Wall clock time and date at job start Tue Mar 31 2020 18:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.49536 * 2 1 4 4 C 1.53195 * 109.49367 * 239.90790 * 2 1 3 5 5 N 1.46930 * 108.77335 * 185.41462 * 4 2 1 6 6 C 1.36936 * 120.62952 * 233.58506 * 5 4 2 7 7 H 1.07996 * 120.00173 * 36.55792 * 6 5 4 8 8 C 1.38810 * 119.99855 * 216.55591 * 6 5 4 9 9 N 1.31621 * 120.00105 * 12.26336 * 8 6 5 10 10 Si 1.86801 * 119.99931 * 192.26162 * 8 6 5 11 11 H 1.48503 * 109.47080 * 60.00316 * 10 8 6 12 12 H 1.48501 * 109.47062 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47424 * 300.00118 * 10 8 6 14 14 C 1.46929 * 118.73836 * 53.60636 * 5 4 2 15 15 C 1.53195 * 108.77590 * 306.39102 * 14 5 4 16 16 C 1.53034 * 109.49521 * 120.06956 * 2 1 3 17 17 H 1.09000 * 109.45034 * 301.32466 * 16 2 1 18 18 N 1.46504 * 109.46308 * 61.29620 * 16 2 1 19 19 C 1.34774 * 119.99791 * 205.06674 * 18 16 2 20 20 O 1.21765 * 120.00091 * 355.47872 * 19 18 16 21 21 C 1.46261 * 120.00022 * 175.47987 * 19 18 16 22 22 C 1.33478 * 122.20974 * 184.85142 * 21 19 18 23 23 S 1.75718 * 109.85613 * 180.02562 * 22 21 19 24 24 C 1.75942 * 91.05755 * 359.97438 * 23 22 21 25 25 C 1.36290 * 142.80557 * 179.97438 * 24 23 22 26 26 N 1.33745 * 107.81886 * 179.31980 * 25 24 23 27 27 C 1.30363 * 109.45646 * 0.58497 * 26 25 24 28 28 N 1.35927 * 109.81830 * 359.73595 * 24 23 22 29 29 H 1.09001 * 109.47066 * 299.93231 * 1 2 3 30 30 H 1.09004 * 109.47151 * 59.93032 * 1 2 3 31 31 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.58732 * 305.19595 * 4 2 1 33 33 H 1.08993 * 109.59020 * 65.63024 * 4 2 1 34 34 H 0.97000 * 120.00335 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58853 * 186.60543 * 14 5 4 36 36 H 1.08994 * 109.58856 * 66.17891 * 14 5 4 37 37 H 1.08995 * 109.49799 * 294.68967 * 15 14 5 38 38 H 1.08997 * 109.49974 * 174.58730 * 15 14 5 39 39 H 0.96990 * 119.99727 * 25.06560 * 18 16 2 40 40 H 1.07992 * 125.07117 * 359.97438 * 22 21 19 41 41 H 1.07998 * 126.08695 * 0.02562 * 25 24 23 42 42 H 1.07999 * 125.56808 * 179.48271 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5046 -0.8294 -1.1695 6 6 4.2935 -0.3799 -2.1945 7 1 4.0146 0.5090 -2.7408 8 6 5.4519 -1.0666 -2.5313 9 7 5.6709 -2.2682 -2.0407 10 14 6.6998 -0.2855 -3.6811 11 1 7.1945 0.9824 -3.0871 12 1 7.8399 -1.2161 -3.8801 13 1 6.0577 -0.0017 -4.9896 14 6 4.1053 -1.4268 0.0310 15 6 3.5709 -0.6948 1.2661 16 6 2.0408 -0.7228 1.2485 17 1 1.6582 -0.2238 2.1388 18 7 1.5783 -2.1128 1.2312 19 6 1.4489 -2.7943 2.3868 20 8 1.7940 -2.2834 3.4368 21 6 0.8939 -4.1475 2.3795 22 6 0.6580 -4.8257 3.5047 23 16 -0.0039 -6.4075 3.1205 24 6 0.0745 -6.0579 1.3979 25 6 -0.1879 -6.5872 0.1697 26 7 0.1361 -5.6705 -0.7487 27 6 0.5973 -4.6053 -0.1552 28 7 0.5724 -4.8082 1.2035 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6052 -1.7220 -1.2977 33 1 1.7638 -0.1584 -2.1389 34 1 6.4801 -2.7482 -2.2763 35 1 5.1896 -1.3247 -0.0135 36 1 3.8375 -2.4818 0.0873 37 1 3.9159 0.3391 1.2539 38 1 3.9335 -1.1892 2.1673 39 1 1.3653 -2.5426 0.3882 40 1 0.8465 -4.4576 4.5023 41 1 -0.5964 -7.5675 -0.0265 42 1 0.9428 -3.7100 -0.6505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943289320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:06 Heat of formation + Delta-G solvation = 86.843612 kcal Electronic energy + Delta-G solvation = -27516.470589 eV Core-core repulsion = 23818.421115 eV Total energy + Delta-G solvation = -3698.049474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.91130 -40.14024 -38.06057 -36.23230 -34.43687 -32.74762 -31.32649 -30.59154 -30.35780 -29.43659 -26.20034 -25.62477 -24.65553 -22.71637 -22.07431 -21.71813 -21.23305 -20.54109 -19.14260 -18.57228 -17.04792 -16.65799 -16.37061 -15.74828 -15.37427 -15.13498 -14.81951 -14.76566 -14.41338 -14.06275 -13.85316 -13.69121 -13.60689 -13.33937 -13.04415 -12.67943 -12.28837 -12.05332 -11.74239 -11.58038 -11.45495 -11.17016 -10.94405 -10.77156 -10.50847 -10.48107 -10.43293 -10.34819 -10.23845 -10.15094 -9.87942 -9.60233 -9.53287 -8.88277 -8.54121 -7.66313 -6.64559 -5.86658 -3.40119 0.39077 0.84412 1.26628 1.59574 2.25543 2.78113 3.06749 3.14901 3.34235 3.40348 3.40715 4.17603 4.38057 4.42185 4.68808 4.88784 5.02211 5.12147 5.21292 5.25910 5.30372 5.38324 5.48518 5.65616 5.72695 5.84606 5.96046 6.01636 6.12623 6.15211 6.18017 6.32010 6.46626 6.54586 6.60918 6.71707 6.77356 6.81150 7.21216 7.43684 7.50642 7.64017 7.74655 8.02370 8.41880 9.13474 9.73190 10.34126 11.21239 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.003904 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.021743 B = 7170.571401 C = 7841.107073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 H 0.087 0.913 4 C 0.152 3.848 5 N -0.587 5.587 6 C -0.265 4.265 7 H 0.062 0.938 8 C 0.015 3.985 9 N -0.897 5.897 10 Si 0.903 3.097 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.178 3.822 15 C -0.156 4.156 16 C 0.159 3.841 17 H 0.078 0.922 18 N -0.701 5.701 19 C 0.578 3.422 20 O -0.525 6.525 21 C 0.031 3.969 22 C -0.140 4.140 23 S 0.170 5.830 24 C -0.101 4.101 25 C 0.024 3.976 26 N -0.441 5.441 27 C 0.199 3.801 28 N -0.399 5.399 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.006 0.994 33 H 0.062 0.938 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.017 0.983 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.397 0.603 40 H 0.203 0.797 41 H 0.184 0.816 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 -5.128 10.299 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 H 0.106 0.894 4 C 0.025 3.975 5 N -0.310 5.310 6 C -0.395 4.395 7 H 0.080 0.920 8 C -0.185 4.185 9 N -0.539 5.539 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.052 3.948 15 C -0.196 4.196 16 C 0.056 3.944 17 H 0.096 0.904 18 N -0.354 5.354 19 C 0.360 3.640 20 O -0.402 6.402 21 C -0.082 4.082 22 C -0.281 4.281 23 S 0.429 5.571 24 C -0.325 4.325 25 C -0.134 4.134 26 N -0.155 5.155 27 C -0.083 4.083 28 N -0.080 5.080 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.236 0.764 40 H 0.220 0.780 41 H 0.201 0.799 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.121 -5.977 10.950 18.105 hybrid contribution 1.260 1.305 -0.977 2.060 sum -11.862 -4.673 9.973 16.186 Atomic orbital electron populations 1.21789 0.95643 1.01232 1.01471 1.22005 0.94655 1.01032 0.96509 0.89438 1.20951 0.86418 0.95641 0.94493 1.43940 0.98910 1.71729 1.16372 1.19025 1.04270 1.05539 1.10668 0.92030 1.25279 1.00433 0.94737 0.98101 1.69980 1.26638 1.10739 1.46574 0.86384 0.80938 0.78506 0.80935 1.20855 1.21595 1.20678 1.20633 0.98547 0.93031 0.82583 1.22595 0.93783 1.02318 1.00887 1.21054 0.95511 0.79352 0.98482 0.90393 1.46307 1.65972 1.14991 1.08141 1.16912 0.78937 0.83058 0.85050 1.90873 1.50042 1.68355 1.30920 1.19273 1.08494 0.96341 0.84122 1.25751 1.02589 0.97469 1.02256 1.84447 1.68663 1.12853 0.91137 1.24521 1.14894 0.91715 1.01353 1.21845 1.06895 1.00489 0.84215 1.70208 1.14163 0.99990 1.31120 1.25396 1.05879 1.01183 0.75886 1.44237 1.44629 1.12341 1.06776 0.93103 0.92323 0.93414 0.97673 0.91965 0.93422 0.90517 0.96476 0.91302 0.92462 0.76354 0.78030 0.79921 0.77052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 37.16 0.34 -1.47 16 2 C -0.12 -1.88 2.67 -90.50 -0.24 -2.12 16 3 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 4 C 0.15 2.86 5.50 -3.71 -0.02 2.84 16 5 N -0.59 -13.70 2.95 -172.31 -0.51 -14.20 16 6 C -0.27 -6.96 9.50 -15.06 -0.14 -7.10 16 7 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 8 C 0.01 0.40 4.98 -17.43 -0.09 0.32 16 9 N -0.90 -25.45 11.56 55.49 0.64 -24.81 16 10 Si 0.90 21.18 29.57 -169.99 -5.03 16.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.18 4.05 4.98 -3.71 -0.02 4.03 16 15 C -0.16 -2.92 5.77 -26.61 -0.15 -3.08 16 16 C 0.16 2.59 2.18 -67.89 -0.15 2.44 16 17 H 0.08 1.24 7.64 -51.93 -0.40 0.84 16 18 N -0.70 -10.93 3.59 -55.19 -0.20 -11.13 16 19 C 0.58 9.05 7.71 -13.04 -0.10 8.95 16 20 O -0.52 -9.18 16.29 5.13 0.08 -9.10 16 21 C 0.03 0.43 6.70 -83.21 -0.56 -0.13 16 22 C -0.14 -1.54 10.62 29.07 0.31 -1.23 16 23 S 0.17 1.61 23.33 -107.50 -2.51 -0.90 16 24 C -0.10 -1.27 7.81 -16.44 -0.13 -1.40 16 25 C 0.02 0.30 11.93 -17.42 -0.21 0.10 16 26 N -0.44 -6.73 11.22 -13.83 -0.16 -6.88 16 27 C 0.20 2.96 11.91 -88.30 -1.05 1.91 16 28 N -0.40 -5.60 3.20 -60.39 -0.19 -5.80 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 32 H 0.01 0.10 6.06 -51.93 -0.31 -0.21 16 33 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.08 2.00 6.58 -51.93 -0.34 1.66 16 36 H 0.02 0.42 7.74 -51.93 -0.40 0.01 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 39 H 0.40 6.10 3.14 -40.82 -0.13 5.98 16 40 H 0.20 1.80 7.93 -52.49 -0.42 1.38 16 41 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.21 3.04 5.40 -52.49 -0.28 2.76 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -30.59 349.24 -9.98 -40.58 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.17 Total: 6.76 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.21 Total: 4.06 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.41 Total: -62.82 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.51 Total: -0.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.59 -9.98 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943289320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.421 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds