Wall clock time and date at job start Tue Mar 31 2020 17:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46497 * 160.52771 * 3 2 1 5 5 N 1.46496 * 109.47005 * 280.52806 * 3 2 1 6 6 C 1.34773 * 119.99973 * 274.99886 * 5 3 2 7 7 O 1.21588 * 120.00151 * 359.73121 * 6 5 3 8 8 N 1.34784 * 119.99935 * 180.02562 * 6 5 3 9 9 C 1.46499 * 119.99893 * 179.72905 * 8 6 5 10 10 H 1.09002 * 109.47048 * 324.99733 * 9 8 6 11 11 C 1.50700 * 109.46791 * 205.00137 * 9 8 6 12 12 H 1.08003 * 120.00276 * 359.97438 * 11 9 8 13 13 C 1.37882 * 120.00054 * 180.02562 * 11 9 8 14 14 N 1.31512 * 119.99850 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99951 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46961 * 89.99990 * 15 13 11 17 17 H 1.48497 * 109.47146 * 209.99690 * 15 13 11 18 18 H 1.48495 * 109.47296 * 330.00194 * 15 13 11 19 19 C 1.52995 * 109.47258 * 85.00288 * 9 8 6 20 20 F 1.39897 * 109.47484 * 59.99404 * 19 9 8 21 21 F 1.39899 * 109.47168 * 179.97438 * 19 9 8 22 22 F 1.39905 * 109.46770 * 299.99363 * 19 9 8 23 23 C 1.52998 * 109.47229 * 40.53102 * 3 2 1 24 24 C 1.53168 * 109.54391 * 179.81992 * 23 3 2 25 25 C 1.53100 * 109.15883 * 183.23892 * 24 23 3 26 26 O 1.42904 * 109.48834 * 57.47536 * 25 24 23 27 27 C 1.42908 * 114.09807 * 298.89396 * 26 25 24 28 28 C 1.53085 * 109.41633 * 61.15174 * 27 26 25 29 29 H 4.18741 * 15.03796 * 0.02562 * 4 2 1 30 30 H 0.97004 * 120.00009 * 95.00735 * 5 3 2 31 31 H 0.97005 * 119.99846 * 359.72693 * 8 6 5 32 32 H 0.96997 * 119.99952 * 180.02562 * 14 13 11 33 33 H 1.09006 * 109.54102 * 299.99998 * 23 3 2 34 34 H 1.09004 * 109.52479 * 303.05831 * 24 23 3 35 35 H 1.09004 * 109.52221 * 63.24979 * 24 23 3 36 36 H 1.09006 * 109.41041 * 297.49368 * 25 24 23 37 37 H 1.08999 * 109.48634 * 177.50330 * 25 24 23 38 38 H 1.09007 * 109.47373 * 301.16910 * 27 26 25 39 39 H 1.08999 * 109.47770 * 181.14010 * 27 26 25 40 40 H 1.08998 * 109.52266 * 182.49032 * 28 27 26 41 41 H 1.09001 * 109.52511 * 62.30116 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0088 0.9697 -0.3426 5 7 3.1345 -0.2515 1.3579 6 6 3.2627 0.7694 2.2283 7 8 2.9777 1.9005 1.8850 8 7 3.7126 0.5375 3.4776 9 6 3.8576 1.6482 4.4218 10 1 4.1711 2.5433 3.8845 11 6 4.8941 1.2950 5.4572 12 1 5.3944 0.3387 5.4162 13 6 5.2030 2.1923 6.4575 14 7 4.5934 3.3565 6.5077 15 14 6.4873 1.7542 7.7413 16 1 7.8257 2.1956 7.2732 17 1 6.1610 2.4348 9.0202 18 1 6.4963 0.2842 7.9510 19 6 2.5170 1.9101 5.1109 20 9 2.1147 0.7612 5.8004 21 9 2.6557 2.9703 6.0131 22 9 1.5548 2.2380 4.1497 23 6 3.1566 -1.0955 -0.9374 24 6 4.6882 -1.0933 -0.9421 25 6 5.1891 -2.1380 -1.9430 26 8 4.6570 -1.8512 -3.2379 27 6 3.2299 -1.8872 -3.3033 28 6 2.6503 -0.8310 -2.3588 29 1 -1.0500 -0.0009 0.0008 30 1 3.3657 -1.1533 1.6306 31 1 3.9402 -0.3648 3.7513 32 1 4.8110 3.9879 7.2112 33 1 2.7943 -2.0652 -0.5959 34 1 5.0503 -0.1076 -1.2345 35 1 5.0559 -1.3365 0.0548 36 1 4.8620 -3.1286 -1.6268 37 1 6.2780 -2.1102 -1.9832 38 1 2.8772 -2.8745 -3.0049 39 1 2.9075 -1.6788 -4.3235 40 1 1.5619 -0.8866 -2.3740 41 1 2.9698 0.1602 -2.6806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932891690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:27 Heat of formation + Delta-G solvation = -185.251127 kcal Electronic energy + Delta-G solvation = -29998.634940 eV Core-core repulsion = 25271.884190 eV Total energy + Delta-G solvation = -4726.750750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.41121 -48.04683 -47.72355 -41.32448 -40.21960 -37.60284 -36.35055 -34.61956 -33.89891 -33.41529 -31.92709 -30.33183 -28.15766 -26.56852 -24.57565 -24.38165 -23.41846 -22.02837 -21.19246 -19.99578 -19.43229 -18.85528 -18.77530 -18.56554 -17.88321 -17.16749 -16.99151 -16.88944 -16.63700 -16.19386 -15.72995 -15.58207 -15.38639 -15.09872 -14.95111 -14.59627 -14.47863 -14.44795 -14.29159 -14.07968 -14.02146 -13.88269 -13.85140 -13.23838 -13.04330 -12.75938 -12.59982 -12.27256 -12.22850 -12.20157 -11.67499 -11.61226 -11.57714 -11.35261 -11.17871 -11.08951 -10.67554 -10.52356 -10.42513 -9.92211 -8.20303 -6.51276 1.32940 1.48492 1.49066 1.60678 1.85332 2.09793 2.14866 2.38557 2.56513 2.95413 3.02073 3.26794 3.34313 3.70214 3.78271 3.79334 3.88417 3.94737 4.09669 4.18941 4.32862 4.34670 4.46894 4.60353 4.72596 4.80338 4.84170 4.89166 4.90488 5.06461 5.16083 5.17120 5.32022 5.42430 5.44521 5.52608 5.65873 6.07967 6.31743 6.54086 6.65732 7.13407 7.20225 7.61610 8.72576 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.003298 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.044715 B = 8488.012923 C = 9659.650370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.228 4.228 3 C 0.281 3.719 4 H 0.082 0.918 5 N -0.721 5.721 6 C 0.698 3.302 7 O -0.626 6.626 8 N -0.717 5.717 9 C 0.271 3.729 10 H 0.046 0.954 11 C -0.560 4.560 12 H 0.094 0.906 13 C 0.014 3.986 14 N -0.875 5.875 15 Si 0.984 3.016 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.257 1.257 19 C 0.411 3.589 20 F -0.204 7.204 21 F -0.151 7.151 22 F -0.220 7.220 23 C -0.077 4.077 24 C -0.149 4.149 25 C 0.062 3.938 26 O -0.405 6.405 27 C 0.063 3.937 28 C -0.145 4.145 29 H 0.245 0.755 30 H 0.413 0.587 31 H 0.411 0.589 32 H 0.268 0.732 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -14.275 -14.300 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.230 4.230 3 C 0.176 3.824 4 H 0.100 0.900 5 N -0.377 5.377 6 C 0.398 3.602 7 O -0.506 6.506 8 N -0.371 5.371 9 C 0.163 3.837 10 H 0.064 0.936 11 C -0.596 4.596 12 H 0.112 0.888 13 C -0.191 4.191 14 N -0.509 5.509 15 Si 0.808 3.192 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.181 1.181 19 C 0.355 3.645 20 F -0.185 7.185 21 F -0.132 7.132 22 F -0.202 7.202 23 C -0.096 4.096 24 C -0.187 4.187 25 C -0.014 4.014 26 O -0.324 6.324 27 C -0.013 4.013 28 C -0.184 4.184 29 H 0.261 0.739 30 H 0.250 0.750 31 H 0.247 0.753 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.899 -13.018 -14.644 19.685 hybrid contribution -0.255 -0.121 1.520 1.546 sum -2.154 -13.139 -13.124 18.695 Atomic orbital electron populations 1.25717 0.96802 0.99875 0.97778 1.23868 0.95501 1.01344 1.02244 1.17667 0.83042 1.00439 0.81298 0.90032 1.44880 1.71068 1.09743 1.12047 1.16233 0.77840 0.84879 0.81216 1.90900 1.58142 1.23173 1.78364 1.44970 1.69845 1.11914 1.10412 1.19181 0.87869 0.88484 0.88143 0.93625 1.21224 1.22182 1.04814 1.11424 0.88757 1.26018 0.98362 0.94695 1.00039 1.70541 1.38759 1.07888 1.33760 0.85142 0.78064 0.79086 0.76929 1.19513 1.21183 1.18097 1.23408 0.88880 0.74191 0.78024 1.92979 1.92369 1.51832 1.81365 1.93374 1.94796 1.56858 1.68200 1.93067 1.69015 1.92989 1.65159 1.21354 0.96061 0.97827 0.94344 1.22241 0.94184 1.00917 1.01358 1.22679 0.99581 0.97083 0.82091 1.87920 1.21449 1.91868 1.31164 1.22674 0.80149 0.97932 1.00575 1.22175 1.01779 1.00719 0.93683 0.73881 0.74957 0.75265 0.92196 0.88390 0.92261 0.89521 0.91383 0.87923 0.91617 0.87617 0.89870 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 19.25 74.32 1.43 -3.08 16 2 C -0.23 -6.33 11.65 31.13 0.36 -5.97 16 3 C 0.28 7.35 2.02 43.19 0.09 7.44 16 4 H 0.08 2.60 7.57 -2.39 -0.02 2.58 16 5 N -0.72 -20.21 4.41 -466.57 -2.06 -22.27 16 6 C 0.70 27.86 8.04 179.05 1.44 29.30 16 7 O -0.63 -31.21 14.58 -3.99 -0.06 -31.27 16 8 N -0.72 -28.89 4.99 -461.41 -2.30 -31.19 16 9 C 0.27 13.68 2.21 44.24 0.10 13.78 16 10 H 0.05 2.68 7.58 -2.39 -0.02 2.66 16 11 C -0.56 -27.98 8.47 25.60 0.22 -27.76 16 12 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 13 C 0.01 0.72 5.20 84.66 0.44 1.16 16 14 N -0.88 -48.66 9.50 21.45 0.20 -48.46 16 15 Si 0.98 40.12 29.54 68.60 2.03 42.14 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 19 C 0.41 21.69 2.81 71.98 0.20 21.89 16 20 F -0.20 -10.07 16.94 44.97 0.76 -9.31 16 21 F -0.15 -8.64 12.91 44.97 0.58 -8.06 16 22 F -0.22 -11.79 15.68 44.97 0.70 -11.08 16 23 C -0.08 -1.35 1.88 -10.68 -0.02 -1.37 16 24 C -0.15 -2.53 5.22 30.68 0.16 -2.37 16 25 C 0.06 0.90 6.84 72.02 0.49 1.39 16 26 O -0.40 -7.40 10.77 -148.98 -1.60 -9.00 16 27 C 0.06 0.87 6.84 72.01 0.49 1.37 16 28 C -0.15 -2.37 5.11 30.68 0.16 -2.21 16 29 H 0.24 4.01 7.80 -4.42 -0.03 3.97 16 30 H 0.41 8.44 8.43 -92.71 -0.78 7.66 16 31 H 0.41 13.52 8.55 -92.70 -0.79 12.72 16 32 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 35 H 0.09 1.35 7.58 -2.38 -0.02 1.33 16 36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.28 7.36 -2.39 -0.02 1.27 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.89 354.08 3.32 -67.56 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.49 Total: 27.39 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 5.56 Total: 33.56 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -4.16 Total: -101.93 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.66 Total: -40.27 kcal Atomic # 9 Polarization: -30.50 SS G_CDS: 2.05 Total: -28.45 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -70.89 3.32 -67.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932891690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.690 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds