Wall clock time and date at job start Tue Mar 31 2020 17:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47073 * 355.22493 * 3 2 1 5 5 N 1.46499 * 109.54681 * 305.27719 * 4 3 2 6 6 C 1.34770 * 119.99831 * 298.48942 * 5 4 3 7 7 O 1.21587 * 119.99982 * 4.78750 * 6 5 4 8 8 N 1.34777 * 120.00113 * 184.78859 * 6 5 4 9 9 C 1.46503 * 119.99921 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47278 * 35.00711 * 9 8 6 11 11 C 1.50708 * 109.46644 * 155.00110 * 9 8 6 12 12 H 1.07991 * 120.00379 * 0.02562 * 11 9 8 13 13 C 1.37877 * 119.99468 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00433 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99513 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47429 * 59.99739 * 15 13 11 17 17 H 1.48507 * 109.46982 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47124 * 299.99050 * 15 13 11 19 19 C 1.52988 * 109.47320 * 274.99811 * 9 8 6 20 20 F 1.39904 * 109.47055 * 60.00512 * 19 9 8 21 21 F 1.39907 * 109.47230 * 179.97438 * 19 9 8 22 22 F 1.39899 * 109.47671 * 300.00312 * 19 9 8 23 23 C 1.53179 * 109.54220 * 65.45509 * 4 3 2 24 24 C 1.53285 * 109.06595 * 176.85205 * 23 4 3 25 25 O 1.42907 * 109.45588 * 302.44353 * 24 23 4 26 26 C 1.42899 * 114.09718 * 61.16107 * 25 24 23 27 27 C 1.53094 * 109.41562 * 298.83546 * 26 25 24 28 28 H 4.44644 * 5.63240 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47048 * 235.22910 * 3 2 1 30 30 H 1.08996 * 109.47386 * 115.22972 * 3 2 1 31 31 H 0.97002 * 119.99885 * 118.21794 * 5 4 3 32 32 H 0.97003 * 120.00034 * 0.02562 * 8 6 5 33 33 H 0.97003 * 120.00108 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.52452 * 296.83812 * 23 4 3 35 35 H 1.09005 * 109.52398 * 57.02547 * 23 4 3 36 36 H 1.08997 * 109.45965 * 182.44830 * 24 23 4 37 37 H 1.08999 * 109.46860 * 62.44190 * 24 23 4 38 38 H 1.09003 * 109.47877 * 178.85551 * 26 25 24 39 39 H 1.08994 * 109.49516 * 58.82634 * 26 25 24 40 40 H 1.08997 * 109.52245 * 297.71094 * 27 26 25 41 41 H 1.08993 * 109.57459 * 177.54878 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4366 0.1201 5 7 2.5686 -2.0684 1.3038 6 6 2.8110 -1.5614 2.5288 7 8 3.4450 -0.5305 2.6455 8 7 2.3506 -2.1971 3.6244 9 6 2.6147 -1.6462 4.9560 10 1 2.5998 -0.5574 4.9083 11 6 1.5540 -2.1214 5.9155 12 1 0.7629 -2.7692 5.5682 13 6 1.5940 -1.7291 7.2366 14 7 2.5577 -0.9406 7.6596 15 14 0.2798 -2.3187 8.4260 16 1 0.3008 -3.8020 8.4915 17 1 0.5473 -1.7602 9.7759 18 1 -1.0533 -1.8627 7.9566 19 6 3.9876 -2.1169 5.4396 20 9 4.9722 -1.6758 4.5489 21 9 4.2400 -1.5904 6.7110 22 9 4.0067 -3.5144 5.5009 23 6 2.7624 -2.2266 -1.1316 24 6 3.3462 -3.6407 -1.0357 25 8 4.7653 -3.5607 -0.8873 26 6 5.1909 -2.8727 0.2906 27 6 4.6830 -1.4290 0.2482 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0091 0.5869 0.8442 30 1 3.0092 0.4388 -0.9296 31 1 2.0015 -2.8492 1.2056 32 1 1.8451 -3.0197 3.5313 33 1 2.5860 -0.6648 8.5892 34 1 1.6760 -2.2827 -1.1998 35 1 3.1586 -1.7286 -2.0166 36 1 3.1063 -4.1949 -1.9430 37 1 2.9188 -4.1524 -0.1734 38 1 6.2798 -2.8736 0.3387 39 1 4.7878 -3.3740 1.1704 40 1 5.1179 -0.9150 -0.6089 41 1 4.9690 -0.9142 1.1653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932889961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:43 Heat of formation + Delta-G solvation = -157.110047 kcal Electronic energy + Delta-G solvation = -31306.372522 eV Core-core repulsion = 26580.842061 eV Total energy + Delta-G solvation = -4725.530461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.32762 -45.98134 -45.59592 -40.64546 -38.52929 -36.11987 -34.48081 -33.10917 -32.58071 -31.29485 -31.18117 -28.33195 -27.93181 -24.56702 -23.78726 -23.44623 -21.99103 -20.45261 -19.41219 -18.43371 -17.88395 -16.94538 -16.78269 -16.59013 -16.42080 -16.03125 -15.85484 -15.25841 -15.02373 -14.80152 -14.56009 -14.31725 -13.82326 -13.38511 -13.00344 -12.98029 -12.89932 -12.81293 -12.56664 -12.39485 -12.34269 -12.26127 -12.14879 -11.96035 -11.80264 -11.40763 -11.16385 -10.88711 -10.86665 -10.77860 -10.58336 -10.40134 -10.15817 -9.99636 -9.68982 -9.63153 -9.25479 -8.76790 -8.70698 -8.17626 -6.24048 -4.47868 2.94035 3.02417 3.13954 3.19063 3.24289 3.26832 3.74527 3.84397 4.18256 4.37920 4.53411 4.58235 4.73766 4.79596 4.88214 4.93328 5.01088 5.10427 5.39307 5.50648 5.57778 5.63127 5.70489 5.76375 5.85393 5.89388 5.90237 6.01836 6.08855 6.21968 6.24112 6.27685 6.82742 6.83565 7.15055 7.22093 7.36340 7.61674 7.68087 7.79767 8.48673 8.64836 9.14277 9.24931 10.67453 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.004311 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.775089 B = 6493.301804 C = 7283.751988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.161 4.161 3 C -0.029 4.029 4 C 0.209 3.791 5 N -0.744 5.744 6 C 0.704 3.296 7 O -0.581 6.581 8 N -0.726 5.726 9 C 0.264 3.736 10 H 0.085 0.915 11 C -0.552 4.552 12 H 0.075 0.925 13 C 0.066 3.934 14 N -0.840 5.840 15 Si 0.914 3.086 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.416 3.584 20 F -0.217 7.217 21 F -0.138 7.138 22 F -0.211 7.211 23 C -0.157 4.157 24 C 0.062 3.938 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.168 4.168 28 H 0.212 0.788 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.391 0.609 32 H 0.393 0.607 33 H 0.269 0.731 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -3.137 -15.180 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.161 4.161 3 C -0.067 4.067 4 C 0.121 3.879 5 N -0.401 5.401 6 C 0.404 3.596 7 O -0.458 6.458 8 N -0.379 5.379 9 C 0.158 3.842 10 H 0.102 0.898 11 C -0.590 4.590 12 H 0.093 0.907 13 C -0.143 4.143 14 N -0.473 5.473 15 Si 0.741 3.259 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.360 3.640 20 F -0.199 7.199 21 F -0.119 7.119 22 F -0.193 7.193 23 C -0.195 4.195 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.012 4.012 27 C -0.206 4.206 28 H 0.229 0.771 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.225 0.775 32 H 0.226 0.774 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.183 -2.146 -14.976 15.130 hybrid contribution -1.342 -0.995 0.937 1.915 sum -1.159 -3.141 -14.038 14.432 Atomic orbital electron populations 1.24734 0.95796 1.01404 1.02507 1.22896 0.94215 0.99773 0.99248 1.19328 0.85292 0.97685 1.04356 1.19939 0.92618 0.91273 0.84020 1.45229 1.55642 1.34572 1.04666 1.16001 0.79842 0.83518 0.80193 1.90832 1.45369 1.24136 1.85487 1.45297 1.58652 1.28595 1.05315 1.19558 0.88489 0.97669 0.78463 0.89785 1.20835 1.10810 1.33818 0.93488 0.90657 1.25065 0.96091 0.94868 0.98307 1.70389 1.28606 1.31048 1.17224 0.86286 0.81080 0.79145 0.79401 1.19861 1.20856 1.19834 1.23183 0.89741 0.74209 0.76886 1.93064 1.67432 1.89481 1.69902 1.93403 1.94700 1.85362 1.38440 1.92984 1.97167 1.32598 1.96520 1.22540 1.02085 0.97191 0.97669 1.22562 0.81873 0.95443 1.01651 1.87906 1.21294 1.76943 1.44169 1.22540 0.99834 0.91390 0.87397 1.22636 0.94293 0.98467 1.05209 0.77117 0.86668 0.89483 0.77529 0.77406 0.92073 0.90133 0.89461 0.88896 0.93186 0.88874 0.92792 0.90485 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.91 19.25 29.55 0.57 -2.34 16 2 C -0.16 -2.23 11.84 -37.12 -0.44 -2.67 16 3 C -0.03 -0.38 4.50 -29.52 -0.13 -0.52 16 4 C 0.21 2.58 0.34 -131.64 -0.05 2.53 16 5 N -0.74 -10.39 3.61 -52.25 -0.19 -10.58 16 6 C 0.70 13.17 7.50 -86.92 -0.65 12.52 16 7 O -0.58 -12.65 11.21 5.29 0.06 -12.59 16 8 N -0.73 -14.43 4.99 -59.82 -0.30 -14.73 16 9 C 0.26 6.46 2.21 -69.08 -0.15 6.30 16 10 H 0.08 2.32 7.58 -51.93 -0.39 1.93 16 11 C -0.55 -13.94 8.46 -34.44 -0.29 -14.24 16 12 H 0.08 1.80 7.74 -52.49 -0.41 1.39 16 13 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 14 N -0.84 -22.89 9.50 55.43 0.53 -22.36 16 15 Si 0.91 19.99 29.54 -169.99 -5.02 14.97 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 C 0.42 10.51 2.81 37.15 0.10 10.62 16 20 F -0.22 -5.37 15.68 2.25 0.04 -5.34 16 21 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16 22 F -0.21 -5.15 16.94 2.25 0.04 -5.11 16 23 C -0.16 -1.51 4.73 -26.49 -0.13 -1.63 16 24 C 0.06 0.60 6.67 37.30 0.25 0.85 16 25 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 26 C 0.06 0.83 6.68 37.21 0.25 1.08 16 27 C -0.17 -2.17 4.74 -26.59 -0.13 -2.30 16 28 H 0.21 2.03 7.80 -54.10 -0.42 1.61 16 29 H 0.12 1.86 6.29 -51.93 -0.33 1.54 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.39 4.62 7.61 -40.82 -0.31 4.30 16 32 H 0.39 6.81 8.56 -40.82 -0.35 6.46 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 0.73 7.51 -51.93 -0.39 0.34 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.48 7.14 -51.93 -0.37 0.11 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.77 7.75 -51.93 -0.40 0.37 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.70 6.17 -51.93 -0.32 1.38 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -30.21 344.57 -5.83 -36.04 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.94 Total: 11.58 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -0.89 Total: 11.80 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.04 Total: -47.66 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.32 Total: -17.71 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 0.10 Total: -14.21 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.21 -5.83 -36.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.071 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds