Wall clock time and date at job start Tue Mar 31 2020 17:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47201 * 2 1 4 4 N 1.34629 * 125.89618 * 264.69620 * 3 2 1 5 5 H 0.96999 * 124.81091 * 359.97438 * 4 3 2 6 6 C 1.36432 * 110.37906 * 179.82404 * 4 3 2 7 7 C 1.50705 * 125.45452 * 180.16093 * 6 4 3 8 8 N 1.46899 * 109.46844 * 275.30251 * 7 6 4 9 9 C 1.46903 * 110.99762 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.47115 * 325.00094 * 9 8 7 11 11 C 1.50699 * 109.47178 * 205.00125 * 9 8 7 12 12 H 1.08010 * 119.99813 * 275.04338 * 11 9 8 13 13 C 1.37875 * 120.00056 * 95.04125 * 11 9 8 14 14 N 1.31514 * 120.00106 * 183.39836 * 13 11 9 15 15 Si 1.86797 * 120.00133 * 3.39474 * 13 11 9 16 16 H 1.48496 * 109.46951 * 84.74300 * 15 13 11 17 17 H 1.48502 * 109.47398 * 204.74806 * 15 13 11 18 18 H 1.48506 * 109.46839 * 324.74546 * 15 13 11 19 19 C 1.53000 * 109.47136 * 85.00170 * 9 8 7 20 20 F 1.39898 * 109.47546 * 55.34829 * 19 9 8 21 21 F 1.39902 * 109.47218 * 175.35181 * 19 9 8 22 22 F 1.39908 * 109.47178 * 295.34607 * 19 9 8 23 23 C 1.34426 * 109.08560 * 0.44420 * 6 4 3 24 24 C 1.37845 * 125.89547 * 85.00587 * 3 2 1 25 25 C 1.47107 * 127.02421 * 0.02562 * 24 3 2 26 26 O 1.21547 * 119.99735 * 0.02562 * 25 24 3 27 27 O 1.34783 * 120.00074 * 180.02562 * 25 24 3 28 28 C 1.45201 * 117.00308 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.47016 * 299.99775 * 1 2 3 30 30 H 1.09000 * 109.47510 * 59.99515 * 1 2 3 31 31 H 1.08999 * 109.47413 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47510 * 120.00485 * 2 1 3 33 33 H 1.09001 * 109.46515 * 240.00349 * 2 1 3 34 34 H 1.08991 * 109.47334 * 35.30473 * 7 6 4 35 35 H 1.09001 * 109.46963 * 155.30815 * 7 6 4 36 36 H 1.00906 * 111.00210 * 303.95469 * 8 7 6 37 37 H 0.96994 * 120.00047 * 180.02562 * 14 13 11 38 38 H 1.08009 * 126.81500 * 179.73617 * 23 6 4 39 39 H 1.09003 * 109.46799 * 59.99584 * 28 27 25 40 40 H 1.08999 * 109.47301 * 180.02562 * 28 27 25 41 41 H 1.09009 * 109.46486 * 300.00220 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3904 2.1314 -1.0859 5 1 2.3637 1.8009 -1.9975 6 6 2.7932 3.3833 -0.7229 7 6 3.2618 4.4594 -1.6682 8 7 4.6922 4.2763 -1.9481 9 6 5.1851 5.3101 -2.8681 10 1 4.4035 5.5609 -3.5851 11 6 6.3944 4.7928 -3.6036 12 1 7.3737 4.8709 -3.1547 13 6 6.2507 4.2199 -4.8494 14 7 7.2957 3.7083 -5.4624 15 14 4.5717 4.1702 -5.6665 16 1 4.3296 5.4507 -6.3785 17 1 4.5268 3.0476 -6.6377 18 1 3.5238 3.9727 -4.6329 19 6 5.5678 6.5599 -2.0728 20 9 6.4936 6.2168 -1.0817 21 9 6.1356 7.5050 -2.9341 22 9 4.4242 7.1011 -1.4756 23 6 2.7109 3.5012 0.6137 24 6 2.2100 2.2152 1.1124 25 6 1.9511 1.8484 2.5133 26 8 1.5348 0.7390 2.7841 27 8 2.1755 2.7426 3.4966 28 6 1.8985 2.3118 4.8552 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 2.6984 4.3958 -2.5991 35 1 3.1028 5.4371 -1.2133 36 1 5.2295 4.2667 -1.0940 37 1 7.1947 3.3055 -6.3390 38 1 2.9635 4.3700 1.2036 39 1 2.5194 1.4491 5.0966 40 1 2.1206 3.1247 5.5466 41 1 0.8468 2.0384 4.9423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896697733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:20 Heat of formation + Delta-G solvation = -207.534886 kcal Electronic energy + Delta-G solvation = -29467.322756 eV Core-core repulsion = 24739.605710 eV Total energy + Delta-G solvation = -4727.717046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.27702 -46.84831 -46.66695 -41.35624 -39.79209 -36.41019 -36.05557 -33.79099 -32.62274 -31.24063 -30.26479 -27.97555 -27.38130 -24.94363 -24.48630 -23.85487 -21.93802 -20.98837 -20.30514 -19.59026 -18.34127 -17.62233 -17.50158 -17.02099 -16.64251 -16.34049 -16.20107 -15.91249 -14.90880 -14.69104 -14.42974 -14.18222 -13.89546 -13.75848 -13.52435 -13.47379 -13.25455 -13.17273 -13.10455 -13.06669 -12.90638 -12.79036 -12.66054 -12.59110 -12.23825 -12.11576 -11.83354 -11.52830 -11.38422 -11.06992 -11.00234 -10.74485 -10.67778 -10.33168 -10.12291 -9.68489 -8.88607 -8.84021 -8.15394 -7.80739 -6.37372 -4.45686 1.51783 2.40047 2.74458 3.09624 3.15684 3.19241 3.31730 3.35481 3.68286 4.16209 4.48208 4.62135 4.75832 4.90453 4.95231 4.99827 5.04263 5.10814 5.17867 5.19523 5.20284 5.29587 5.40180 5.44075 5.46416 5.67501 5.72499 5.81627 5.88879 5.94835 6.00440 6.08762 6.18427 6.49810 6.79187 7.00908 7.04064 7.44107 7.57267 7.85901 7.96188 8.12825 8.67029 9.19824 10.73359 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.003672 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.201877 B = 7624.053456 C = 9059.777614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C 0.123 3.877 4 N -0.527 5.527 5 H 0.420 0.580 6 C 0.034 3.966 7 C 0.097 3.903 8 N -0.662 5.662 9 C 0.157 3.843 10 H 0.078 0.922 11 C -0.507 4.507 12 H 0.086 0.914 13 C 0.095 3.905 14 N -0.874 5.874 15 Si 0.878 3.122 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.260 1.260 19 C 0.413 3.587 20 F -0.190 7.190 21 F -0.182 7.182 22 F -0.210 7.210 23 C -0.142 4.142 24 C -0.232 4.232 25 C 0.544 3.456 26 O -0.526 6.526 27 O -0.355 6.355 28 C 0.039 3.961 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.341 0.659 37 H 0.271 0.729 38 H 0.149 0.851 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -2.731 11.369 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C 0.002 3.998 4 N -0.121 5.121 5 H 0.258 0.742 6 C -0.075 4.075 7 C -0.033 4.033 8 N -0.294 5.294 9 C 0.048 3.952 10 H 0.096 0.904 11 C -0.545 4.545 12 H 0.104 0.896 13 C -0.112 4.112 14 N -0.509 5.509 15 Si 0.705 3.295 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.185 1.185 19 C 0.357 3.643 20 F -0.171 7.171 21 F -0.164 7.164 22 F -0.192 7.192 23 C -0.166 4.166 24 C -0.240 4.240 25 C 0.391 3.609 26 O -0.417 6.417 27 O -0.271 6.271 28 C -0.055 4.055 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.980 -3.582 10.690 17.193 hybrid contribution -0.653 0.728 0.023 0.978 sum -13.633 -2.854 10.713 17.572 Atomic orbital electron populations 1.21656 0.93996 1.02016 1.02125 1.20321 0.96651 0.89054 1.04227 1.20499 0.99461 0.94307 0.85529 1.41540 1.50127 1.11414 1.09053 0.74190 1.20226 1.05935 0.86718 0.94651 1.20868 0.92051 0.93612 0.96725 1.61693 1.00296 1.48752 1.18669 1.20905 0.99510 0.83538 0.91266 0.90403 1.20461 0.91705 1.40983 1.01380 0.89623 1.24913 0.96803 0.93067 0.96412 1.69862 1.29984 1.35996 1.15021 0.86850 0.84809 0.78345 0.79536 1.19874 1.20934 1.18479 1.22884 0.74013 0.88685 0.78753 1.93074 1.67709 1.92169 1.64192 1.93113 1.85529 1.67723 1.69991 1.93056 1.51742 1.88644 1.85733 1.21811 1.05120 0.97248 0.92413 1.19198 1.19227 0.97033 0.88573 1.20140 0.73476 0.81917 0.85334 1.90781 1.44347 1.22221 1.84396 1.86594 1.79611 1.44120 1.16777 1.23192 1.01450 1.01430 0.79471 0.91974 0.93065 0.91970 0.88046 0.90899 0.90361 0.92018 0.83814 0.91900 0.83363 0.92096 0.88377 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.15 0.37 -1.01 16 2 C -0.06 -0.71 5.81 -27.89 -0.16 -0.87 16 3 C 0.12 1.63 6.47 -81.51 -0.53 1.10 16 4 N -0.53 -6.96 5.89 -5.20 -0.03 -6.99 16 5 H 0.42 4.83 8.96 -40.82 -0.37 4.47 16 6 C 0.03 0.50 6.63 -81.89 -0.54 -0.04 16 7 C 0.10 1.53 5.93 -4.97 -0.03 1.50 16 8 N -0.66 -12.53 6.22 -109.22 -0.68 -13.21 16 9 C 0.16 3.33 1.74 -68.86 -0.12 3.22 16 10 H 0.08 1.62 5.02 -51.93 -0.26 1.36 16 11 C -0.51 -13.00 8.68 -34.44 -0.30 -13.30 16 12 H 0.09 2.44 7.99 -52.48 -0.42 2.02 16 13 C 0.10 2.49 5.47 -17.82 -0.10 2.40 16 14 N -0.87 -24.59 13.96 55.43 0.77 -23.82 16 15 Si 0.88 19.24 26.95 -169.99 -4.58 14.66 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.26 -5.24 6.26 56.52 0.35 -4.89 16 19 C 0.41 8.36 2.79 37.16 0.10 8.47 16 20 F -0.19 -3.88 16.18 2.25 0.04 -3.84 16 21 F -0.18 -3.91 16.90 2.25 0.04 -3.87 16 22 F -0.21 -3.80 15.22 2.25 0.03 -3.77 16 23 C -0.14 -2.08 10.89 -37.49 -0.41 -2.49 16 24 C -0.23 -3.41 6.33 -103.01 -0.65 -4.06 16 25 C 0.54 7.98 7.95 34.33 0.27 8.26 16 26 O -0.53 -8.14 14.67 -19.30 -0.28 -8.42 16 27 O -0.35 -4.71 10.47 -40.72 -0.43 -5.13 16 28 C 0.04 0.36 10.57 101.05 1.07 1.43 16 29 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 1.22 6.79 -51.93 -0.35 0.87 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.22 7.43 -51.93 -0.39 0.84 16 35 H 0.06 0.94 6.15 -51.93 -0.32 0.62 16 36 H 0.34 6.42 7.72 -39.29 -0.30 6.12 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -29.16 359.37 -5.69 -34.85 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.96 Total: 9.53 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.03 Total: 4.60 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.06 Total: -44.01 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.71 Total: -13.55 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 0.11 Total: -11.48 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.58 Total: 14.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.16 -5.69 -34.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896697733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.682 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds