Wall clock time and date at job start Tue Mar 31 2020 17:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 C 1.33644 * 126.03608 * 89.99805 * 3 2 1 5 5 N 1.31777 * 114.49888 * 179.97438 * 4 3 2 6 6 C 1.29030 * 117.12652 * 0.02562 * 5 4 3 7 7 C 1.50700 * 124.91571 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47231 * 90.02310 * 7 6 5 9 9 C 1.34773 * 119.99880 * 180.02562 * 8 7 6 10 10 O 1.21604 * 120.00325 * 359.97438 * 9 8 7 11 11 C 1.47430 * 119.99652 * 179.97438 * 9 8 7 12 12 C 1.41290 * 126.41781 * 0.02562 * 11 9 8 13 13 N 1.30445 * 108.02653 * 180.02562 * 12 11 9 14 14 N 1.39934 * 108.89649 * 359.77258 * 13 12 11 15 15 C 1.46501 * 125.75590 * 180.23769 * 14 13 12 16 16 C 1.50700 * 109.47388 * 270.15649 * 15 14 13 17 17 H 1.07998 * 119.99856 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00089 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47111 * 89.99956 * 20 18 16 22 22 H 1.48504 * 109.47213 * 209.99930 * 20 18 16 23 23 H 1.48499 * 109.47267 * 330.00038 * 20 18 16 24 24 C 1.34258 * 108.49110 * 0.37524 * 14 13 12 25 25 C 1.50706 * 126.29478 * 179.90192 * 24 14 13 26 26 S 1.70978 * 110.16676 * 0.22501 * 6 5 4 27 27 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47376 * 299.99742 * 1 2 3 29 29 H 1.09001 * 109.47478 * 59.99802 * 1 2 3 30 30 H 1.08997 * 109.46808 * 240.00597 * 2 1 3 31 31 H 1.09001 * 109.47478 * 120.00197 * 2 1 3 32 32 H 1.07997 * 122.74609 * 0.02562 * 4 3 2 33 33 H 1.08999 * 109.47053 * 330.02475 * 7 6 5 34 34 H 1.09003 * 109.47112 * 210.02327 * 7 6 5 35 35 H 0.97004 * 119.99492 * 359.97438 * 8 7 6 36 36 H 1.08003 * 125.98620 * 359.97438 * 12 11 9 37 37 H 1.08995 * 109.47372 * 30.15944 * 15 14 13 38 38 H 1.09002 * 109.46691 * 150.15923 * 15 14 13 39 39 H 0.96997 * 119.99503 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46995 * 269.71140 * 25 24 14 41 41 H 1.08994 * 109.46790 * 29.70826 * 25 24 14 42 42 H 1.08997 * 109.47305 * 149.71267 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2943 2.1621 1.0807 5 7 2.7252 3.3792 0.8171 6 6 2.8408 3.7062 -0.4257 7 6 3.3148 5.0469 -0.9244 8 7 4.7706 5.0208 -1.0866 9 6 5.4195 6.1177 -1.5247 10 8 4.7967 7.1290 -1.7859 11 6 6.8846 6.0916 -1.6874 12 6 7.7382 4.9964 -1.4260 13 7 8.9610 5.3657 -1.6902 14 7 8.9481 6.6935 -2.1317 15 6 10.1215 7.4738 -2.5325 16 6 10.6864 8.1852 -1.3300 17 1 10.2180 8.0681 -0.3640 18 6 11.8006 8.9863 -1.4634 19 7 12.3707 9.1292 -2.6400 20 14 12.5012 9.8674 0.0272 21 1 13.5103 8.9998 0.6861 22 1 13.1441 11.1348 -0.4039 23 1 11.4064 10.1683 0.9843 24 6 7.6795 7.1327 -2.1232 25 6 7.2088 8.5077 -2.5222 26 16 2.3716 2.4004 -1.4248 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.1644 1.7935 2.0875 33 1 3.0432 5.8191 -0.2046 34 1 2.8461 5.2639 -1.8843 35 1 5.2674 4.2142 -0.8779 36 1 7.4319 4.0241 -1.0692 37 1 10.8768 6.8068 -2.9481 38 1 9.8305 8.2069 -3.2848 39 1 13.1543 9.6931 -2.7338 40 1 7.2083 9.1593 -1.6485 41 1 7.8786 8.9155 -3.2792 42 1 6.1991 8.4426 -2.9275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896706177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:43 Heat of formation + Delta-G solvation = 64.549215 kcal Electronic energy + Delta-G solvation = -24791.743486 eV Core-core repulsion = 21092.727254 eV Total energy + Delta-G solvation = -3699.016231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80181 -40.14427 -38.76273 -35.37617 -34.27782 -33.85242 -32.10027 -31.22875 -30.17645 -27.99043 -26.95542 -26.47179 -24.45801 -23.39207 -23.01684 -21.93598 -20.02592 -19.77332 -18.99985 -18.40869 -17.14222 -16.76628 -16.12024 -15.54287 -15.22315 -15.16227 -14.81521 -14.54245 -14.49867 -14.39205 -13.95034 -13.91636 -13.28985 -13.06387 -12.91476 -12.69906 -12.53921 -12.38934 -12.11385 -12.08827 -11.99534 -11.77807 -11.47018 -11.30601 -11.11763 -10.88218 -10.37058 -10.20966 -9.95535 -9.93150 -9.62375 -9.55288 -9.12690 -9.07522 -8.70558 -8.58873 -7.92411 -6.33212 -4.40898 0.25113 0.93726 1.37806 2.17113 2.40398 2.79046 3.18861 3.19868 3.25507 3.31529 3.55483 3.79799 3.90132 4.25034 4.30391 4.50392 4.64783 4.75278 5.00077 5.02061 5.09437 5.15137 5.22821 5.27616 5.35293 5.43767 5.53387 5.61581 5.66263 5.76121 5.81014 5.92842 6.13453 6.36134 6.48106 6.57652 6.79763 6.90954 7.15366 7.38021 7.56516 7.64925 7.77376 7.78965 8.37088 8.54066 8.64749 9.26020 10.74995 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.002051 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.659553 B =13649.807964 C =13849.700534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C -0.217 4.217 4 C 0.033 3.967 5 N -0.452 5.452 6 C 0.023 3.977 7 C 0.204 3.796 8 N -0.730 5.730 9 C 0.609 3.391 10 O -0.553 6.553 11 C -0.332 4.332 12 C 0.059 3.941 13 N -0.295 5.295 14 N -0.313 5.313 15 C 0.251 3.749 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.167 3.833 25 C -0.093 4.093 26 S 0.144 5.856 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.175 0.825 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.400 0.600 36 H 0.174 0.826 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.453 -16.200 2.151 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.339 4.339 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.254 4.254 7 C 0.077 3.923 8 N -0.384 5.384 9 C 0.399 3.601 10 O -0.432 6.432 11 C -0.348 4.348 12 C -0.129 4.129 13 N -0.115 5.115 14 N -0.090 5.090 15 C 0.134 3.866 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.030 3.970 25 C -0.151 4.151 26 S 0.399 5.601 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.192 0.808 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.234 0.766 36 H 0.191 0.809 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.253 -15.381 1.096 26.258 hybrid contribution -0.120 -0.137 1.939 1.948 sum -21.373 -15.518 3.035 26.586 Atomic orbital electron populations 1.21809 0.94031 1.02275 1.02569 1.20027 0.96258 0.88708 1.03719 1.26167 1.09702 1.02654 0.95329 1.21732 1.01374 0.88547 1.00201 1.66288 1.14350 1.17371 1.18634 1.26966 1.05389 1.01466 0.91620 1.19616 0.81735 0.89410 1.01523 1.45676 1.06164 1.16161 1.70436 1.17271 0.85972 0.81820 0.74998 1.90704 1.68629 1.31830 1.52008 1.19591 0.92945 0.96473 1.25790 1.23707 0.90429 0.98591 1.00124 1.77144 1.20646 0.94176 1.19505 1.49375 1.06923 1.08435 1.44272 1.19863 0.79850 0.89906 0.97023 1.21249 1.13158 1.28854 0.94548 0.91650 1.24922 0.95953 0.96066 0.96729 1.69915 1.21501 1.38513 1.22774 0.86319 0.79287 0.78875 0.82031 1.20260 1.20786 1.19585 1.21477 0.84966 0.96090 0.94477 1.20579 1.02368 0.89645 1.02522 1.84114 1.59351 1.05865 1.10756 0.91732 0.92191 0.92422 0.90410 0.89531 0.80770 0.88528 0.89358 0.76569 0.80893 0.92494 0.92493 0.92120 0.89781 0.90834 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.27 16 2 C -0.05 -0.23 6.47 -27.88 -0.18 -0.41 16 3 C -0.22 -1.61 5.85 -35.92 -0.21 -1.82 16 4 C 0.03 0.29 11.25 -19.18 -0.22 0.07 16 5 N -0.45 -5.04 10.54 -11.86 -0.13 -5.16 16 6 C 0.02 0.24 6.76 -13.45 -0.09 0.14 16 7 C 0.20 2.27 6.25 -5.19 -0.03 2.23 16 8 N -0.73 -9.25 5.54 -62.56 -0.35 -9.60 16 9 C 0.61 10.03 7.81 -12.52 -0.10 9.93 16 10 O -0.55 -10.30 14.84 5.27 0.08 -10.22 16 11 C -0.33 -6.08 6.13 -105.06 -0.64 -6.73 16 12 C 0.06 1.03 11.50 -16.98 -0.20 0.83 16 13 N -0.29 -6.37 12.50 30.86 0.39 -5.98 16 14 N -0.31 -7.09 3.56 -57.77 -0.21 -7.30 16 15 C 0.25 6.24 5.97 -5.19 -0.03 6.21 16 16 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 20 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.17 3.41 7.01 -81.60 -0.57 2.84 16 25 C -0.09 -1.68 9.57 36.01 0.34 -1.33 16 26 S 0.14 1.16 23.18 -107.50 -2.49 -1.33 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 4.43 7.42 -40.82 -0.30 4.13 16 36 H 0.17 2.24 7.50 -52.48 -0.39 1.84 16 37 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.06 1.40 7.01 -51.93 -0.36 1.04 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.07 1.29 7.04 -51.93 -0.37 0.92 16 42 H 0.09 1.60 6.50 -51.93 -0.34 1.27 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -31.60 376.54 -8.83 -40.43 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.54 Total: 2.97 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.98 Total: -1.50 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.44 Total: -51.92 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.49 Total: -1.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.60 -8.83 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896706177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.976 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds