Wall clock time and date at job start Tue Mar 31 2020 17:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 C 1.33644 * 126.03608 * 89.99805 * 3 2 1 5 5 N 1.31777 * 114.49888 * 179.97438 * 4 3 2 6 6 C 1.29030 * 117.12652 * 0.02562 * 5 4 3 7 7 C 1.50700 * 124.91571 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47231 * 90.02310 * 7 6 5 9 9 C 1.34773 * 119.99880 * 180.02562 * 8 7 6 10 10 O 1.21604 * 120.00325 * 359.97438 * 9 8 7 11 11 C 1.47430 * 119.99652 * 179.97438 * 9 8 7 12 12 C 1.41290 * 126.41781 * 0.02562 * 11 9 8 13 13 N 1.30445 * 108.02653 * 180.02562 * 12 11 9 14 14 N 1.39934 * 108.89649 * 359.77258 * 13 12 11 15 15 C 1.46501 * 125.75590 * 180.23769 * 14 13 12 16 16 C 1.50700 * 109.47388 * 270.15649 * 15 14 13 17 17 H 1.07998 * 119.99856 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00089 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47111 * 89.99956 * 20 18 16 22 22 H 1.48504 * 109.47213 * 209.99930 * 20 18 16 23 23 H 1.48499 * 109.47267 * 330.00038 * 20 18 16 24 24 C 1.34258 * 108.49110 * 0.37524 * 14 13 12 25 25 C 1.50706 * 126.29478 * 179.90192 * 24 14 13 26 26 S 1.70978 * 110.16676 * 0.22501 * 6 5 4 27 27 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47376 * 299.99742 * 1 2 3 29 29 H 1.09001 * 109.47478 * 59.99802 * 1 2 3 30 30 H 1.08997 * 109.46808 * 240.00597 * 2 1 3 31 31 H 1.09001 * 109.47478 * 120.00197 * 2 1 3 32 32 H 1.07997 * 122.74609 * 0.02562 * 4 3 2 33 33 H 1.08999 * 109.47053 * 330.02475 * 7 6 5 34 34 H 1.09003 * 109.47112 * 210.02327 * 7 6 5 35 35 H 0.97004 * 119.99492 * 359.97438 * 8 7 6 36 36 H 1.08003 * 125.98620 * 359.97438 * 12 11 9 37 37 H 1.08995 * 109.47372 * 30.15944 * 15 14 13 38 38 H 1.09002 * 109.46691 * 150.15923 * 15 14 13 39 39 H 0.96997 * 119.99503 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46995 * 269.71140 * 25 24 14 41 41 H 1.08994 * 109.46790 * 29.70826 * 25 24 14 42 42 H 1.08997 * 109.47305 * 149.71267 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2943 2.1621 1.0807 5 7 2.7252 3.3792 0.8171 6 6 2.8408 3.7062 -0.4257 7 6 3.3148 5.0469 -0.9244 8 7 4.7706 5.0208 -1.0866 9 6 5.4195 6.1177 -1.5247 10 8 4.7967 7.1290 -1.7859 11 6 6.8846 6.0916 -1.6874 12 6 7.7382 4.9964 -1.4260 13 7 8.9610 5.3657 -1.6902 14 7 8.9481 6.6935 -2.1317 15 6 10.1215 7.4738 -2.5325 16 6 10.6864 8.1852 -1.3300 17 1 10.2180 8.0681 -0.3640 18 6 11.8006 8.9863 -1.4634 19 7 12.3707 9.1292 -2.6400 20 14 12.5012 9.8674 0.0272 21 1 13.5103 8.9998 0.6861 22 1 13.1441 11.1348 -0.4039 23 1 11.4064 10.1683 0.9843 24 6 7.6795 7.1327 -2.1232 25 6 7.2088 8.5077 -2.5222 26 16 2.3716 2.4004 -1.4248 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.1644 1.7935 2.0875 33 1 3.0432 5.8191 -0.2046 34 1 2.8461 5.2639 -1.8843 35 1 5.2674 4.2142 -0.8779 36 1 7.4319 4.0241 -1.0692 37 1 10.8768 6.8068 -2.9481 38 1 9.8305 8.2069 -3.2848 39 1 13.1543 9.6931 -2.7338 40 1 7.2083 9.1593 -1.6485 41 1 7.8786 8.9155 -3.2792 42 1 6.1991 8.4426 -2.9275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896706177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:42 Heat of formation + Delta-G solvation = 44.247909 kcal Electronic energy + Delta-G solvation = -24792.623817 eV Core-core repulsion = 21092.727254 eV Total energy + Delta-G solvation = -3699.896562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32741 -40.88987 -40.02244 -36.27146 -35.80753 -34.96600 -33.82835 -32.77935 -31.10717 -29.27017 -28.43822 -27.68102 -25.52003 -24.93237 -23.62156 -23.24974 -21.33090 -20.88018 -20.18215 -19.17282 -18.86293 -18.40346 -17.17581 -16.86873 -16.50558 -16.29752 -16.05915 -15.75020 -15.53713 -15.30377 -14.99032 -14.83582 -14.61081 -14.30792 -14.09884 -13.90030 -13.70622 -13.66925 -13.56573 -13.24949 -13.08449 -12.97024 -12.70630 -12.61555 -12.41957 -12.31393 -11.85870 -11.74929 -11.73061 -10.93817 -10.76264 -10.65179 -10.27997 -10.26217 -10.18439 -9.83308 -9.46376 -8.38092 -6.54158 -0.42178 0.29653 0.66729 0.72717 1.30704 1.36998 1.38429 1.48336 1.59452 1.76291 2.31939 2.41900 2.51566 2.94164 3.04520 3.71182 3.74224 3.84078 3.93784 4.11269 4.13981 4.23758 4.39633 4.40719 4.48173 4.57183 4.60467 4.65859 4.78621 4.80503 4.90070 5.05943 5.06962 5.13361 5.17074 5.19594 5.34107 5.36837 5.49261 5.65080 5.74807 6.04152 6.49891 6.54657 6.71728 6.83015 7.16774 7.26999 8.69773 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.002051 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.659553 B =13649.807964 C =13849.700534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.204 4.204 4 C 0.013 3.987 5 N -0.478 5.478 6 C 0.001 3.999 7 C 0.207 3.793 8 N -0.713 5.713 9 C 0.612 3.388 10 O -0.576 6.576 11 C -0.330 4.330 12 C 0.079 3.921 13 N -0.335 5.335 14 N -0.337 5.337 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.051 0.949 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.148 3.852 25 C -0.087 4.087 26 S 0.173 5.827 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.191 0.809 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.410 0.590 36 H 0.221 0.779 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.274 0.726 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.947 -17.915 3.043 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.326 4.326 4 C -0.137 4.137 5 N -0.193 5.193 6 C -0.276 4.276 7 C 0.080 3.920 8 N -0.366 5.366 9 C 0.401 3.599 10 O -0.457 6.457 11 C -0.346 4.346 12 C -0.108 4.108 13 N -0.155 5.155 14 N -0.114 5.114 15 C 0.148 3.852 16 C -0.594 4.594 17 H 0.069 0.931 18 C -0.177 4.177 19 N -0.553 5.553 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.195 1.195 24 C 0.012 3.988 25 C -0.145 4.145 26 S 0.428 5.572 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.208 0.792 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.238 0.762 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.771 -17.126 1.990 28.561 hybrid contribution 0.181 0.228 1.666 1.691 sum -22.590 -16.898 3.656 28.447 Atomic orbital electron populations 1.21804 0.93506 1.03131 1.02110 1.20184 0.96576 0.87133 1.04927 1.26562 1.07848 1.03502 0.94673 1.22013 1.02137 0.88140 1.01430 1.66262 1.14920 1.18707 1.19408 1.26689 1.07036 1.01758 0.92080 1.19615 0.80388 0.90153 1.01823 1.45504 1.07091 1.15300 1.68686 1.17023 0.85177 0.82406 0.75259 1.90694 1.68808 1.32961 1.53244 1.19868 0.94042 0.96019 1.24642 1.24431 0.88877 0.99926 0.97541 1.77096 1.22919 0.94009 1.21463 1.49111 1.06879 1.09084 1.46320 1.19389 0.80323 0.89308 0.96202 1.21387 1.13770 1.29646 0.94562 0.93095 1.25713 0.96048 0.96541 0.99428 1.69993 1.21909 1.39009 1.24433 0.85360 0.78469 0.78080 0.78637 1.19848 1.19540 1.19528 1.21977 0.84569 0.97465 0.94772 1.20571 1.02749 0.88740 1.02396 1.83999 1.58385 1.04623 1.10205 0.90269 0.92532 0.93022 0.89501 0.88018 0.79195 0.89691 0.88352 0.75430 0.76237 0.94970 0.92949 0.91653 0.89918 0.90942 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 71.98 0.71 -0.18 16 2 C -0.05 -0.33 6.47 29.85 0.19 -0.14 16 3 C -0.20 -2.54 5.85 24.64 0.14 -2.40 16 4 C 0.01 0.21 11.25 83.66 0.94 1.15 16 5 N -0.48 -10.01 10.54 -191.45 -2.02 -12.03 16 6 C 0.00 0.01 6.76 88.52 0.60 0.61 16 7 C 0.21 4.34 6.25 85.63 0.54 4.87 16 8 N -0.71 -16.85 5.54 -470.11 -2.60 -19.45 16 9 C 0.61 19.44 7.81 86.67 0.68 20.11 16 10 O -0.58 -21.05 14.84 -4.04 -0.06 -21.11 16 11 C -0.33 -11.81 6.13 -20.15 -0.12 -11.94 16 12 C 0.08 2.67 11.50 85.65 0.99 3.65 16 13 N -0.34 -14.51 12.50 -56.27 -0.70 -15.22 16 14 N -0.34 -15.61 3.56 -336.69 -1.20 -16.81 16 15 C 0.27 13.78 5.97 85.63 0.51 14.30 16 16 C -0.56 -30.77 9.39 25.60 0.24 -30.53 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.02 1.31 5.46 84.65 0.46 1.77 16 19 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 20 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.15 6.09 7.01 42.14 0.30 6.39 16 25 C -0.09 -3.17 9.57 71.24 0.68 -2.49 16 26 S 0.17 2.40 23.18 -56.49 -1.31 1.09 16 27 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.41 8.08 7.42 -92.71 -0.69 7.39 16 36 H 0.22 4.96 7.50 -2.91 -0.02 4.94 16 37 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.70 7.01 -2.39 -0.02 2.68 16 39 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.07 2.61 7.04 -2.39 -0.02 2.60 16 42 H 0.10 3.56 6.50 -2.39 -0.02 3.55 16 Total: -1.00 -68.75 376.54 1.64 -67.11 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.37 Total: 17.21 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 6.85 Total: 5.19 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -6.24 Total: -114.48 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.31 Total: 1.09 kcal Total: -68.75 1.64 -67.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896706177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.353 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds