Wall clock time and date at job start Tue Mar 31 2020 18:52:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.74994 * 2 1
4 4 C 1.53815 * 109.70061 * 120.66219 * 2 1 3
5 5 N 1.46958 * 108.58173 * 169.28858 * 4 2 1
6 6 C 1.34775 * 120.59251 * 124.67179 * 5 4 2
7 7 O 1.21584 * 120.00096 * 185.55992 * 6 5 4
8 8 N 1.34774 * 119.99953 * 5.55586 * 6 5 4
9 9 C 1.38810 * 119.99704 * 185.51752 * 8 6 5
10 10 S 1.70436 * 124.65255 * 0.02794 * 9 8 6
11 11 C 1.75468 * 92.52706 * 179.97438 * 10 9 8
12 12 C 1.32588 * 110.78741 * 359.97438 * 11 10 9
13 13 C 1.37001 * 124.64367 * 179.72203 * 9 8 6
14 14 C 1.43198 * 123.58483 * 0.02562 * 13 9 8
15 15 N 6.23385 * 93.86676 * 77.71717 * 2 1 3
16 16 C 1.46968 * 118.81388 * 304.65013 * 5 4 2
17 17 C 1.53367 * 108.63194 * 55.22668 * 16 5 4
18 18 H 1.09001 * 109.74786 * 190.74768 * 17 16 5
19 19 C 1.53003 * 109.61477 * 70.32111 * 17 16 5
20 20 N 1.46962 * 108.63791 * 310.57369 * 17 16 5
21 21 C 1.36938 * 120.59824 * 235.20706 * 20 17 16
22 22 H 1.07998 * 120.00093 * 144.38398 * 21 20 17
23 23 C 1.38810 * 119.99806 * 324.11758 * 21 20 17
24 24 N 1.31618 * 120.00196 * 4.16920 * 23 21 20
25 25 Si 1.86803 * 119.99959 * 184.17303 * 23 21 20
26 26 H 1.48501 * 109.47210 * 89.99792 * 25 23 21
27 27 H 1.48501 * 109.46952 * 209.99725 * 25 23 21
28 28 H 1.48494 * 109.47167 * 329.99550 * 25 23 21
29 29 H 1.09000 * 109.46855 * 175.57245 * 1 2 3
30 30 H 1.09001 * 109.47067 * 295.56613 * 1 2 3
31 31 H 1.08997 * 109.47585 * 55.57202 * 1 2 3
32 32 H 1.09000 * 109.73668 * 49.50145 * 4 2 1
33 33 H 1.08994 * 109.67213 * 289.04412 * 4 2 1
34 34 H 0.96998 * 120.00484 * 5.51726 * 8 6 5
35 35 H 1.08007 * 124.60470 * 179.97438 * 11 10 9
36 36 H 1.07996 * 123.42771 * 179.97438 * 12 11 10
37 37 H 1.08990 * 109.61090 * 295.47864 * 16 5 4
38 38 H 1.09002 * 109.74830 * 175.05308 * 16 5 4
39 39 H 1.09003 * 109.46628 * 300.85558 * 19 17 16
40 40 H 1.08999 * 109.46936 * 60.84786 * 19 17 16
41 41 H 1.08996 * 109.47391 * 180.85440 * 19 17 16
42 42 H 0.97005 * 120.00321 * 185.00584 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8983 1.0259 0.0000
4 6 2.0485 -0.7385 1.2457
5 7 3.4950 -0.9507 1.0960
6 6 4.3534 -0.5151 2.0393
7 8 5.5523 -0.6054 1.8585
8 7 3.8828 0.0206 3.1829
9 6 4.7622 0.5732 4.1038
10 16 6.4542 0.6383 3.9096
11 6 6.6782 1.4440 5.4522
12 6 5.5134 1.6383 6.0551
13 6 4.3885 1.1464 5.2907
14 6 3.0290 1.2450 5.7293
15 7 1.9504 1.3232 6.0773
16 6 3.9887 -1.6469 -0.1005
17 6 3.4698 -0.9133 -1.3434
18 1 3.6613 -1.5141 -2.2324
19 6 4.1761 0.4376 -1.4746
20 7 2.0233 -0.7011 -1.1938
21 6 1.1511 -1.1437 -2.1522
22 1 0.1809 -1.5222 -1.8660
23 6 1.5117 -1.1005 -3.4919
24 7 2.7212 -0.7116 -3.8357
25 14 0.2803 -1.5943 -4.8070
26 1 -0.4938 -0.4009 -5.2334
27 1 1.0032 -2.1586 -5.9750
28 1 -0.6472 -2.6158 -4.2582
29 1 -0.3633 -1.0246 -0.0793
30 1 -0.3633 0.4435 0.9271
31 1 -0.3634 0.5810 -0.8476
32 1 1.5453 -1.7009 1.3391
33 1 1.8569 -0.1377 2.1347
34 1 2.9296 0.0201 3.3626
35 1 7.6349 1.7412 5.8557
36 1 5.4145 2.1177 7.0177
37 1 3.6237 -2.6739 -0.1029
38 1 5.0787 -1.6461 -0.1036
39 1 3.9881 1.0341 -0.5818
40 1 5.2485 0.2776 -1.5854
41 1 3.7948 0.9635 -2.3499
42 1 2.9506 -0.6117 -4.7729
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000931833321.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:52:50
Heat of formation + Delta-G solvation = 75.559715 kcal
Electronic energy + Delta-G solvation = -26984.218049 eV
Core-core repulsion = 23285.679269 eV
Total energy + Delta-G solvation = -3698.538780 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 334.120 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.78647 -38.51985 -37.62201 -35.96026 -34.85434 -34.25300 -32.75641 -31.40427
-29.09222 -28.01691 -26.52260 -25.86787 -24.55511 -23.79099 -21.60264 -21.19355
-20.67106 -19.26981 -18.89820 -17.97396 -16.64923 -16.27621 -15.84858 -15.55433
-15.24695 -14.78553 -14.40832 -14.26837 -14.22326 -13.99771 -13.58610 -13.35412
-13.25618 -13.15955 -12.77269 -12.49473 -12.12694 -12.04790 -11.84472 -11.67515
-11.44140 -11.14770 -11.05131 -11.00998 -10.89708 -10.71446 -10.68647 -10.22488
-10.15535 -9.95016 -9.88746 -9.62268 -8.65755 -8.52254 -8.41629 -8.10396
-6.65158 -5.92577 -3.46422 0.69676 1.17623 1.87633 1.88917 2.47331
2.63243 3.00908 3.29706 3.37011 3.38129 3.44166 3.74034 4.05270
4.35725 4.80679 4.97293 5.04591 5.26779 5.40523 5.44391 5.52197
5.64229 5.78180 5.79344 6.01663 6.03744 6.10304 6.13236 6.16184
6.18999 6.32638 6.42852 6.65067 6.71295 6.80333 6.84707 6.93210
6.96547 7.46300 7.53145 7.65354 7.69026 7.76119 8.30436 8.39566
9.10307 9.66725 10.25762 11.13567
Molecular weight = 334.12amu
Principal moments of inertia in cm(-1)
A = 0.021383 B = 0.003326 C = 0.002983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.162316 B = 8416.634395 C = 9384.136445
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.157 3.843
3 H 0.033 0.967
4 C 0.092 3.908
5 N -0.593 5.593
6 C 0.694 3.306
7 O -0.561 6.561
8 N -0.649 5.649
9 C 0.099 3.901
10 S 0.328 5.672
11 C -0.297 4.297
12 C -0.068 4.068
13 C -0.150 4.150
14 C 0.280 3.720
15 N -0.435 5.435
16 C 0.105 3.895
17 C 0.173 3.827
18 H 0.126 0.874
19 C -0.134 4.134
20 N -0.581 5.581
21 C -0.256 4.256
22 H 0.069 0.931
23 C 0.015 3.985
24 N -0.898 5.898
25 Si 0.899 3.101
26 H -0.287 1.287
27 H -0.290 1.290
28 H -0.279 1.279
29 H 0.059 0.941
30 H 0.039 0.961
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.058 0.942
34 H 0.414 0.586
35 H 0.169 0.831
36 H 0.146 0.854
37 H 0.062 0.938
38 H 0.085 0.915
39 H 0.018 0.982
40 H 0.031 0.969
41 H 0.069 0.931
42 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.611 2.170 14.606 16.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.049 3.951
3 H 0.051 0.949
4 C -0.033 4.033
5 N -0.326 5.326
6 C 0.395 3.605
7 O -0.440 6.440
8 N -0.296 5.296
9 C -0.125 4.125
10 S 0.588 5.412
11 C -0.433 4.433
12 C -0.099 4.099
13 C -0.172 4.172
14 C -0.035 4.035
15 N -0.113 5.113
16 C -0.018 4.018
17 C 0.066 3.934
18 H 0.143 0.857
19 C -0.193 4.193
20 N -0.304 5.304
21 C -0.385 4.385
22 H 0.087 0.913
23 C -0.184 4.184
24 N -0.542 5.542
25 Si 0.728 3.272
26 H -0.214 1.214
27 H -0.217 1.217
28 H -0.205 1.205
29 H 0.078 0.922
30 H 0.058 0.942
31 H 0.084 0.916
32 H 0.092 0.908
33 H 0.076 0.924
34 H 0.254 0.746
35 H 0.186 0.814
36 H 0.163 0.837
37 H 0.081 0.919
38 H 0.104 0.896
39 H 0.037 0.963
40 H 0.050 0.950
41 H 0.088 0.912
42 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 6.793 1.622 13.559 15.251
hybrid contribution -1.937 0.429 0.485 2.042
sum 4.856 2.052 14.044 15.000
Atomic orbital electron populations
1.21758 0.94968 1.02260 1.00351 1.20836 0.93374 0.93895 0.87017
0.94908 1.22579 0.79919 1.01170 0.99628 1.47291 1.06308 1.58555
1.20468 1.15933 0.85784 0.79022 0.79742 1.90806 1.13008 1.62044
1.78140 1.42338 1.10167 1.59441 1.17654 1.22005 0.99651 0.98753
0.92083 1.84559 0.91025 1.52459 1.13145 1.25971 1.02275 1.11344
1.03661 1.20533 0.89065 1.00269 0.99984 1.15948 0.87624 1.16834
0.96763 1.24974 0.91890 0.93047 0.93633 1.81274 1.11287 1.10505
1.08196 1.22670 0.99784 0.95301 0.84064 1.21040 0.82640 0.95257
0.94470 0.85701 1.21939 0.97900 0.99239 1.00214 1.44103 1.01965
1.64320 1.20041 1.19119 0.98200 1.35681 0.85483 0.91318 1.25307
0.96523 0.98976 0.97581 1.69809 1.17517 1.50413 1.16423 0.86358
0.80980 0.78116 0.81748 1.21363 1.21660 1.20462 0.92170 0.94163
0.91561 0.90845 0.92416 0.74632 0.81376 0.83658 0.91939 0.89618
0.96303 0.94988 0.91234 0.93292
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.25 8.08 37.16 0.30 -1.95 16
2 C 0.16 2.89 3.25 -67.25 -0.22 2.67 16
3 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16
4 C 0.09 1.42 5.85 -3.37 -0.02 1.40 16
5 N -0.59 -9.84 2.59 -177.95 -0.46 -10.30 16
6 C 0.69 11.10 8.25 -86.92 -0.72 10.38 16
7 O -0.56 -9.83 13.21 5.29 0.07 -9.76 16
8 N -0.65 -8.75 5.23 -16.00 -0.08 -8.84 16
9 C 0.10 1.24 6.97 -14.84 -0.10 1.13 16
10 S 0.33 3.65 19.98 -107.50 -2.15 1.50 16
11 C -0.30 -2.48 11.10 28.83 0.32 -2.16 16
12 C -0.07 -0.62 10.35 -38.97 -0.40 -1.02 16
13 C -0.15 -1.71 5.88 -105.90 -0.62 -2.34 16
14 C 0.28 3.58 14.98 -22.47 -0.34 3.24 16
15 N -0.44 -6.32 18.54 41.84 0.78 -5.55 16
16 C 0.10 1.92 5.97 -3.60 -0.02 1.90 16
17 C 0.17 3.69 2.34 -67.49 -0.16 3.53 16
18 H 0.13 3.05 5.85 -51.93 -0.30 2.75 16
19 C -0.13 -2.85 8.90 37.16 0.33 -2.52 16
20 N -0.58 -12.76 2.69 -156.76 -0.42 -13.18 16
21 C -0.26 -6.19 8.50 -15.06 -0.13 -6.32 16
22 H 0.07 1.64 6.28 -52.49 -0.33 1.31 16
23 C 0.02 0.38 5.32 -17.43 -0.09 0.29 16
24 N -0.90 -23.33 9.60 55.49 0.53 -22.80 16
25 Si 0.90 20.13 29.56 -169.99 -5.02 15.10 16
26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16
27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
29 H 0.06 1.02 7.05 -51.93 -0.37 0.65 16
30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16
32 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16
33 H 0.06 0.75 5.71 -51.93 -0.30 0.45 16
34 H 0.41 5.12 5.73 -40.82 -0.23 4.88 16
35 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16
36 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16
37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.09 1.56 6.97 -51.93 -0.36 1.20 16
39 H 0.02 0.38 7.00 -51.93 -0.36 0.02 16
40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.07 1.67 7.28 -51.93 -0.38 1.29 16
42 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16
LS Contribution 352.62 15.07 5.31 5.31
Total: -1.00 -27.31 352.62 -8.42 -35.72
By element:
Atomic # 1 Polarization: 9.63 SS G_CDS: -5.10 Total: 4.53 kcal
Atomic # 6 Polarization: 10.11 SS G_CDS: -1.87 Total: 8.24 kcal
Atomic # 7 Polarization: -61.00 SS G_CDS: 0.34 Total: -60.66 kcal
Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal
Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal
Atomic # 16 Polarization: 3.65 SS G_CDS: -2.15 Total: 1.50 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -27.31 -8.42 -35.72 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931833321.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.285 kcal
(2) G-P(sol) polarization free energy of solvation -27.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.560 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds