Wall clock time and date at job start Tue Mar 31 2020 17:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47201 * 2 1 4 4 N 1.34629 * 125.89618 * 264.69620 * 3 2 1 5 5 H 0.96999 * 124.81091 * 359.97438 * 4 3 2 6 6 C 1.36432 * 110.37906 * 179.82404 * 4 3 2 7 7 C 1.50705 * 125.45452 * 180.16093 * 6 4 3 8 8 N 1.46899 * 109.46844 * 275.30251 * 7 6 4 9 9 C 1.46903 * 110.99762 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.47115 * 325.00094 * 9 8 7 11 11 C 1.50699 * 109.47178 * 205.00125 * 9 8 7 12 12 H 1.08010 * 119.99813 * 275.04338 * 11 9 8 13 13 C 1.37875 * 120.00056 * 95.04125 * 11 9 8 14 14 N 1.31514 * 120.00106 * 183.39836 * 13 11 9 15 15 Si 1.86797 * 120.00133 * 3.39474 * 13 11 9 16 16 H 1.48496 * 109.46951 * 84.74300 * 15 13 11 17 17 H 1.48502 * 109.47398 * 204.74806 * 15 13 11 18 18 H 1.48506 * 109.46839 * 324.74546 * 15 13 11 19 19 C 1.53000 * 109.47136 * 85.00170 * 9 8 7 20 20 F 1.39898 * 109.47546 * 55.34829 * 19 9 8 21 21 F 1.39902 * 109.47218 * 175.35181 * 19 9 8 22 22 F 1.39908 * 109.47178 * 295.34607 * 19 9 8 23 23 C 1.34426 * 109.08560 * 0.44420 * 6 4 3 24 24 C 1.37845 * 125.89547 * 85.00587 * 3 2 1 25 25 C 1.47107 * 127.02421 * 0.02562 * 24 3 2 26 26 O 1.21547 * 119.99735 * 0.02562 * 25 24 3 27 27 O 1.34783 * 120.00074 * 180.02562 * 25 24 3 28 28 C 1.45201 * 117.00308 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.47016 * 299.99775 * 1 2 3 30 30 H 1.09000 * 109.47510 * 59.99515 * 1 2 3 31 31 H 1.08999 * 109.47413 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47510 * 120.00485 * 2 1 3 33 33 H 1.09001 * 109.46515 * 240.00349 * 2 1 3 34 34 H 1.08991 * 109.47334 * 35.30473 * 7 6 4 35 35 H 1.09001 * 109.46963 * 155.30815 * 7 6 4 36 36 H 1.00906 * 111.00210 * 303.95469 * 8 7 6 37 37 H 0.96994 * 120.00047 * 180.02562 * 14 13 11 38 38 H 1.08009 * 126.81500 * 179.73617 * 23 6 4 39 39 H 1.09003 * 109.46799 * 59.99584 * 28 27 25 40 40 H 1.08999 * 109.47301 * 180.02562 * 28 27 25 41 41 H 1.09009 * 109.46486 * 300.00220 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3904 2.1314 -1.0859 5 1 2.3637 1.8009 -1.9975 6 6 2.7932 3.3833 -0.7229 7 6 3.2618 4.4594 -1.6682 8 7 4.6922 4.2763 -1.9481 9 6 5.1851 5.3101 -2.8681 10 1 4.4035 5.5609 -3.5851 11 6 6.3944 4.7928 -3.6036 12 1 7.3737 4.8709 -3.1547 13 6 6.2507 4.2199 -4.8494 14 7 7.2957 3.7083 -5.4624 15 14 4.5717 4.1702 -5.6665 16 1 4.3296 5.4507 -6.3785 17 1 4.5268 3.0476 -6.6377 18 1 3.5238 3.9727 -4.6329 19 6 5.5678 6.5599 -2.0728 20 9 6.4936 6.2168 -1.0817 21 9 6.1356 7.5050 -2.9341 22 9 4.4242 7.1011 -1.4756 23 6 2.7109 3.5012 0.6137 24 6 2.2100 2.2152 1.1124 25 6 1.9511 1.8484 2.5133 26 8 1.5348 0.7390 2.7841 27 8 2.1755 2.7426 3.4966 28 6 1.8985 2.3118 4.8552 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 2.6984 4.3958 -2.5991 35 1 3.1028 5.4371 -1.2133 36 1 5.2295 4.2667 -1.0940 37 1 7.1947 3.3055 -6.3390 38 1 2.9635 4.3700 1.2036 39 1 2.5194 1.4491 5.0966 40 1 2.1206 3.1247 5.5466 41 1 0.8468 2.0384 4.9423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896697733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:19 Heat of formation + Delta-G solvation = -226.080116 kcal Electronic energy + Delta-G solvation = -29468.126937 eV Core-core repulsion = 24739.605710 eV Total energy + Delta-G solvation = -4728.521227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.91146 -48.44295 -48.35225 -42.42251 -40.83449 -37.77557 -37.27403 -34.96708 -34.27974 -32.30579 -31.70927 -29.10734 -28.40750 -26.76815 -25.68111 -24.86607 -22.94051 -22.70060 -21.41085 -20.63958 -20.02020 -19.26506 -18.88304 -18.41886 -18.34575 -17.50618 -17.22383 -16.91147 -16.46008 -16.03074 -15.57290 -15.42376 -15.34409 -15.19046 -14.90049 -14.81872 -14.65966 -14.58687 -14.57089 -14.45802 -14.29382 -14.13954 -14.04019 -13.67359 -13.56396 -13.09888 -12.99527 -12.76561 -12.60156 -12.46366 -12.31510 -11.93029 -11.78587 -11.68433 -11.62859 -11.40726 -10.82599 -9.93137 -9.46851 -9.10409 -8.35465 -6.49978 0.45570 1.25083 1.38962 1.40477 1.50347 1.79180 2.02264 2.24863 2.32018 2.33193 2.82212 3.12637 3.35354 3.42919 3.64884 3.73011 3.83737 4.03326 4.16145 4.24927 4.32769 4.36112 4.38034 4.39098 4.50088 4.62554 4.65119 4.72403 4.80557 4.91490 5.04191 5.17218 5.20758 5.30109 5.48163 5.69578 5.90260 5.93703 6.14579 6.38095 6.46961 6.60942 6.90497 7.19903 8.79255 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.003672 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.201877 B = 7624.053456 C = 9059.777614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C 0.133 3.867 4 N -0.522 5.522 5 H 0.430 0.570 6 C 0.024 3.976 7 C 0.103 3.897 8 N -0.668 5.668 9 C 0.165 3.835 10 H 0.091 0.909 11 C -0.514 4.514 12 H 0.039 0.961 13 C 0.039 3.961 14 N -0.928 5.928 15 Si 0.940 3.060 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.228 1.228 19 C 0.417 3.583 20 F -0.193 7.193 21 F -0.191 7.191 22 F -0.192 7.192 23 C -0.144 4.144 24 C -0.258 4.258 25 C 0.540 3.460 26 O -0.541 6.541 27 O -0.365 6.365 28 C 0.032 3.968 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.342 0.658 37 H 0.272 0.728 38 H 0.154 0.846 39 H 0.060 0.940 40 H 0.128 0.872 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 -2.859 11.682 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C 0.011 3.989 4 N -0.117 5.117 5 H 0.269 0.731 6 C -0.086 4.086 7 C -0.026 4.026 8 N -0.300 5.300 9 C 0.055 3.945 10 H 0.108 0.892 11 C -0.552 4.552 12 H 0.058 0.942 13 C -0.162 4.162 14 N -0.565 5.565 15 Si 0.762 3.238 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.151 1.151 19 C 0.360 3.640 20 F -0.175 7.175 21 F -0.172 7.172 22 F -0.174 7.174 23 C -0.167 4.167 24 C -0.266 4.266 25 C 0.389 3.611 26 O -0.434 6.434 27 O -0.281 6.281 28 C -0.062 4.062 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.081 0.919 38 H 0.171 0.829 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.579 -3.691 11.032 19.443 hybrid contribution 0.194 0.773 0.087 0.802 sum -15.385 -2.917 11.119 19.205 Atomic orbital electron populations 1.21616 0.92978 1.03026 1.01627 1.20401 0.97416 0.87644 1.04706 1.20867 0.97956 0.94966 0.85124 1.41533 1.49657 1.10926 1.09562 0.73104 1.20021 1.06980 0.87181 0.94383 1.20842 0.89629 0.94535 0.97593 1.61359 1.02290 1.47727 1.18576 1.20688 0.98017 0.83871 0.91956 0.89174 1.20523 0.91644 1.41111 1.01959 0.94232 1.25806 1.00930 0.92516 0.96985 1.70010 1.32743 1.38038 1.15727 0.85872 0.80434 0.78421 0.79072 1.19146 1.21158 1.15053 1.22663 0.74298 0.88296 0.78704 1.93071 1.67966 1.92209 1.64215 1.93099 1.85782 1.68007 1.70359 1.93087 1.50593 1.88339 1.85363 1.21959 1.04666 0.97516 0.92606 1.19429 1.20461 0.97563 0.89173 1.20220 0.73255 0.81892 0.85739 1.90762 1.45187 1.22746 1.84697 1.86574 1.79415 1.44091 1.18069 1.23502 1.01813 1.02791 0.78056 0.93792 0.92158 0.90262 0.89200 0.88728 0.89388 0.91117 0.83792 0.91865 0.82864 0.92077 0.85415 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.89 71.98 0.71 -1.64 16 2 C -0.06 -1.26 5.81 29.84 0.17 -1.09 16 3 C 0.13 3.26 6.47 42.04 0.27 3.54 16 4 N -0.52 -12.46 5.89 -170.37 -1.00 -13.46 16 5 H 0.43 8.53 8.96 -92.71 -0.83 7.70 16 6 C 0.02 0.64 6.63 40.97 0.27 0.92 16 7 C 0.10 2.94 5.93 85.56 0.51 3.45 16 8 N -0.67 -24.04 6.22 -499.47 -3.11 -27.15 16 9 C 0.17 6.77 1.74 44.17 0.08 6.84 16 10 H 0.09 3.49 5.02 -2.39 -0.01 3.48 16 11 C -0.51 -26.67 8.68 25.60 0.22 -26.45 16 12 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 13 C 0.04 2.08 5.47 84.65 0.46 2.54 16 14 N -0.93 -53.63 13.96 21.45 0.30 -53.33 16 15 Si 0.94 38.39 26.95 68.60 1.85 40.24 16 16 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.29 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.23 -8.00 6.26 99.48 0.62 -7.37 16 19 C 0.42 16.38 2.79 71.98 0.20 16.58 16 20 F -0.19 -7.82 16.18 44.97 0.73 -7.09 16 21 F -0.19 -8.07 16.90 44.97 0.76 -7.31 16 22 F -0.19 -6.49 15.22 44.97 0.68 -5.80 16 23 C -0.14 -3.96 10.89 23.62 0.26 -3.71 16 24 C -0.26 -7.26 6.33 -18.82 -0.12 -7.38 16 25 C 0.54 15.47 7.95 70.15 0.56 16.02 16 26 O -0.54 -16.41 14.67 19.68 0.29 -16.12 16 27 O -0.37 -9.32 10.47 -56.95 -0.60 -9.92 16 28 C 0.03 0.54 10.57 113.37 1.20 1.74 16 29 H 0.04 0.93 8.02 -2.39 -0.02 0.91 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 2.04 6.79 -2.39 -0.02 2.03 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 2.38 7.43 -2.39 -0.02 2.36 16 35 H 0.07 1.93 6.15 -2.39 -0.01 1.91 16 36 H 0.34 12.45 7.72 -89.69 -0.69 11.76 16 37 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -63.87 359.37 4.19 -59.68 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.50 Total: 28.90 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.79 Total: 11.36 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.81 Total: -93.94 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.31 Total: -26.04 kcal Atomic # 9 Polarization: -22.37 SS G_CDS: 2.17 Total: -20.20 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.85 Total: 40.24 kcal Total: -63.87 4.19 -59.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896697733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.402 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds