Wall clock time and date at job start Tue Mar 31 2020 17:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47476 * 2 1 4 4 N 1.29024 * 124.91461 * 89.99676 * 3 2 1 5 5 C 1.31786 * 117.11995 * 180.02562 * 4 3 2 6 6 C 1.50700 * 122.74823 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.46618 * 275.02214 * 6 5 4 8 8 C 1.34774 * 119.99842 * 180.02562 * 7 6 5 9 9 O 1.21613 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.47432 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.41283 * 126.41517 * 359.97438 * 10 8 7 12 12 N 1.30450 * 108.02431 * 179.71949 * 11 10 8 13 13 N 1.39939 * 108.89458 * 0.43924 * 12 11 10 14 14 C 1.46491 * 125.75158 * 179.81322 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69119 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.34263 * 108.48917 * 359.54930 * 13 12 11 24 24 C 1.50703 * 126.28631 * 180.26204 * 23 13 12 25 25 C 1.33632 * 114.50280 * 0.23033 * 5 4 3 26 26 S 1.70972 * 124.91367 * 269.99901 * 3 2 1 27 27 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47061 * 300.00406 * 1 2 3 29 29 H 1.09004 * 109.46779 * 59.99971 * 1 2 3 30 30 H 1.08998 * 109.47582 * 239.99546 * 2 1 3 31 31 H 1.09009 * 109.47181 * 119.99855 * 2 1 3 32 32 H 1.08992 * 109.47328 * 155.02374 * 6 5 4 33 33 H 1.09000 * 109.47351 * 35.01775 * 6 5 4 34 34 H 0.96999 * 120.00352 * 359.97438 * 7 6 5 35 35 H 1.08004 * 125.98627 * 359.97438 * 11 10 8 36 36 H 1.09004 * 109.47166 * 149.69385 * 14 13 12 37 37 H 1.08994 * 109.47507 * 29.69092 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46848 * 90.00184 * 24 23 13 40 40 H 1.09001 * 109.46567 * 209.99823 * 24 23 13 41 41 H 1.08997 * 109.47219 * 329.99861 * 24 23 13 42 42 H 1.08001 * 126.03836 * 179.77350 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7134 3.3482 0.8793 6 6 3.0393 4.2720 2.0245 7 7 1.8168 4.9428 2.4738 8 6 1.8666 5.8217 3.4943 9 8 2.9262 6.0575 4.0425 10 6 0.6365 6.4972 3.9461 11 6 -0.6594 6.3265 3.4098 12 7 -1.4775 7.0901 4.0802 13 7 -0.7531 7.7833 5.0565 14 6 -1.3080 8.7441 6.0129 15 6 -1.2565 10.1290 5.4210 16 1 -0.8514 10.2785 4.4311 17 6 -1.7325 11.2045 6.1407 18 7 -2.2262 11.0224 7.3459 19 14 -1.6757 12.9200 5.4038 20 1 -1.0786 12.8559 4.0457 21 1 -3.0539 13.4656 5.3130 22 1 -0.8500 13.8025 6.2668 23 6 0.5353 7.4149 4.9724 24 6 1.6635 7.9120 5.8391 25 6 2.8365 3.7122 -0.4006 26 16 2.3587 2.3434 -1.4020 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 3.7629 5.0176 1.6952 33 1 3.4609 3.6953 2.8478 34 1 0.9717 4.7550 2.0363 35 1 -0.9267 5.6747 2.5912 36 1 -0.7234 8.7201 6.9327 37 1 -2.3427 8.4813 6.2331 38 1 -2.5607 11.7791 7.8524 39 1 1.7606 7.2684 6.7135 40 1 2.5932 7.8950 5.2703 41 1 1.4526 8.9320 6.1603 42 1 3.1718 4.6746 -0.7581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896257493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:14 Heat of formation + Delta-G solvation = 64.508288 kcal Electronic energy + Delta-G solvation = -25012.093783 eV Core-core repulsion = 21313.075777 eV Total energy + Delta-G solvation = -3699.018006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79316 -40.33658 -38.61850 -35.17135 -33.99831 -33.72951 -32.06209 -31.18111 -30.29146 -27.97735 -26.84752 -26.33480 -25.47429 -23.40715 -22.32663 -21.75174 -20.14050 -19.83636 -19.08862 -18.06675 -17.05119 -16.74627 -15.98216 -15.81000 -15.15009 -15.01761 -14.88076 -14.57564 -14.50016 -14.16618 -13.88722 -13.74591 -13.31997 -13.07574 -12.76476 -12.58997 -12.53953 -12.42555 -12.08067 -12.04271 -11.77735 -11.64748 -11.54386 -11.45404 -11.09550 -10.91370 -10.37072 -10.17655 -9.96540 -9.90723 -9.76094 -9.53086 -9.07647 -8.97149 -8.71472 -8.56418 -7.89629 -6.33482 -4.41259 0.32266 0.98108 1.35317 2.20763 2.28587 2.81331 3.17051 3.24179 3.25843 3.34293 3.58958 3.75462 3.94289 4.24602 4.40670 4.65330 4.77638 4.78987 4.95090 5.00327 5.09783 5.15214 5.27731 5.38511 5.42424 5.49178 5.60213 5.67442 5.74452 5.80160 5.84363 5.97618 6.12331 6.44817 6.58377 6.62997 6.80336 6.91122 7.17647 7.40875 7.57019 7.73715 7.77722 7.80855 8.39343 8.60869 8.65394 9.25721 10.74728 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.002154 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.256606 B =12996.026878 C =13164.900705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.052 3.948 4 N -0.459 5.459 5 C 0.053 3.947 6 C 0.202 3.798 7 N -0.729 5.729 8 C 0.606 3.394 9 O -0.555 6.555 10 C -0.332 4.332 11 C 0.058 3.942 12 N -0.296 5.296 13 N -0.314 5.314 14 C 0.251 3.749 15 C -0.540 4.540 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.166 3.834 24 C -0.098 4.098 25 C -0.239 4.239 26 S 0.120 5.880 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.399 0.601 35 H 0.173 0.827 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.269 0.731 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -19.880 -16.350 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.227 4.227 4 N -0.173 5.173 5 C -0.079 4.079 6 C 0.076 3.924 7 N -0.382 5.382 8 C 0.397 3.603 9 O -0.435 6.435 10 C -0.347 4.347 11 C -0.129 4.129 12 N -0.116 5.116 13 N -0.091 5.091 14 C 0.133 3.867 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C 0.029 3.971 24 C -0.156 4.156 25 C -0.379 4.379 26 S 0.376 5.624 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.233 0.767 35 H 0.190 0.810 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.245 -19.545 -16.118 26.642 hybrid contribution 0.438 1.189 -0.090 1.270 sum 8.683 -18.356 -16.208 25.982 Atomic orbital electron populations 1.21780 0.93251 1.02731 1.02901 1.20247 0.96927 0.87365 1.04314 1.27136 1.02790 1.01929 0.90815 1.66108 1.14066 1.05599 1.31546 1.20285 1.01938 0.91557 0.94106 1.19600 0.87699 0.92391 0.92747 1.45664 1.10625 1.45129 1.36754 1.17285 0.87627 0.77336 0.78070 1.90697 1.31258 1.64626 1.56882 1.19636 0.94209 1.12923 1.07932 1.23695 0.90743 0.98868 0.99599 1.77135 1.20949 1.10353 1.03129 1.49369 1.04289 1.30376 1.25063 1.19856 0.96377 0.85061 0.85370 1.21299 1.43013 0.90357 1.03129 0.91595 1.24934 0.94280 0.99761 0.94742 1.69927 1.39987 1.32095 1.10653 0.86269 0.78032 0.82853 0.79371 1.19526 1.20577 1.20533 1.21474 0.87469 0.92937 0.95203 1.20618 0.94891 1.01840 0.98229 1.26983 1.10777 1.04318 0.95790 1.84020 1.60153 1.05457 1.12806 0.91289 0.91685 0.92344 0.89657 0.88643 0.89881 0.89855 0.76746 0.80953 0.92533 0.92500 0.92164 0.90487 0.88592 0.89902 0.80163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.90 37.16 0.37 -0.45 16 2 C -0.05 -0.28 6.52 -27.88 -0.18 -0.46 16 3 C 0.05 0.44 6.64 -13.46 -0.09 0.35 16 4 N -0.46 -5.01 10.53 -8.06 -0.08 -5.10 16 5 C 0.05 0.55 6.11 -84.23 -0.51 0.04 16 6 C 0.20 2.34 6.11 -5.19 -0.03 2.31 16 7 N -0.73 -9.62 5.54 -62.56 -0.35 -9.97 16 8 C 0.61 10.32 7.81 -12.52 -0.10 10.22 16 9 O -0.56 -10.69 14.84 5.27 0.08 -10.61 16 10 C -0.33 -6.21 6.13 -105.07 -0.64 -6.85 16 11 C 0.06 1.04 11.50 -16.98 -0.20 0.85 16 12 N -0.30 -6.47 12.50 30.86 0.39 -6.09 16 13 N -0.31 -7.20 3.56 -57.78 -0.21 -7.41 16 14 C 0.25 6.29 5.78 -5.20 -0.03 6.26 16 15 C -0.54 -14.60 9.39 -34.44 -0.32 -14.92 16 16 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 19 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.17 3.45 7.01 -81.60 -0.57 2.88 16 24 C -0.10 -1.79 9.34 36.01 0.34 -1.46 16 25 C -0.24 -2.00 11.12 29.12 0.32 -1.68 16 26 S 0.12 0.86 23.18 -107.50 -2.49 -1.64 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.40 4.65 7.42 -40.82 -0.30 4.35 16 35 H 0.17 2.30 7.50 -52.48 -0.39 1.91 16 36 H 0.06 1.41 7.62 -51.93 -0.40 1.01 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.10 1.72 6.50 -51.93 -0.34 1.39 16 41 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 42 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -31.92 377.25 -8.61 -40.53 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.60 Total: 3.89 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.75 Total: -1.22 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.48 Total: -52.49 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.92 -8.61 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896257493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.040 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds