Wall clock time and date at job start Tue Mar 31 2020 17:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47073 * 355.22493 * 3 2 1 5 5 N 1.46499 * 109.54681 * 305.27719 * 4 3 2 6 6 C 1.34770 * 119.99831 * 298.48942 * 5 4 3 7 7 O 1.21587 * 119.99982 * 4.78750 * 6 5 4 8 8 N 1.34777 * 120.00113 * 184.78859 * 6 5 4 9 9 C 1.46503 * 119.99921 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47278 * 35.00711 * 9 8 6 11 11 C 1.50708 * 109.46644 * 155.00110 * 9 8 6 12 12 H 1.07991 * 120.00379 * 0.02562 * 11 9 8 13 13 C 1.37877 * 119.99468 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00433 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99513 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47429 * 59.99739 * 15 13 11 17 17 H 1.48507 * 109.46982 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47124 * 299.99050 * 15 13 11 19 19 C 1.52988 * 109.47320 * 274.99811 * 9 8 6 20 20 F 1.39904 * 109.47055 * 60.00512 * 19 9 8 21 21 F 1.39907 * 109.47230 * 179.97438 * 19 9 8 22 22 F 1.39899 * 109.47671 * 300.00312 * 19 9 8 23 23 C 1.53179 * 109.54220 * 65.45509 * 4 3 2 24 24 C 1.53285 * 109.06595 * 176.85205 * 23 4 3 25 25 O 1.42907 * 109.45588 * 302.44353 * 24 23 4 26 26 C 1.42899 * 114.09718 * 61.16107 * 25 24 23 27 27 C 1.53094 * 109.41562 * 298.83546 * 26 25 24 28 28 H 4.44644 * 5.63240 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47048 * 235.22910 * 3 2 1 30 30 H 1.08996 * 109.47386 * 115.22972 * 3 2 1 31 31 H 0.97002 * 119.99885 * 118.21794 * 5 4 3 32 32 H 0.97003 * 120.00034 * 0.02562 * 8 6 5 33 33 H 0.97003 * 120.00108 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.52452 * 296.83812 * 23 4 3 35 35 H 1.09005 * 109.52398 * 57.02547 * 23 4 3 36 36 H 1.08997 * 109.45965 * 182.44830 * 24 23 4 37 37 H 1.08999 * 109.46860 * 62.44190 * 24 23 4 38 38 H 1.09003 * 109.47877 * 178.85551 * 26 25 24 39 39 H 1.08994 * 109.49516 * 58.82634 * 26 25 24 40 40 H 1.08997 * 109.52245 * 297.71094 * 27 26 25 41 41 H 1.08993 * 109.57459 * 177.54878 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4366 0.1201 5 7 2.5686 -2.0684 1.3038 6 6 2.8110 -1.5614 2.5288 7 8 3.4450 -0.5305 2.6455 8 7 2.3506 -2.1971 3.6244 9 6 2.6147 -1.6462 4.9560 10 1 2.5998 -0.5574 4.9083 11 6 1.5540 -2.1214 5.9155 12 1 0.7629 -2.7692 5.5682 13 6 1.5940 -1.7291 7.2366 14 7 2.5577 -0.9406 7.6596 15 14 0.2798 -2.3187 8.4260 16 1 0.3008 -3.8020 8.4915 17 1 0.5473 -1.7602 9.7759 18 1 -1.0533 -1.8627 7.9566 19 6 3.9876 -2.1169 5.4396 20 9 4.9722 -1.6758 4.5489 21 9 4.2400 -1.5904 6.7110 22 9 4.0067 -3.5144 5.5009 23 6 2.7624 -2.2266 -1.1316 24 6 3.3462 -3.6407 -1.0357 25 8 4.7653 -3.5607 -0.8873 26 6 5.1909 -2.8727 0.2906 27 6 4.6830 -1.4290 0.2482 28 1 -1.0498 -0.0004 -0.0002 29 1 3.0091 0.5869 0.8442 30 1 3.0092 0.4388 -0.9296 31 1 2.0015 -2.8492 1.2056 32 1 1.8451 -3.0197 3.5313 33 1 2.5860 -0.6648 8.5892 34 1 1.6760 -2.2827 -1.1998 35 1 3.1586 -1.7286 -2.0166 36 1 3.1063 -4.1949 -1.9430 37 1 2.9188 -4.1524 -0.1734 38 1 6.2798 -2.8736 0.3387 39 1 4.7878 -3.3740 1.1704 40 1 5.1179 -0.9150 -0.6089 41 1 4.9690 -0.9142 1.1653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932889961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:42 Heat of formation + Delta-G solvation = -177.018761 kcal Electronic energy + Delta-G solvation = -31307.235829 eV Core-core repulsion = 26580.842061 eV Total energy + Delta-G solvation = -4726.393767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.37835 -48.00994 -47.69598 -41.82799 -39.81404 -37.29772 -36.18506 -34.60502 -34.00658 -32.58348 -32.07876 -29.82511 -29.21650 -26.56892 -24.71427 -24.52630 -23.62075 -22.05512 -20.63842 -19.92517 -18.97759 -18.80840 -18.71844 -18.52435 -17.88423 -17.14932 -16.94775 -16.82364 -16.42174 -16.20038 -15.83847 -15.48265 -15.19787 -14.96175 -14.90573 -14.54833 -14.42349 -14.26831 -14.16612 -14.00117 -13.92761 -13.83096 -13.80015 -13.42449 -13.15447 -12.97832 -12.74076 -12.60683 -12.31004 -12.19626 -11.81384 -11.59651 -11.54125 -11.27846 -11.05980 -10.73061 -10.66910 -10.55272 -10.13275 -9.73997 -8.20443 -6.51067 1.45973 1.48545 1.56434 1.73134 1.94580 2.02045 2.20762 2.37189 2.60048 2.95190 2.95623 3.28274 3.43005 3.69492 3.82568 3.83967 3.91386 3.94393 4.04654 4.22468 4.28111 4.42606 4.57921 4.69506 4.73594 4.79467 4.84211 4.90796 5.01424 5.05726 5.09903 5.16916 5.25959 5.46991 5.56753 5.66417 5.68046 6.14720 6.24431 6.53747 6.79069 7.17857 7.23003 7.72714 8.71902 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.004311 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.775089 B = 6493.301804 C = 7283.751988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.195 4.195 3 C -0.027 4.027 4 C 0.205 3.795 5 N -0.724 5.724 6 C 0.702 3.298 7 O -0.613 6.613 8 N -0.724 5.724 9 C 0.275 3.725 10 H 0.045 0.955 11 C -0.562 4.562 12 H 0.090 0.910 13 C 0.016 3.984 14 N -0.874 5.874 15 Si 0.981 3.019 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.263 1.263 19 C 0.414 3.586 20 F -0.217 7.217 21 F -0.153 7.153 22 F -0.205 7.205 23 C -0.144 4.144 24 C 0.055 3.945 25 O -0.391 6.391 26 C 0.070 3.930 27 C -0.164 4.164 28 H 0.239 0.761 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.404 0.596 32 H 0.406 0.594 33 H 0.268 0.732 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.097 0.903 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -4.589 -16.919 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.195 4.195 3 C -0.064 4.064 4 C 0.119 3.881 5 N -0.381 5.381 6 C 0.402 3.598 7 O -0.493 6.493 8 N -0.378 5.378 9 C 0.167 3.833 10 H 0.062 0.938 11 C -0.599 4.599 12 H 0.108 0.892 13 C -0.189 4.189 14 N -0.508 5.508 15 Si 0.805 3.195 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.188 1.188 19 C 0.357 3.643 20 F -0.199 7.199 21 F -0.134 7.134 22 F -0.187 7.187 23 C -0.182 4.182 24 C -0.021 4.021 25 O -0.310 6.310 26 C -0.006 4.006 27 C -0.203 4.203 28 H 0.256 0.744 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.240 0.760 32 H 0.242 0.758 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.115 0.885 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.598 -3.637 -16.779 17.243 hybrid contribution -0.777 -0.515 1.392 1.676 sum -2.375 -4.152 -15.387 16.113 Atomic orbital electron populations 1.25487 0.96627 1.00088 1.01199 1.23185 0.94785 1.01044 1.00485 1.19250 0.85436 0.97679 1.04069 1.20156 0.92057 0.91500 0.84377 1.45084 1.55024 1.34507 1.03514 1.16144 0.79440 0.83103 0.81096 1.90828 1.46699 1.25673 1.86132 1.45051 1.59270 1.29198 1.04245 1.19076 0.88059 0.95556 0.80574 0.93770 1.21185 1.11128 1.33784 0.93779 0.89248 1.25971 0.98032 0.94816 1.00129 1.70528 1.30495 1.32326 1.17468 0.85244 0.78583 0.78800 0.76888 1.19091 1.21002 1.18778 1.23327 0.90194 0.74386 0.76368 1.93060 1.67516 1.89528 1.69774 1.93372 1.94840 1.85647 1.39521 1.92980 1.97173 1.32061 1.96481 1.22490 1.02882 0.96639 0.96204 1.22811 0.80491 0.95769 1.03055 1.87905 1.22986 1.76725 1.43418 1.22414 1.00149 0.90978 0.87103 1.22560 0.95023 0.98462 1.04212 0.74447 0.90329 0.86984 0.75961 0.75840 0.92210 0.88909 0.87854 0.86207 0.93081 0.88391 0.94752 0.88505 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.08 19.25 74.32 1.43 -3.65 16 2 C -0.19 -5.14 11.84 31.12 0.37 -4.77 16 3 C -0.03 -0.69 4.50 28.79 0.13 -0.56 16 4 C 0.21 4.84 0.34 3.72 0.00 4.84 16 5 N -0.72 -19.70 3.61 -437.48 -1.58 -21.29 16 6 C 0.70 26.66 7.50 179.06 1.34 28.00 16 7 O -0.61 -27.91 11.21 -3.99 -0.04 -27.95 16 8 N -0.72 -28.96 4.99 -461.42 -2.30 -31.26 16 9 C 0.28 13.75 2.21 44.24 0.10 13.85 16 10 H 0.04 2.57 7.58 -2.39 -0.02 2.55 16 11 C -0.56 -28.32 8.46 25.60 0.22 -28.10 16 12 H 0.09 4.15 7.74 -2.92 -0.02 4.13 16 13 C 0.02 0.82 5.20 84.66 0.44 1.26 16 14 N -0.87 -48.56 9.50 21.45 0.20 -48.36 16 15 Si 0.98 40.48 29.54 68.60 2.03 42.50 16 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 C 0.41 21.38 2.81 71.98 0.20 21.58 16 20 F -0.22 -11.09 15.68 44.97 0.70 -10.39 16 21 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 22 F -0.21 -10.05 16.94 44.97 0.76 -9.29 16 23 C -0.14 -2.34 4.73 30.75 0.15 -2.19 16 24 C 0.06 0.91 6.67 72.08 0.48 1.39 16 25 O -0.39 -8.80 10.77 -148.98 -1.60 -10.41 16 26 C 0.07 1.76 6.68 72.01 0.48 2.24 16 27 C -0.16 -4.20 4.74 30.69 0.15 -4.06 16 28 H 0.24 3.84 7.80 -4.43 -0.03 3.81 16 29 H 0.08 2.65 6.29 -2.39 -0.02 2.63 16 30 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.40 8.85 7.61 -92.71 -0.71 8.14 16 32 H 0.41 13.77 8.56 -92.71 -0.79 12.98 16 33 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.09 1.34 7.51 -2.39 -0.02 1.32 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 0.84 7.14 -2.39 -0.02 0.82 16 38 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.03 0.98 7.75 -2.39 -0.02 0.96 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.32 6.17 -2.39 -0.01 2.31 16 Total: -1.00 -66.68 344.57 3.82 -62.86 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.40 Total: 31.79 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 5.48 Total: 29.83 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.68 Total: -100.90 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.65 Total: -38.36 kcal Atomic # 9 Polarization: -29.78 SS G_CDS: 2.05 Total: -27.73 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -66.68 3.82 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.160 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds