Wall clock time and date at job start Tue Mar 31 2020 17:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47476 * 2 1 4 4 N 1.29024 * 124.91461 * 89.99676 * 3 2 1 5 5 C 1.31786 * 117.11995 * 180.02562 * 4 3 2 6 6 C 1.50700 * 122.74823 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.46618 * 275.02214 * 6 5 4 8 8 C 1.34774 * 119.99842 * 180.02562 * 7 6 5 9 9 O 1.21613 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.47432 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.41283 * 126.41517 * 359.97438 * 10 8 7 12 12 N 1.30450 * 108.02431 * 179.71949 * 11 10 8 13 13 N 1.39939 * 108.89458 * 0.43924 * 12 11 10 14 14 C 1.46491 * 125.75158 * 179.81322 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69119 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.34263 * 108.48917 * 359.54930 * 13 12 11 24 24 C 1.50703 * 126.28631 * 180.26204 * 23 13 12 25 25 C 1.33632 * 114.50280 * 0.23033 * 5 4 3 26 26 S 1.70972 * 124.91367 * 269.99901 * 3 2 1 27 27 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47061 * 300.00406 * 1 2 3 29 29 H 1.09004 * 109.46779 * 59.99971 * 1 2 3 30 30 H 1.08998 * 109.47582 * 239.99546 * 2 1 3 31 31 H 1.09009 * 109.47181 * 119.99855 * 2 1 3 32 32 H 1.08992 * 109.47328 * 155.02374 * 6 5 4 33 33 H 1.09000 * 109.47351 * 35.01775 * 6 5 4 34 34 H 0.96999 * 120.00352 * 359.97438 * 7 6 5 35 35 H 1.08004 * 125.98627 * 359.97438 * 11 10 8 36 36 H 1.09004 * 109.47166 * 149.69385 * 14 13 12 37 37 H 1.08994 * 109.47507 * 29.69092 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46848 * 90.00184 * 24 23 13 40 40 H 1.09001 * 109.46567 * 209.99823 * 24 23 13 41 41 H 1.08997 * 109.47219 * 329.99861 * 24 23 13 42 42 H 1.08001 * 126.03836 * 179.77350 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7134 3.3482 0.8793 6 6 3.0393 4.2720 2.0245 7 7 1.8168 4.9428 2.4738 8 6 1.8666 5.8217 3.4943 9 8 2.9262 6.0575 4.0425 10 6 0.6365 6.4972 3.9461 11 6 -0.6594 6.3265 3.4098 12 7 -1.4775 7.0901 4.0802 13 7 -0.7531 7.7833 5.0565 14 6 -1.3080 8.7441 6.0129 15 6 -1.2565 10.1290 5.4210 16 1 -0.8514 10.2785 4.4311 17 6 -1.7325 11.2045 6.1407 18 7 -2.2262 11.0224 7.3459 19 14 -1.6757 12.9200 5.4038 20 1 -1.0786 12.8559 4.0457 21 1 -3.0539 13.4656 5.3130 22 1 -0.8500 13.8025 6.2668 23 6 0.5353 7.4149 4.9724 24 6 1.6635 7.9120 5.8391 25 6 2.8365 3.7122 -0.4006 26 16 2.3587 2.3434 -1.4020 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 3.7629 5.0176 1.6952 33 1 3.4609 3.6953 2.8478 34 1 0.9717 4.7550 2.0363 35 1 -0.9267 5.6747 2.5912 36 1 -0.7234 8.7201 6.9327 37 1 -2.3427 8.4813 6.2331 38 1 -2.5607 11.7791 7.8524 39 1 1.7606 7.2684 6.7135 40 1 2.5932 7.8950 5.2703 41 1 1.4526 8.9320 6.1603 42 1 3.1718 4.6746 -0.7581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896257493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:13 Heat of formation + Delta-G solvation = 43.584921 kcal Electronic energy + Delta-G solvation = -25013.001088 eV Core-core repulsion = 21313.075777 eV Total energy + Delta-G solvation = -3699.925311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33141 -41.11084 -39.91381 -36.10411 -35.80635 -34.64615 -33.79360 -32.76776 -31.13741 -29.40838 -28.44605 -27.46814 -26.17032 -25.27273 -23.45556 -22.68032 -21.30574 -20.86997 -20.49286 -18.98011 -18.85500 -18.24331 -17.09027 -16.85175 -16.56759 -16.29751 -16.15647 -15.63229 -15.59496 -15.35334 -15.07694 -14.65325 -14.44429 -14.35389 -14.06820 -13.91271 -13.72003 -13.63826 -13.59183 -13.14013 -13.08477 -12.95679 -12.72723 -12.52755 -12.37052 -12.33449 -11.97684 -11.84141 -11.75013 -10.90681 -10.77097 -10.60004 -10.38697 -10.27432 -10.16162 -9.77686 -9.46008 -8.38637 -6.55056 -0.30554 0.39279 0.66856 0.72236 1.30122 1.36078 1.38235 1.46496 1.51143 1.72078 2.31938 2.52502 2.54974 2.93487 3.02602 3.69732 3.74105 3.80753 4.07183 4.12352 4.21884 4.24556 4.31280 4.35340 4.48500 4.62528 4.66527 4.68778 4.76882 4.79715 4.89839 5.01466 5.05143 5.07525 5.14426 5.15343 5.36015 5.41848 5.48875 5.64639 5.73999 6.03902 6.54311 6.55444 6.76895 6.82343 7.16143 7.30675 8.69541 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.002154 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.256606 B =12996.026878 C =13164.900705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.040 3.960 4 N -0.493 5.493 5 C 0.035 3.965 6 C 0.205 3.795 7 N -0.711 5.711 8 C 0.608 3.392 9 O -0.580 6.580 10 C -0.330 4.330 11 C 0.079 3.921 12 N -0.335 5.335 13 N -0.338 5.338 14 C 0.267 3.733 15 C -0.555 4.555 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.917 5.917 19 Si 0.973 3.027 20 H -0.272 1.272 21 H -0.273 1.273 22 H -0.268 1.268 23 C 0.148 3.852 24 C -0.090 4.090 25 C -0.239 4.239 26 S 0.171 5.829 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.408 0.592 35 H 0.220 0.780 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.274 0.726 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -20.716 -18.919 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.238 4.238 4 N -0.208 5.208 5 C -0.097 4.097 6 C 0.079 3.921 7 N -0.362 5.362 8 C 0.398 3.602 9 O -0.461 6.461 10 C -0.346 4.346 11 C -0.108 4.108 12 N -0.155 5.155 13 N -0.115 5.115 14 C 0.148 3.852 15 C -0.593 4.593 16 H 0.070 0.930 17 C -0.178 4.178 18 N -0.555 5.555 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.198 1.198 22 H -0.193 1.193 23 C 0.012 3.988 24 C -0.148 4.148 25 C -0.380 4.380 26 S 0.427 5.573 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.244 0.756 35 H 0.236 0.764 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.843 -20.423 -18.718 29.080 hybrid contribution 0.296 1.281 0.581 1.438 sum 9.139 -19.141 -18.137 27.908 Atomic orbital electron populations 1.21762 0.92995 1.03548 1.02067 1.20390 0.97056 0.86196 1.05327 1.27570 1.02248 1.02868 0.91150 1.66087 1.15427 1.06159 1.33145 1.20051 1.03849 0.91602 0.94185 1.19598 0.86855 0.92605 0.93004 1.45519 1.11881 1.43601 1.35244 1.17070 0.86542 0.77836 0.78773 1.90686 1.31795 1.65658 1.57977 1.19910 0.95333 1.12199 1.07119 1.24407 0.89730 0.97482 0.99212 1.77088 1.22360 1.11945 1.04100 1.49120 1.05133 1.31346 1.25899 1.19381 0.94897 0.85064 0.85836 1.21420 1.43467 0.91718 1.02684 0.93008 1.25747 0.93599 1.03445 0.95043 1.70006 1.40331 1.33458 1.11656 0.85283 0.78339 0.78241 0.78484 1.19696 1.19846 1.19301 1.21978 0.87121 0.93517 0.96206 1.20597 0.94311 1.01357 0.98539 1.27256 1.09540 1.05588 0.95588 1.83852 1.58672 1.03772 1.10996 0.89704 0.93666 0.91941 0.87259 0.89035 0.89060 0.91263 0.75641 0.76355 0.93118 0.95045 0.91640 0.89066 0.88134 0.91049 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.90 71.98 0.71 -0.62 16 2 C -0.05 -0.48 6.52 29.85 0.19 -0.28 16 3 C 0.04 0.60 6.64 88.52 0.59 1.19 16 4 N -0.49 -10.15 10.53 -179.41 -1.89 -12.03 16 5 C 0.04 0.67 6.11 41.52 0.25 0.92 16 6 C 0.21 4.53 6.11 85.63 0.52 5.05 16 7 N -0.71 -17.64 5.54 -470.09 -2.60 -20.25 16 8 C 0.61 20.08 7.81 86.67 0.68 20.75 16 9 O -0.58 -21.98 14.84 -4.07 -0.06 -22.04 16 10 C -0.33 -12.14 6.13 -20.15 -0.12 -12.26 16 11 C 0.08 2.72 11.50 85.65 0.99 3.70 16 12 N -0.34 -14.74 12.50 -56.28 -0.70 -15.45 16 13 N -0.34 -15.89 3.56 -336.71 -1.20 -17.09 16 14 C 0.27 13.94 5.78 85.64 0.50 14.44 16 15 C -0.55 -30.79 9.39 25.60 0.24 -30.55 16 16 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 17 C 0.02 1.25 5.46 84.66 0.46 1.71 16 18 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 19 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 C 0.15 6.19 7.01 42.14 0.30 6.49 16 24 C -0.09 -3.36 9.34 71.24 0.67 -2.69 16 25 C -0.24 -3.43 11.12 66.77 0.74 -2.69 16 26 S 0.17 1.95 23.18 -56.49 -1.31 0.64 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.41 8.59 7.42 -92.71 -0.69 7.90 16 35 H 0.22 5.16 7.50 -2.91 -0.02 5.14 16 36 H 0.05 2.65 7.62 -2.38 -0.02 2.63 16 37 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 39 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.10 3.63 6.50 -2.39 -0.02 3.62 16 41 H 0.07 2.79 7.70 -2.39 -0.02 2.77 16 42 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -69.86 377.25 1.62 -68.23 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.37 Total: 19.19 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.71 Total: 5.15 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -6.11 Total: -116.04 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -69.86 1.62 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896257493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.819 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds