222 18 14 8.1689 2.5023 4.5318 19 1 9.4088 2.7773 3.7623 20 1 8.3039 3.0571 5.9027 21 1 7.9504 1.0356 4.6107 22 6 1.5377 -2.1420 1.2493 23 7 1.9811 -3.1192 0.5062 24 7 1.3248 -4.1938 0.7674 25 6 0.4325 -3.9508 1.6884 26 7 0.5388 -2.6406 2.0169 27 6 -0.2613 -1.9120 3.0045 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4427 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9904 -1.4817 0.8947 36 1 9.1212 -0.4676 1.3692 37 1 8.6214 1.7718 2.4144 38 1 6.9541 5.0628 4.5493 39 1 -0.2642 -4.6614 2.1080 40 1 0.2235 -1.9699 3.9790 41 1 -0.3478 -0.8681 2.7032 42 1 -1.2549 -2.3559 3.0661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875697859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:45 Heat of formation + Delta-G solvation = 44.749370 kcal Electronic energy + Delta-G solvation = -26897.517315 eV Core-core repulsion = 23197.642497 eV Total energy + Delta-G solvation = -3699.874817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.21150 -40.62964 -38.34735 -37.18825 -35.94922 -35.20452 -34.25660 -31.90190 -30.99775 -28.95309 -28.47240 -28.08298 -26.88336 -23.82849 -23.43233 -22.53017 -22.23778 -20.88618 -20.73215 -19.56507 -18.04512 -17.86190 -17.46898 -17.33654 -16.74801 -16.37093 -16.15527 -15.82234 -15.61788 -15.37425 -14.99528 -14.44799 -14.34148 -14.22959 -13.95083 -13.81934 -13.57782 -13.42588 -13.30061 -13.05461 -12.96580 -12.70250 -12.62337 -12.51854 -12.24581 -11.96673 -11.81480 -11.78000 -11.39464 -11.33267 -11.18535 -11.14146 -10.51003 -10.26930 -9.95460 -9.46110 -9.11363 -9.04127 -6.50145 0.12178 0.73635 1.18104 1.18865 1.35567 1.43889 1.47204 1.66076 1.71666 1.81097 2.06146 2.45369 2.54682 3.04392 3.20375 3.64928 3.78958 3.83464 3.88144 4.11488 4.19755 4.23468 4.31462 4.40238 4.51603 4.59991 4.63287 4.73254 4.82361 4.86149 4.89418 4.91544 5.02207 5.05681 5.10487 5.19254 5.27882 5.33866 5.45870 5.63353 5.79934 5.89301 6.23494 6.49996 6.60755 6.87374 7.65553 7.71078 8.00189 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.003877 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.098400 B = 7221.069453 C = 7896.039985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.250 3.750 5 H 0.092 0.908 6 N -0.730 5.730 7 C 0.600 3.400 8 O -0.578 6.578 9 C -0.457 4.457 10 S 0.028 5.972 11 C -0.155 4.155 12 C -0.197 4.197 13 C 0.099 3.901 14 C -0.404 4.404 15 H 0.075 0.925 16 C 0.045 3.955 17 N -0.809 5.809 18 Si 0.966 3.034 19 H -0.237 1.237 20 H -0.270 1.270 21 H -0.252 1.252 22 C 0.168 3.832 23 N -0.320 5.320 24 N -0.343 5.343 25 C 0.170 3.830 26 N -0.465 5.465 27 C 0.057 3.943 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.399 0.601 36 H 0.192 0.808 37 H 0.138 0.862 38 H 0.304 0.696 39 H 0.269 0.731 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 -10.911 0.104 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.185 4.185 4 C 0.142 3.858 5 H 0.110 0.890 6 N -0.383 5.383 7 C 0.396 3.604 8 O -0.462 6.462 9 C -0.576 4.576 10 S 0.286 5.714 11 C -0.290 4.290 12 C -0.230 4.230 13 C 0.088 3.912 14 C -0.434 4.434 15 H 0.093 0.907 16 C -0.176 4.176 17 N -0.433 5.433 18 Si 0.787 3.213 19 H -0.161 1.161 20 H -0.196 1.196 21 H -0.176 1.176 22 C -0.101 4.101 23 N -0.161 5.161 24 N -0.182 5.182 25 C -0.118 4.118 26 N -0.155 5.155 27 C -0.084 4.084 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.234 0.766 36 H 0.209 0.791 37 H 0.156 0.844 38 H 0.115 0.885 39 H 0.285 0.715 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.845 -12.118 -1.119 15.653 hybrid contribution 0.258 1.899 1.707 2.566 sum -9.587 -10.219 0.588 14.024 Atomic orbital electron populations 1.21750 0.92356 1.01526 1.03466 1.21456 0.97563 0.95866 0.96418 1.21722 1.00118 0.95280 1.01366 1.18997 0.80974 0.85587 1.00261 0.89004 1.45674 1.05329 1.21183 1.66064 1.16790 0.85892 0.81314 0.76385 1.90690 1.69581 1.35649 1.50320 1.22963 0.94582 1.02539 1.37499 1.82842 0.97183 1.22555 1.68816 1.25531 1.02599 0.97603 1.03231 1.21466 0.95724 0.99134 1.06658 1.18178 0.90553 0.91238 0.91261 1.19599 1.02918 1.01531 1.19375 0.90678 1.27256 1.00555 0.93991 0.95804 1.69609 1.37933 1.08715 1.27026 0.85583 0.77579 0.80437 0.77667 1.16100 1.19565 1.17593 1.24586 0.92769 0.98142 0.94626 1.74135 1.23212 0.96252 1.22456 1.74161 1.08202 1.19714 1.16129 1.27351 1.01930 0.85030 0.97501 1.46364 1.27493 1.10286 1.31361 1.22599 0.97079 0.98372 0.90364 0.91302 0.90783 0.93051 0.91472 0.95298 0.91788 0.93080 0.76634 0.79119 0.84446 0.88513 0.71523 0.89137 0.88935 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.81 71.98 0.63 -2.31 16 2 C -0.09 -2.80 2.68 -10.79 -0.03 -2.83 16 3 C -0.13 -4.52 7.72 71.98 0.56 -3.97 16 4 C 0.25 8.19 2.15 44.25 0.10 8.29 16 5 H 0.09 3.09 6.68 -2.39 -0.02 3.08 16 6 N -0.73 -29.16 4.95 -450.48 -2.23 -31.39 16 7 C 0.60 28.94 6.12 86.32 0.53 29.47 16 8 O -0.58 -30.94 11.59 -4.54 -0.05 -30.99 16 9 C -0.46 -22.54 6.51 24.67 0.16 -22.38 16 10 S 0.03 1.12 22.25 -56.49 -1.26 -0.14 16 11 C -0.15 -5.75 11.07 66.64 0.74 -5.02 16 12 C -0.20 -8.55 7.55 22.61 0.17 -8.38 16 13 C 0.10 5.11 5.27 -20.89 -0.11 5.00 16 14 C -0.40 -22.92 8.99 23.33 0.21 -22.71 16 15 H 0.08 4.87 6.30 -2.91 -0.02 4.85 16 16 C 0.04 2.29 5.48 85.37 0.47 2.76 16 17 N -0.81 -42.29 13.92 21.89 0.30 -41.98 16 18 Si 0.97 39.00 24.53 68.60 1.68 40.68 16 19 H -0.24 -8.42 6.63 99.48 0.66 -7.76 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 21 H -0.25 -10.57 6.73 99.48 0.67 -9.90 16 22 C 0.17 4.93 5.56 137.98 0.77 5.69 16 23 N -0.32 -10.83 11.92 -50.15 -0.60 -11.42 16 24 N -0.34 -10.21 12.21 -59.99 -0.73 -10.94 16 25 C 0.17 3.26 12.74 180.11 2.30 5.55 16 26 N -0.47 -9.41 3.15 -542.08 -1.71 -11.12 16 27 C 0.06 0.63 10.83 127.77 1.38 2.01 16 28 H 0.07 1.34 7.70 -2.39 -0.02 1.32 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.05 1.09 7.22 -2.39 -0.02 1.07 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.03 1.24 5.77 -2.39 -0.01 1.22 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 1.92 7.52 -2.38 -0.02 1.91 16 35 H 0.40 15.84 7.44 -92.71 -0.69 15.15 16 36 H 0.19 5.23 8.06 -2.91 -0.02 5.21 16 37 H 0.14 5.53 4.55 -2.91 -0.01 5.51 16 38 H 0.30 13.86 8.29 -92.71 -0.77 13.09 16 39 H 0.27 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.11 6.90 -2.39 -0.02 1.09 16 42 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -74.67 351.66 3.58 -71.09 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.30 Total: 35.03 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 7.87 Total: -8.81 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.96 Total: -106.86 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.68 Total: 40.68 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.26 Total: -0.14 kcal Total: -74.67 3.58 -71.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875697859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.836 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds